Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:12:15 (3874307): wrapper (7.7.26015): starting
06:12:15 (3874307): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 06:12:15] Arguments: --nthreads 12
[2026-03-14 06:12:15] Threads: 12
[2026-03-14 06:12:15] Checking for CVMFS
[2026-03-14 06:12:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 06:12:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 06:12:17] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 06:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 06:12:18] 2.11.5.0 394429 183631 248944 157278 1 366 40106435 45568000 22403 130560 0 1129389816 99.793 681326506 19801 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2026-03-14 06:12:18] CVMFS is ok
[2026-03-14 06:12:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 06:12:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 06:12:19] Further information can be found at the LHC@home message board.
[2026-03-14 06:12:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 06:12:19] Checking for apptainer binary...
[2026-03-14 06:12:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 06:12:19] Running /usr/bin/apptainer --version
[2026-03-14 06:12:19] apptainer version 1.4.1-1.el9
[2026-03-14 06:12:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 06:12:21] wns0074.triumf.lcg
[2026-03-14 06:12:21] apptainer works
[2026-03-14 06:12:21] Set ATHENA_PROC_NUMBER=12
[2026-03-14 06:12:21] Set ATHENA_CORE_NUMBER=12
[2026-03-14 06:12:21] Starting ATLAS job with PandaID=7042039848
[2026-03-14 06:12:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 06:18:11]  *** The last 200 lines of the pilot log: ***
[2026-03-14 06:18:11] 2026-03-14 13:17:34,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | wrong length of table data, x=[1773494098.0], y=[1507.0] (must be same and length>=4)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | INFO     | could have reported an average CPU frequency of 1383 MHz (4 samples)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . Timing measurements:
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . get job = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . initial setup = 31 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload setup = 37 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-in = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload execution = 69 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-out = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . log creation = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7042039848/pilotlog.txt
[2026-03-14 06:18:11] 2026-03-14 13:17:34,622 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-03-14 06:18:11] - Log from pilotlog.txt -
[2026-03-14 06:18:11] 2026-03-14 13:17:34,581 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7042039848/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,581 | INFO     | extracted standard info from prmon json
[2026-03-14 06:18:11] 2026-03-14 13:17:34,582 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 06:18:11] 2026-03-14 13:17:34,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | wrong length of table data, x=[1773494098.0], y=[1507.0] (must be same and length>=4)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | INFO     | could have reported an average CPU frequency of 1383 MHz (4 samples)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . Timing measurements:
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . get job = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . initial setup = 31 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload setup = 37 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-in = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload execution = 69 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-out = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . log creation = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7042039848/pilotlog.txt
[2026-03-14 06:18:11] 2026-03-14 13:17:34,623 | WARNING  | 
[2026-03-14 06:18:11] [begin log extracts]
[2026-03-14 06:18:11] - Log from pilotlog.txt -
[2026-03-14 06:18:11] 2026-03-14 13:17:34,581 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-7042039848/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,581 | INFO     | extracted standard info from prmon json
[2026-03-14 06:18:11] 2026-03-14 13:17:34,582 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 06:18:11] 2026-03-14 13:17:34,582 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | WARNING  | wrong length of table data, x=[1773494098.0], y=[1507.0] (must be same and length>=4)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,583 | INFO     | could have reported an average CPU frequency of 1383 MHz (4 samples)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . Timing measurements:
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . get job = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . initial setup = 31 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload setup = 37 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-in = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . payload execution = 69 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . stage-out = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | . log creation = 0 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,584 | INFO     | ..............................
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-03-14 06:18:11] 2026-03-14 13:17:34,585 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-7042039848/pilotlog.txt
[2026-03-14 06:18:11] [end log extracts]
[2026-03-14 06:18:11] 2026-03-14 13:17:34,623 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,624 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-03-14 06:18:11] 2026-03-14 13:17:34,782 | INFO     | 
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | job summary report
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | --------------------------------------------------
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | PanDA job id: 7042039848
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | task id: 48955015
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-03-14 06:15:28,397 CRITICAL Transform executor raised TransformValidationExceptio
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | pilot state: failed 
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | transexitcode: 65
[2026-03-14 06:18:11] 2026-03-14 13:17:34,783 | INFO     | exeerrorcode: 65
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | exitcode: 65
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | cpuconsumptiontime: 23 s
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | nevents: 0
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | neventsw: 0
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | pid: 3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | pgrp: 3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | corecount: 12
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | event service: False
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | sizes: {0: 2279146, 1: 2279828, 2: 2279856, 3: 2280317, 109: 2303535, 112: 2308011, 229: 2308149}
[2026-03-14 06:18:11] 2026-03-14 13:17:34,784 | INFO     | --------------------------------------------------
[2026-03-14 06:18:11] 2026-03-14 13:17:34,785 | INFO     | 
[2026-03-14 06:18:11] 2026-03-14 13:17:34,785 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-03-14 06:18:11] 2026-03-14 13:17:35,239 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,240 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,241 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | job 7042039848 has completed (purged errors)
[2026-03-14 06:18:11] 2026-03-14 13:17:35,242 | INFO     | overall cleanup function is called
[2026-03-14 06:18:11] 2026-03-14 13:17:36,250 | INFO     | --- collectZombieJob: --- 10, [3882975]
[2026-03-14 06:18:11] 2026-03-14 13:17:36,254 | INFO     | zombie collector waiting for pid 3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:36,254 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 06:18:11] 2026-03-14 13:17:36,254 | INFO     | collected zombie processes
[2026-03-14 06:18:11] 2026-03-14 13:17:36,254 | INFO     | will attempt to kill all subprocesses of pid=3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:37,362 | INFO     | process IDs to be killed: [3882975] (in reverse order)
[2026-03-14 06:18:11] 2026-03-14 13:17:37,550 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 06:18:11] 2026-03-14 13:17:37,551 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 06:18:11] 2026-03-14 13:17:37,565 | INFO     | did not find any defunct processes belonging to 3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:37,579 | INFO     | did not find any defunct processes belonging to 3882975
[2026-03-14 06:18:11] 2026-03-14 13:17:37,579 | INFO     | ready for new job
[2026-03-14 06:18:11] 2026-03-14 13:17:37,579 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 06:18:11] 2026-03-14 13:17:37,582 | INFO     | **************************************
[2026-03-14 06:18:11] 2026-03-14 13:17:37,583 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-14 06:18:11] 2026-03-14 13:17:37,583 | INFO     | **************************************
[2026-03-14 06:18:11] 2026-03-14 13:17:37,583 | INFO     | 
[2026-03-14 06:18:11] 2026-03-14 13:17:37,611 | INFO     | architecture information:
[2026-03-14 06:18:11] 2026-03-14 13:17:37,620 | INFO     | executing command: cat /etc/os-release
[2026-03-14 06:18:11] 2026-03-14 13:17:37,673 | INFO     | cat /etc/os-release:
[2026-03-14 06:18:11] NAME="CentOS Linux"
[2026-03-14 06:18:11] VERSION="7 (Core)"
[2026-03-14 06:18:11] ID="centos"
[2026-03-14 06:18:11] ID_LIKE="rhel fedora"
[2026-03-14 06:18:11] VERSION_ID="7"
[2026-03-14 06:18:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 06:18:11] ANSI_COLOR="0;31"
[2026-03-14 06:18:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 06:18:11] HOME_URL="https://www.centos.org/"
[2026-03-14 06:18:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 06:18:11] 
[2026-03-14 06:18:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 06:18:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 06:18:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 06:18:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 06:18:11] 
[2026-03-14 06:18:11] 2026-03-14 13:17:37,673 | INFO     | **************************************
[2026-03-14 06:18:11] 2026-03-14 13:17:38,177 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-03-14 06:18:11] 2026-03-14 13:17:38,233 | INFO     | sufficient remaining disk space (2116400709632 B)
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | INFO     | update_server=False
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:18:11] 2026-03-14 13:17:38,234 | INFO     | aborting loop
[2026-03-14 06:18:11] 2026-03-14 13:17:38,524 | INFO     | all job control threads have been joined
[2026-03-14 06:18:11] 2026-03-14 13:17:38,741 | INFO     | all data control threads have been joined
[2026-03-14 06:18:11] 2026-03-14 13:17:38,891 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 06:18:11] 2026-03-14 13:17:39,132 | INFO     | all payload control threads have been joined
[2026-03-14 06:18:11] 2026-03-14 13:17:39,240 | INFO     | [job] retrieve thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,244 | INFO     | [job] job monitor thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,531 | INFO     | [job] control thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,543 | INFO     | [job] validate thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,687 | INFO     | [data] copytool_in thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,748 | INFO     | [data] control thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,791 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:39,795 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:18:11] 2026-03-14 13:17:39,996 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,139 | INFO     | [payload] control thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,178 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,196 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,686 | INFO     | [payload] validate_post thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,710 | INFO     | [payload] failed_post thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,812 | INFO     | [job] queue monitor thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:40,898 | INFO     | [data] copytool_out thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:41,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 06:18:11] 2026-03-14 13:17:42,062 | INFO     | [monitor] cgroup control has ended
[2026-03-14 06:18:11] 2026-03-14 13:17:45,479 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 06:18:11] 2026-03-14 13:17:46,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140169731008320)>', '<ExcThread(monitor, started 140169160136448)>']
[2026-03-14 06:18:11] 2026-03-14 13:17:51,763 | INFO     | all workflow threads have been joined
[2026-03-14 06:18:11] 2026-03-14 13:17:51,764 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 06:18:11] 2026-03-14 13:17:51,764 | INFO     | traces error code: 0
[2026-03-14 06:18:11] 2026-03-14 13:17:51,764 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | INFO     | PID=3878159 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | INFO     | .. there are 35 such processes running
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 06:18:11] 2026-03-14 13:18:09,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 06:18:11] 2026-03-14 13:18:09,473 | INFO     | [monitor] control thread has ended
[2026-03-14 06:18:11] 2026-03-14 13:18:09,604 [wrapper] ==== pilot stdout END ====
[2026-03-14 06:18:11] 2026-03-14 13:18:09,630 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 06:18:11] 2026-03-14 13:18:09,636 [wrapper] pilotpid: 3878159
[2026-03-14 06:18:11] 2026-03-14 13:18:09,668 [wrapper] Pilot exit status: 0
[2026-03-14 06:18:11] 2026-03-14 13:18:09,833 [wrapper] pandaids: 7042039848
[2026-03-14 06:18:11] 2026-03-14 13:18:10,218 [wrapper] cleanup supervisor_pilot 3878165 3878160
[2026-03-14 06:18:11] 2026-03-14 13:18:10,257 [wrapper] Test setup, not cleaning
[2026-03-14 06:18:11] 2026-03-14 13:18:10,283 [wrapper] apfmon messages muted
[2026-03-14 06:18:11] 2026-03-14 13:18:10,307 [wrapper] ==== wrapper stdout END ====
[2026-03-14 06:18:11] 2026-03-14 13:18:10,337 [wrapper] ==== wrapper stderr END ====
[2026-03-14 06:18:11]  *** Error codes and diagnostics ***
[2026-03-14 06:18:11]     "exeErrorCode": 65,
[2026-03-14 06:18:11]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-03-14 06:18:11]     "pilotErrorCode": 1305,
[2026-03-14 06:18:11]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-03-14 06:18:11]  *** Listing of results directory ***
[2026-03-14 06:18:11] total 434904
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc    584627 Mar  9 21:09 pilot3.tar.gz
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc      5111 Mar  9 21:46 queuedata.json
[2026-03-14 06:18:11] -rwx------. 1 boinc boinc     36322 Mar  9 21:46 runpilot2-wrapper.sh
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc       100 Mar 14 06:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 06:18:11] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 06:12 run_atlas
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc       105 Mar 14 06:12 job.xml
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc      6593 Mar 14 06:12 init_data.xml
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc 441187701 Mar 14 06:12 EVNT.46701403._002313.pool.root.1
[2026-03-14 06:18:11] drwxrwx--x. 2 boinc boinc      4096 Mar 14 06:12 shared
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc    597967 Mar 14 06:12 input.tar.gz
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc     15845 Mar 14 06:12 start_atlas.sh
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc         0 Mar 14 06:12 boinc_lockfile
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc      2571 Mar 14 06:12 pandaJob.out
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc   1004579 Mar 14 06:13 agis_schedconf.cvmfs.json
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc   1511579 Mar 14 06:13 agis_ddmendpoints.agis.ALL.json
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc       445 Mar 14 06:13 workernode_map.json
[2026-03-14 06:18:11] drwx------. 5 boinc boinc      4096 Mar 14 06:13 pilot3
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc       525 Mar 14 06:15 boinc_task_state.xml
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc       958 Mar 14 06:15 memory_monitor_summary.json
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc     22476 Mar 14 06:15 log.48955015._012866.job.log.tgz.1
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc        95 Mar 14 06:17 pilot_heartbeat.json
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc      7022 Mar 14 06:17 heartbeat.json
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc      8192 Mar 14 06:18 boinc_mmap_file
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc        23 Mar 14 06:18 wrapper_checkpoint.txt
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc       823 Mar 14 06:18 pilotlog.txt
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc     87760 Mar 14 06:18 log.48955015._012866.job.log.1
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc       188 Mar 14 06:18 output.list
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc       620 Mar 14 06:18 runtime_log
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc    133120 Mar 14 06:18 result.tar.gz
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc      8635 Mar 14 06:18 runtime_log.err
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc       645 Mar 14 06:18 jRxMDmQA4J9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmB9eLDmYCueOo.diag
[2026-03-14 06:18:11] -rw-r--r--. 1 boinc boinc     21780 Mar 14 06:18 stderr.txt
[2026-03-14 06:18:11] No HITS result produced
[2026-03-14 06:18:11]  *** Contents of shared directory: ***
[2026-03-14 06:18:11] total 431584
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc 441187701 Mar 14 06:12 ATLAS.root_0
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc    597967 Mar 14 06:12 input.tar.gz
[2026-03-14 06:18:11] -rw-r--r--. 2 boinc boinc     15845 Mar 14 06:12 start_atlas.sh
[2026-03-14 06:18:11] -rw-------. 1 boinc boinc    133120 Mar 14 06:18 result.tar.gz
06:18:12 (3874307): run_atlas exited; CPU time 35.239121
06:18:12 (3874307): called boinc_finish(0)

</stderr_txt>
]]>

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