Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:18:23 (368462): wrapper (7.7.26015): starting
03:18:23 (368462): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 03:18:23] Arguments: --nthreads 4
[2026-03-15 03:18:23] Threads: 4
[2026-03-15 03:18:23] Checking for CVMFS
[2026-03-15 03:18:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 03:18:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 03:18:24] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 03:18:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 03:18:24] 2.9.2.0 79673 25085 105964 157298 0 49 30893947 36864000 0 130560 0 11783017 99.985 949564 10618 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 03:18:24] CVMFS is ok
[2026-03-15 03:18:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 03:18:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 03:18:24] Further information can be found at the LHC@home message board.
[2026-03-15 03:18:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 03:18:24] Checking for apptainer binary...
[2026-03-15 03:18:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 03:18:24] Running /usr/bin/apptainer --version
[2026-03-15 03:18:24] apptainer version 1.4.1-1.1
[2026-03-15 03:18:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 03:18:24] thA309
[2026-03-15 03:18:24] apptainer works
[2026-03-15 03:18:24] Set ATHENA_PROC_NUMBER=4
[2026-03-15 03:18:24] Set ATHENA_CORE_NUMBER=4
[2026-03-15 03:18:24] Starting ATLAS job with PandaID=7046911309
[2026-03-15 03:18:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 04:27:56]  *** The last 200 lines of the pilot log: ***
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | job 7046911309 has completed (purged errors)
[2026-03-15 04:27:56] 2026-03-15 03:27:25,278 | INFO     | overall cleanup function is called
[2026-03-15 04:27:56] 2026-03-15 03:27:25,402 | WARNING  | process 377099 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 04:27:56] 2026-03-15 03:27:25,440 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 04:27:56] 2026-03-15 03:27:25,487 | INFO     | number of running child processes to parent process 377099: 1
[2026-03-15 04:27:56] 2026-03-15 03:27:25,487 | INFO     | maximum number of monitored processes: 6
[2026-03-15 04:27:56] 2026-03-15 03:27:25,487 | INFO     | aborting job monitoring since job object (job id=7046911309) has expired
[2026-03-15 04:27:56] 2026-03-15 03:27:26,285 | INFO     | --- collectZombieJob: --- 10, [377099]
[2026-03-15 04:27:56] 2026-03-15 03:27:26,285 | INFO     | zombie collector waiting for pid 377099
[2026-03-15 04:27:56] 2026-03-15 03:27:26,285 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 04:27:56] 2026-03-15 03:27:26,285 | INFO     | collected zombie processes
[2026-03-15 04:27:56] 2026-03-15 03:27:26,285 | INFO     | will attempt to kill all subprocesses of pid=377099
[2026-03-15 04:27:56] 2026-03-15 03:27:26,335 | INFO     | process IDs to be killed: [377099] (in reverse order)
[2026-03-15 04:27:56] 2026-03-15 03:27:26,372 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 04:27:56] 2026-03-15 03:27:26,372 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 04:27:56] 2026-03-15 03:27:26,374 | INFO     | did not find any defunct processes belonging to 377099
[2026-03-15 04:27:56] 2026-03-15 03:27:26,375 | INFO     | did not find any defunct processes belonging to 377099
[2026-03-15 04:27:56] 2026-03-15 03:27:26,375 | INFO     | ready for new job
[2026-03-15 04:27:56] 2026-03-15 03:27:26,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 04:27:56] 2026-03-15 03:27:26,376 | INFO     | **************************************
[2026-03-15 04:27:56] 2026-03-15 03:27:26,376 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 04:27:56] 2026-03-15 03:27:26,376 | INFO     | **************************************
[2026-03-15 04:27:56] 2026-03-15 03:27:26,376 | INFO     | 
[2026-03-15 04:27:56] 2026-03-15 03:27:26,377 | INFO     | architecture information:
[2026-03-15 04:27:56] 2026-03-15 03:27:26,377 | INFO     | executing command: cat /etc/os-release
[2026-03-15 04:27:56] 2026-03-15 03:27:26,392 | INFO     | cat /etc/os-release:
[2026-03-15 04:27:56] NAME="CentOS Linux"
[2026-03-15 04:27:56] VERSION="7 (Core)"
[2026-03-15 04:27:56] ID="centos"
[2026-03-15 04:27:56] ID_LIKE="rhel fedora"
[2026-03-15 04:27:56] VERSION_ID="7"
[2026-03-15 04:27:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 04:27:56] ANSI_COLOR="0;31"
[2026-03-15 04:27:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 04:27:56] HOME_URL="https://www.centos.org/"
[2026-03-15 04:27:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 04:27:56] 
[2026-03-15 04:27:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 04:27:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 04:27:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 04:27:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 04:27:56] 
[2026-03-15 04:27:56] 2026-03-15 03:27:26,392 | INFO     | **************************************
[2026-03-15 04:27:56] 2026-03-15 03:27:26,896 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 04:27:56] 2026-03-15 03:27:26,914 | INFO     | sufficient remaining disk space (226813280256 B)
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | INFO     | update_server=False
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 04:27:56] 2026-03-15 03:27:26,915 | INFO     | aborting loop
[2026-03-15 04:27:56] 2026-03-15 03:27:27,310 | INFO     | all job control threads have been joined
[2026-03-15 04:27:56] 2026-03-15 03:27:27,435 | INFO     | all data control threads have been joined
[2026-03-15 04:27:56] 2026-03-15 03:27:27,920 | INFO     | [job] retrieve thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:27,921 | INFO     | [job] queue monitor thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:27,921 | INFO     | [job] job monitor thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:27,951 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:28,067 | INFO     | [data] copytool_in thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:28,206 | INFO     | [payload] validate_post thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:28,312 | INFO     | [job] control thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:28,416 | INFO     | all payload control threads have been joined
[2026-03-15 04:27:56] 2026-03-15 03:27:28,441 | INFO     | [data] control thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:28,921 | INFO     | [data] copytool_out thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,113 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,199 | INFO     | [job] validate thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,228 | INFO     | [payload] failed_post thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,402 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,410 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:29,422 | INFO     | [payload] control thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:30,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 04:27:56] 2026-03-15 03:27:34,161 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 04:27:56] 2026-03-15 03:27:42,011 | INFO     | [monitor] cgroup control has ended
[2026-03-15 04:27:56] 2026-03-15 03:27:43,801 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140714119137088)>', '<ExcThread(monitor, started 140713178158848)>']
[2026-03-15 04:27:56] 2026-03-15 03:27:48,821 | INFO     | all workflow threads have been joined
[2026-03-15 04:27:56] 2026-03-15 03:27:48,822 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 04:27:56] 2026-03-15 03:27:48,822 | INFO     | traces error code: 0
[2026-03-15 04:27:56] 2026-03-15 03:27:48,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | INFO     | PID=372580 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 04:27:56] 2026-03-15 03:27:56,662 | INFO     | [monitor] control thread has ended
[2026-03-15 04:27:56] 2026-03-15 03:27:56,740 [wrapper] ==== pilot stdout END ====
[2026-03-15 04:27:56] 2026-03-15 03:27:56,744 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 04:27:56] 2026-03-15 03:27:56,749 [wrapper] pilotpid: 372580
[2026-03-15 04:27:56] 2026-03-15 03:27:56,753 [wrapper] Pilot exit status: 0
[2026-03-15 04:27:56] 2026-03-15 03:27:56,765 [wrapper] pandaids: 7046911309
[2026-03-15 04:27:56] 2026-03-15 03:27:56,789 [wrapper] cleanup supervisor_pilot  382811 372581
[2026-03-15 04:27:56] 2026-03-15 03:27:56,793 [wrapper] Test setup, not cleaning
[2026-03-15 04:27:56] 2026-03-15 03:27:56,797 [wrapper] apfmon messages muted
[2026-03-15 04:27:56] 2026-03-15 03:27:56,801 [wrapper] ==== wrapper stdout END ====
[2026-03-15 04:27:56] 2026-03-15 03:27:56,805 [wrapper] ==== wrapper stderr END ====
[2026-03-15 04:27:56]  *** Error codes and diagnostics ***
[2026-03-15 04:27:56]     "exeErrorCode": 0,
[2026-03-15 04:27:56]     "exeErrorDiag": "",
[2026-03-15 04:27:56]     "pilotErrorCode": 0,
[2026-03-15 04:27:56]     "pilotErrorDiag": "",
[2026-03-15 04:27:56]  *** Listing of results directory ***
[2026-03-15 04:27:56] total 616832
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc    585013 Mar 14 14:10 pilot3.tar.gz
[2026-03-15 04:27:56] -rwx------ 1 boinc boinc     36322 Mar 14 14:10 runpilot2-wrapper.sh
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc      5111 Mar 14 14:10 queuedata.json
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc       100 Mar 15 03:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 04:27:56] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 03:18 run_atlas
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc       105 Mar 15 03:18 job.xml
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc 441022677 Mar 15 03:18 EVNT.46701403._001887.pool.root.1
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc    597528 Mar 15 03:18 input.tar.gz
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc     15845 Mar 15 03:18 start_atlas.sh
[2026-03-15 04:27:56] drwxrwx--x 2 boinc boinc      4096 Mar 15 03:18 shared
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc         0 Mar 15 03:18 boinc_setup_complete
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc      6376 Mar 15 03:18 init_data.xml
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc         0 Mar 15 03:18 boinc_lockfile
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc      2565 Mar 15 03:18 pandaJob.out
[2026-03-15 04:27:56] -rw------- 1 boinc boinc   1006481 Mar 15 03:18 agis_schedconf.cvmfs.json
[2026-03-15 04:27:56] -rw------- 1 boinc boinc   1511579 Mar 15 03:18 agis_ddmendpoints.agis.ALL.json
[2026-03-15 04:27:56] -rw------- 1 boinc boinc       426 Mar 15 03:18 workernode_map.json
[2026-03-15 04:27:56] drwx------ 5 boinc boinc      4096 Mar 15 03:18 pilot3
[2026-03-15 04:27:56] -rw------- 1 boinc boinc 184877190 Mar 15 04:27 HITS.48955010._043372.pool.root.1
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc       530 Mar 15 04:27 boinc_task_state.xml
[2026-03-15 04:27:56] -rw------- 1 boinc boinc      1017 Mar 15 04:27 memory_monitor_summary.json
[2026-03-15 04:27:56] -rw------- 1 boinc boinc    295429 Mar 15 04:27 log.48955010._043372.job.log.tgz.1
[2026-03-15 04:27:56] -rw------- 1 boinc boinc      6316 Mar 15 04:27 heartbeat.json
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc      8192 Mar 15 04:27 boinc_mmap_file
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc        27 Mar 15 04:27 wrapper_checkpoint.txt
[2026-03-15 04:27:56] -rw------- 1 boinc boinc       816 Mar 15 04:27 pilotlog.txt
[2026-03-15 04:27:56] -rw------- 1 boinc boinc        95 Mar 15 04:27 pilot_heartbeat.json
[2026-03-15 04:27:56] -rw------- 1 boinc boinc    613373 Mar 15 04:27 log.48955010._043372.job.log.1
[2026-03-15 04:27:56] -rw------- 1 boinc boinc       357 Mar 15 04:27 output.list
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc       620 Mar 15 04:27 runtime_log
[2026-03-15 04:27:56] -rw------- 1 boinc boinc    921600 Mar 15 04:27 result.tar.gz
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc      8896 Mar 15 04:27 runtime_log.err
[2026-03-15 04:27:56] -rw------- 1 boinc boinc       657 Mar 15 04:27 ZqJLDmJwdL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmGIqLDmpCcTqn.diag
[2026-03-15 04:27:56] -rw-r--r-- 1 boinc boinc     12231 Mar 15 04:27 stderr.txt
[2026-03-15 04:27:56] HITS file was successfully produced:
[2026-03-15 04:27:56] -rw------- 1 boinc boinc 184877190 Mar 15 04:27 shared/HITS.pool.root.1
[2026-03-15 04:27:56]  *** Contents of shared directory: ***
[2026-03-15 04:27:56] total 612744
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc 441022677 Mar 15 03:18 ATLAS.root_0
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc    597528 Mar 15 03:18 input.tar.gz
[2026-03-15 04:27:56] -rw-r--r-- 2 boinc boinc     15845 Mar 15 03:18 start_atlas.sh
[2026-03-15 04:27:56] -rw------- 1 boinc boinc 184877190 Mar 15 04:27 HITS.pool.root.1
[2026-03-15 04:27:56] -rw------- 1 boinc boinc    921600 Mar 15 04:27 result.tar.gz
04:27:58 (368462): run_atlas exited; CPU time 15207.575768
04:27:58 (368462): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN