Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:04:12 (678472): wrapper (7.7.26015): starting
05:04:12 (678472): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 05:04:12] Arguments: --nthreads 4
[2026-03-15 05:04:12] Threads: 4
[2026-03-15 05:04:12] Checking for CVMFS
[2026-03-15 05:04:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 05:04:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 05:04:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 05:04:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 05:04:13] 2.9.2.0 49711 25338 106384 157300 1 50 27249635 36864000 0 130560 0 13376018 99.986 951294 13177 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 05:04:13] CVMFS is ok
[2026-03-15 05:04:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 05:04:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 05:04:13] Further information can be found at the LHC@home message board.
[2026-03-15 05:04:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 05:04:13] Checking for apptainer binary...
[2026-03-15 05:04:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 05:04:13] Running /usr/bin/apptainer --version
[2026-03-15 05:04:13] apptainer version 1.4.1-1.1
[2026-03-15 05:04:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 05:04:13] thA317a
[2026-03-15 05:04:13] apptainer works
[2026-03-15 05:04:13] Set ATHENA_PROC_NUMBER=4
[2026-03-15 05:04:13] Set ATHENA_CORE_NUMBER=4
[2026-03-15 05:04:13] Starting ATLAS job with PandaID=7046913996
[2026-03-15 05:04:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 06:05:34]  *** The last 200 lines of the pilot log: ***
[2026-03-15 06:05:34] 2026-03-15 05:05:16,476 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 06:05:34] 2026-03-15 05:05:16,476 | INFO     | collected zombie processes
[2026-03-15 06:05:34] 2026-03-15 05:05:16,476 | INFO     | will attempt to kill all subprocesses of pid=687091
[2026-03-15 06:05:34] 2026-03-15 05:05:16,534 | INFO     | process IDs to be killed: [687091] (in reverse order)
[2026-03-15 06:05:34] 2026-03-15 05:05:16,566 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 06:05:34] 2026-03-15 05:05:16,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 06:05:34] 2026-03-15 05:05:16,569 | INFO     | did not find any defunct processes belonging to 687091
[2026-03-15 06:05:34] 2026-03-15 05:05:16,570 | INFO     | did not find any defunct processes belonging to 687091
[2026-03-15 06:05:34] 2026-03-15 05:05:16,570 | INFO     | ready for new job
[2026-03-15 06:05:34] 2026-03-15 05:05:16,570 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 06:05:34] 2026-03-15 05:05:16,571 | INFO     | **************************************
[2026-03-15 06:05:34] 2026-03-15 05:05:16,571 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 06:05:34] 2026-03-15 05:05:16,571 | INFO     | **************************************
[2026-03-15 06:05:34] 2026-03-15 05:05:16,571 | INFO     | 
[2026-03-15 06:05:34] 2026-03-15 05:05:16,571 | INFO     | architecture information:
[2026-03-15 06:05:34] 2026-03-15 05:05:16,572 | INFO     | executing command: cat /etc/os-release
[2026-03-15 06:05:34] 2026-03-15 05:05:16,582 | INFO     | cat /etc/os-release:
[2026-03-15 06:05:34] NAME="CentOS Linux"
[2026-03-15 06:05:34] VERSION="7 (Core)"
[2026-03-15 06:05:34] ID="centos"
[2026-03-15 06:05:34] ID_LIKE="rhel fedora"
[2026-03-15 06:05:34] VERSION_ID="7"
[2026-03-15 06:05:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 06:05:34] ANSI_COLOR="0;31"
[2026-03-15 06:05:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 06:05:34] HOME_URL="https://www.centos.org/"
[2026-03-15 06:05:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 06:05:34] 
[2026-03-15 06:05:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 06:05:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 06:05:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 06:05:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 06:05:34] 
[2026-03-15 06:05:34] 2026-03-15 05:05:16,583 | INFO     | **************************************
[2026-03-15 06:05:34] 2026-03-15 05:05:17,086 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | INFO     | sufficient remaining disk space (230104760320 B)
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | INFO     | update_server=False
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 06:05:34] 2026-03-15 05:05:17,099 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 06:05:34] 2026-03-15 05:05:17,282 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 06:05:34] 2026-03-15 05:05:17,300 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 06:05:34] 2026-03-15 05:05:17,300 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 06:05:34] 2026-03-15 05:05:17,300 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 06:05:34] 2026-03-15 05:05:17,300 | INFO     | will abort loop
[2026-03-15 06:05:34] 2026-03-15 05:05:17,520 | INFO     | all data control threads have been joined
[2026-03-15 06:05:34] 2026-03-15 05:05:18,105 | INFO     | [job] retrieve thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,146 | INFO     | [payload] failed_post thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,181 | INFO     | [data] copytool_in thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,306 | INFO     | [job] job monitor thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,521 | INFO     | [data] control thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,556 | INFO     | all job control threads have been joined
[2026-03-15 06:05:34] 2026-03-15 05:05:18,568 | INFO     | all payload control threads have been joined
[2026-03-15 06:05:34] 2026-03-15 05:05:18,635 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,913 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:18,962 | INFO     | [payload] validate_post thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,287 | INFO     | [data] copytool_out thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,462 | INFO     | [job] validate thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,545 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,561 | INFO     | [job] control thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,573 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,574 | INFO     | [payload] control thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:19,960 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 06:05:34] 2026-03-15 05:05:20,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 06:05:34] 2026-03-15 05:05:20,966 | INFO     | [job] queue monitor thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:24,316 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 06:05:34] 2026-03-15 05:05:27,855 | INFO     | [monitor] cgroup control has ended
[2026-03-15 06:05:34] 2026-03-15 05:05:28,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140265962927936)>', '<ExcThread(monitor, started 140265025165056)>']
[2026-03-15 06:05:34] 2026-03-15 05:05:29,164 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 06:05:34] 2026-03-15 05:05:29,164 | INFO     | [monitor] control thread has ended
[2026-03-15 06:05:34] 2026-03-15 05:05:34,007 | INFO     | all workflow threads have been joined
[2026-03-15 06:05:34] 2026-03-15 05:05:34,007 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 06:05:34] 2026-03-15 05:05:34,007 | INFO     | traces error code: 0
[2026-03-15 06:05:34] 2026-03-15 05:05:34,007 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 06:05:34] 2026-03-15 05:05:34,056 [wrapper] ==== pilot stdout END ====
[2026-03-15 06:05:34] 2026-03-15 05:05:34,059 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 06:05:34] 2026-03-15 05:05:34,062 [wrapper] pilotpid: 682586
[2026-03-15 06:05:34] 2026-03-15 05:05:34,064 [wrapper] Pilot exit status: 0
[2026-03-15 06:05:34] 2026-03-15 05:05:34,072 [wrapper] pandaids: 7046913996
[2026-03-15 06:05:34] 2026-03-15 05:05:34,093 [wrapper] cleanup supervisor_pilot  692320 682587
[2026-03-15 06:05:34] 2026-03-15 05:05:34,095 [wrapper] Test setup, not cleaning
[2026-03-15 06:05:34] 2026-03-15 05:05:34,098 [wrapper] apfmon messages muted
[2026-03-15 06:05:34] 2026-03-15 05:05:34,101 [wrapper] ==== wrapper stdout END ====
[2026-03-15 06:05:34] 2026-03-15 05:05:34,103 [wrapper] ==== wrapper stderr END ====
[2026-03-15 06:05:34]  *** Error codes and diagnostics ***
[2026-03-15 06:05:34]     "exeErrorCode": 0,
[2026-03-15 06:05:34]     "exeErrorDiag": "",
[2026-03-15 06:05:34]     "pilotErrorCode": 0,
[2026-03-15 06:05:34]     "pilotErrorDiag": "",
[2026-03-15 06:05:34]  *** Listing of results directory ***
[2026-03-15 06:05:34] total 617256
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc    585013 Mar 14 14:10 pilot3.tar.gz
[2026-03-15 06:05:34] -rwx------ 1 boinc boinc     36322 Mar 14 14:10 runpilot2-wrapper.sh
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc      5111 Mar 14 14:12 queuedata.json
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc       100 Mar 15 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 06:05:34] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 05:04 run_atlas
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc       105 Mar 15 05:04 job.xml
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc 437936168 Mar 15 05:04 EVNT.46701403._001897.pool.root.1
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc    597532 Mar 15 05:04 input.tar.gz
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:04 start_atlas.sh
[2026-03-15 06:05:34] drwxrwx--x 2 boinc boinc      4096 Mar 15 05:04 shared
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:04 boinc_setup_complete
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc      6439 Mar 15 05:04 init_data.xml
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc         0 Mar 15 05:04 boinc_lockfile
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc      2565 Mar 15 05:04 pandaJob.out
[2026-03-15 06:05:34] -rw------- 1 boinc boinc   1006481 Mar 15 05:04 agis_schedconf.cvmfs.json
[2026-03-15 06:05:34] -rw------- 1 boinc boinc   1511579 Mar 15 05:04 agis_ddmendpoints.agis.ALL.json
[2026-03-15 06:05:34] -rw------- 1 boinc boinc       424 Mar 15 05:04 workernode_map.json
[2026-03-15 06:05:34] drwx------ 5 boinc boinc      4096 Mar 15 05:04 pilot3
[2026-03-15 06:05:34] -rw------- 1 boinc boinc        95 Mar 15 06:04 pilot_heartbeat.json
[2026-03-15 06:05:34] -rw------- 1 boinc boinc 188542265 Mar 15 06:04 HITS.48955010._043864.pool.root.1
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc       531 Mar 15 06:05 boinc_task_state.xml
[2026-03-15 06:05:34] -rw------- 1 boinc boinc      1015 Mar 15 06:05 memory_monitor_summary.json
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc      8192 Mar 15 06:05 boinc_mmap_file
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc        27 Mar 15 06:05 wrapper_checkpoint.txt
[2026-03-15 06:05:34] -rw------- 1 boinc boinc    279006 Mar 15 06:05 log.48955010._043864.job.log.tgz.1
[2026-03-15 06:05:34] -rw------- 1 boinc boinc      6303 Mar 15 06:05 heartbeat.json
[2026-03-15 06:05:34] -rw------- 1 boinc boinc      4738 Mar 15 06:05 pilotlog.txt
[2026-03-15 06:05:34] -rw------- 1 boinc boinc    548937 Mar 15 06:05 log.48955010._043864.job.log.1
[2026-03-15 06:05:34] -rw------- 1 boinc boinc       357 Mar 15 06:05 output.list
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc       620 Mar 15 06:05 runtime_log
[2026-03-15 06:05:34] -rw------- 1 boinc boinc    849920 Mar 15 06:05 result.tar.gz
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc      8901 Mar 15 06:05 runtime_log.err
[2026-03-15 06:05:34] -rw------- 1 boinc boinc       658 Mar 15 06:05 JILMDmcwdL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmvKqLDmMVDx7m.diag
[2026-03-15 06:05:34] -rw-r--r-- 1 boinc boinc     10558 Mar 15 06:05 stderr.txt
[2026-03-15 06:05:34] HITS file was successfully produced:
[2026-03-15 06:05:34] -rw------- 1 boinc boinc 188542265 Mar 15 06:04 shared/HITS.pool.root.1
[2026-03-15 06:05:34]  *** Contents of shared directory: ***
[2026-03-15 06:05:34] total 613240
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc 437936168 Mar 15 05:04 ATLAS.root_0
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc    597532 Mar 15 05:04 input.tar.gz
[2026-03-15 06:05:34] -rw-r--r-- 2 boinc boinc     15845 Mar 15 05:04 start_atlas.sh
[2026-03-15 06:05:34] -rw------- 1 boinc boinc 188542265 Mar 15 06:04 HITS.pool.root.1
[2026-03-15 06:05:34] -rw------- 1 boinc boinc    849920 Mar 15 06:05 result.tar.gz
06:05:35 (678472): run_atlas exited; CPU time 13205.482430
06:05:35 (678472): called boinc_finish(0)

</stderr_txt>
]]>

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