Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:17:05 (652859): wrapper (7.7.26015): starting
00:17:05 (652859): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 00:17:05] Arguments: --nthreads 4
[2026-03-15 00:17:05] Threads: 4
[2026-03-15 00:17:05] Checking for CVMFS
[2026-03-15 00:17:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 00:17:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 00:17:06] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 00:17:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 00:17:06] 2.9.2.0 141980 24945 104056 157295 3 1 30717523 36864001 0 130560 0 13061440 99.986 937534 7596 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 00:17:06] CVMFS is ok
[2026-03-15 00:17:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 00:17:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 00:17:06] Further information can be found at the LHC@home message board.
[2026-03-15 00:17:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 00:17:06] Checking for apptainer binary...
[2026-03-15 00:17:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 00:17:06] Running /usr/bin/apptainer --version
[2026-03-15 00:17:06] apptainer version 1.4.1-1.1
[2026-03-15 00:17:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 00:17:06] magicA244a
[2026-03-15 00:17:06] apptainer works
[2026-03-15 00:17:06] Set ATHENA_PROC_NUMBER=4
[2026-03-15 00:17:06] Set ATHENA_CORE_NUMBER=4
[2026-03-15 00:17:06] Starting ATLAS job with PandaID=7046304920
[2026-03-15 00:17:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 01:18:31]  *** The last 200 lines of the pilot log: ***
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | job 7046304920 has completed (purged errors)
[2026-03-15 01:18:31] 2026-03-15 00:17:59,854 | INFO     | overall cleanup function is called
[2026-03-15 01:18:31] 2026-03-15 00:18:00,860 | INFO     | --- collectZombieJob: --- 10, [661491]
[2026-03-15 01:18:31] 2026-03-15 00:18:00,860 | INFO     | zombie collector waiting for pid 661491
[2026-03-15 01:18:31] 2026-03-15 00:18:00,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 01:18:31] 2026-03-15 00:18:00,860 | INFO     | collected zombie processes
[2026-03-15 01:18:31] 2026-03-15 00:18:00,860 | INFO     | will attempt to kill all subprocesses of pid=661491
[2026-03-15 01:18:31] 2026-03-15 00:18:00,901 | INFO     | process IDs to be killed: [661491] (in reverse order)
[2026-03-15 01:18:31] 2026-03-15 00:18:00,933 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 01:18:31] 2026-03-15 00:18:00,933 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 01:18:31] 2026-03-15 00:18:00,934 | INFO     | did not find any defunct processes belonging to 661491
[2026-03-15 01:18:31] 2026-03-15 00:18:00,935 | INFO     | did not find any defunct processes belonging to 661491
[2026-03-15 01:18:31] 2026-03-15 00:18:00,935 | INFO     | ready for new job
[2026-03-15 01:18:31] 2026-03-15 00:18:00,936 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 01:18:31] 2026-03-15 00:18:00,936 | INFO     | **************************************
[2026-03-15 01:18:31] 2026-03-15 00:18:00,936 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 01:18:31] 2026-03-15 00:18:00,936 | INFO     | **************************************
[2026-03-15 01:18:31] 2026-03-15 00:18:00,936 | INFO     | 
[2026-03-15 01:18:31] 2026-03-15 00:18:00,937 | INFO     | architecture information:
[2026-03-15 01:18:31] 2026-03-15 00:18:00,937 | INFO     | executing command: cat /etc/os-release
[2026-03-15 01:18:31] 2026-03-15 00:18:00,947 | INFO     | cat /etc/os-release:
[2026-03-15 01:18:31] NAME="CentOS Linux"
[2026-03-15 01:18:31] VERSION="7 (Core)"
[2026-03-15 01:18:31] ID="centos"
[2026-03-15 01:18:31] ID_LIKE="rhel fedora"
[2026-03-15 01:18:31] VERSION_ID="7"
[2026-03-15 01:18:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 01:18:31] ANSI_COLOR="0;31"
[2026-03-15 01:18:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 01:18:31] HOME_URL="https://www.centos.org/"
[2026-03-15 01:18:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 01:18:31] 
[2026-03-15 01:18:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 01:18:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 01:18:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 01:18:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 01:18:31] 
[2026-03-15 01:18:31] 2026-03-15 00:18:00,947 | INFO     | **************************************
[2026-03-15 01:18:31] 2026-03-15 00:18:01,451 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | INFO     | sufficient remaining disk space (326199410688 B)
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | INFO     | update_server=False
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 01:18:31] 2026-03-15 00:18:01,465 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 01:18:31] 2026-03-15 00:18:01,466 | INFO     | aborting loop
[2026-03-15 01:18:31] 2026-03-15 00:18:01,466 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 01:18:31] 2026-03-15 00:18:01,541 | INFO     | all data control threads have been joined
[2026-03-15 01:18:31] 2026-03-15 00:18:02,471 | INFO     | [job] job monitor thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,471 | INFO     | [job] retrieve thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,472 | INFO     | [job] queue monitor thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,547 | INFO     | [data] control thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,556 | INFO     | all payload control threads have been joined
[2026-03-15 01:18:31] 2026-03-15 00:18:02,654 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,655 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 01:18:31] 2026-03-15 00:18:02,754 | INFO     | [payload] validate_post thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:02,894 | INFO     | all job control threads have been joined
[2026-03-15 01:18:31] 2026-03-15 00:18:02,964 | INFO     | [payload] failed_post thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,284 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 01:18:31] 2026-03-15 00:18:03,289 | INFO     | [job] validate thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,385 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,413 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,561 | INFO     | [payload] control thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,595 | INFO     | [data] copytool_in thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,728 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:03,900 | INFO     | [job] control thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:04,662 | INFO     | [data] copytool_out thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:07,291 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 01:18:31] 2026-03-15 00:18:20,488 | INFO     | [monitor] cgroup control has ended
[2026-03-15 01:18:31] 2026-03-15 00:18:20,825 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140113341212480)>', '<ExcThread(monitor, started 140112620934912)>']
[2026-03-15 01:18:31] 2026-03-15 00:18:25,829 | INFO     | all workflow threads have been joined
[2026-03-15 01:18:31] 2026-03-15 00:18:25,829 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 01:18:31] 2026-03-15 00:18:25,829 | INFO     | traces error code: 0
[2026-03-15 01:18:31] 2026-03-15 00:18:25,829 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | INFO     | PID=656977 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 01:18:31] 2026-03-15 00:18:31,224 | INFO     | [monitor] control thread has ended
[2026-03-15 01:18:31] 2026-03-15 00:18:31,279 [wrapper] ==== pilot stdout END ====
[2026-03-15 01:18:31] 2026-03-15 00:18:31,282 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 01:18:31] 2026-03-15 00:18:31,285 [wrapper] pilotpid: 656977
[2026-03-15 01:18:31] 2026-03-15 00:18:31,287 [wrapper] Pilot exit status: 0
[2026-03-15 01:18:31] 2026-03-15 00:18:31,295 [wrapper] pandaids: 7046304920
[2026-03-15 01:18:31] 2026-03-15 00:18:31,314 [wrapper] cleanup supervisor_pilot  666776 656978
[2026-03-15 01:18:31] 2026-03-15 00:18:31,316 [wrapper] Test setup, not cleaning
[2026-03-15 01:18:31] 2026-03-15 00:18:31,319 [wrapper] apfmon messages muted
[2026-03-15 01:18:31] 2026-03-15 00:18:31,322 [wrapper] ==== wrapper stdout END ====
[2026-03-15 01:18:31] 2026-03-15 00:18:31,325 [wrapper] ==== wrapper stderr END ====
[2026-03-15 01:18:31]  *** Error codes and diagnostics ***
[2026-03-15 01:18:31]     "exeErrorCode": 0,
[2026-03-15 01:18:31]     "exeErrorDiag": "",
[2026-03-15 01:18:31]     "pilotErrorCode": 0,
[2026-03-15 01:18:31]     "pilotErrorDiag": "",
[2026-03-15 01:18:31]  *** Listing of results directory ***
[2026-03-15 01:18:31] total 618808
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc      5111 Mar 14 09:37 queuedata.json
[2026-03-15 01:18:31] -rwx------ 1 boinc boinc     36322 Mar 14 09:37 runpilot2-wrapper.sh
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc    585013 Mar 14 09:39 pilot3.tar.gz
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc       100 Mar 15 00:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 01:18:31] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 00:17 run_atlas
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc       105 Mar 15 00:17 job.xml
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc 440850000 Mar 15 00:17 EVNT.46701403._001805.pool.root.1
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc    597533 Mar 15 00:17 input.tar.gz
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:17 start_atlas.sh
[2026-03-15 01:18:31] drwxrwx--x 2 boinc boinc      4096 Mar 15 00:17 shared
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:17 boinc_setup_complete
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc      6438 Mar 15 00:17 init_data.xml
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:17 boinc_lockfile
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc      2563 Mar 15 00:17 pandaJob.out
[2026-03-15 01:18:31] -rw------- 1 boinc boinc   1006481 Mar 15 00:17 agis_schedconf.cvmfs.json
[2026-03-15 01:18:31] -rw------- 1 boinc boinc   1511579 Mar 15 00:17 agis_ddmendpoints.agis.ALL.json
[2026-03-15 01:18:31] -rw------- 1 boinc boinc       426 Mar 15 00:17 workernode_map.json
[2026-03-15 01:18:31] drwx------ 5 boinc boinc      4096 Mar 15 00:17 pilot3
[2026-03-15 01:18:31] -rw------- 1 boinc boinc        95 Mar 15 01:17 pilot_heartbeat.json
[2026-03-15 01:18:31] -rw------- 1 boinc boinc 187289485 Mar 15 01:17 HITS.48955010._039263.pool.root.1
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc       530 Mar 15 01:17 boinc_task_state.xml
[2026-03-15 01:18:31] -rw------- 1 boinc boinc      1016 Mar 15 01:17 memory_monitor_summary.json
[2026-03-15 01:18:31] -rw------- 1 boinc boinc    254188 Mar 15 01:17 log.48955010._039263.job.log.tgz.1
[2026-03-15 01:18:31] -rw------- 1 boinc boinc      6308 Mar 15 01:17 heartbeat.json
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc        27 Mar 15 01:18 wrapper_checkpoint.txt
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc      8192 Mar 15 01:18 boinc_mmap_file
[2026-03-15 01:18:31] -rw------- 1 boinc boinc       746 Mar 15 01:18 pilotlog.txt
[2026-03-15 01:18:31] -rw------- 1 boinc boinc    548041 Mar 15 01:18 log.48955010._039263.job.log.1
[2026-03-15 01:18:31] -rw------- 1 boinc boinc       357 Mar 15 01:18 output.list
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc       620 Mar 15 01:18 runtime_log
[2026-03-15 01:18:31] -rw------- 1 boinc boinc    819200 Mar 15 01:18 result.tar.gz
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc      8916 Mar 15 01:18 runtime_log.err
[2026-03-15 01:18:31] -rw------- 1 boinc boinc       661 Mar 15 01:18 6QrNDmOgZL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYIsLDmGAsURo.diag
[2026-03-15 01:18:31] -rw-r--r-- 1 boinc boinc     11716 Mar 15 01:18 stderr.txt
[2026-03-15 01:18:31] HITS file was successfully produced:
[2026-03-15 01:18:31] -rw------- 1 boinc boinc 187289485 Mar 15 01:17 shared/HITS.pool.root.1
[2026-03-15 01:18:31]  *** Contents of shared directory: ***
[2026-03-15 01:18:31] total 614824
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc 440850000 Mar 15 00:17 ATLAS.root_0
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc    597533 Mar 15 00:17 input.tar.gz
[2026-03-15 01:18:31] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:17 start_atlas.sh
[2026-03-15 01:18:31] -rw------- 1 boinc boinc 187289485 Mar 15 01:17 HITS.pool.root.1
[2026-03-15 01:18:31] -rw------- 1 boinc boinc    819200 Mar 15 01:18 result.tar.gz
01:18:33 (652859): run_atlas exited; CPU time 13249.481103
01:18:33 (652859): called boinc_finish(0)

</stderr_txt>
]]>

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