Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:49:38 (2859038): wrapper (7.7.26015): starting
10:49:38 (2859038): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 10:49:38] Arguments: --nthreads 4
[2026-03-15 10:49:38] Threads: 4
[2026-03-15 10:49:38] Checking for CVMFS
[2026-03-15 10:49:38] No cvmfs_config command found, will try listing directly
[2026-03-15 10:49:38] CVMFS is ok
[2026-03-15 10:49:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 10:49:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 10:49:38] Further information can be found at the LHC@home message board.
[2026-03-15 10:49:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 10:49:38] Checking for apptainer binary...
[2026-03-15 10:49:38] which: no apptainer in ((null))
[2026-03-15 10:49:38] apptainer is not installed, using version from CVMFS
[2026-03-15 10:49:38] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 10:49:38] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-15 10:49:38] apptainer works
[2026-03-15 10:49:38] Set ATHENA_PROC_NUMBER=4
[2026-03-15 10:49:38] Set ATHENA_CORE_NUMBER=4
[2026-03-15 10:49:38] Starting ATLAS job with PandaID=7045287142
[2026-03-15 10:49:38] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 14:00:20]  *** The last 200 lines of the pilot log: ***
[2026-03-15 14:00:20] 2026-03-15 12:59:18,155 | INFO     | job 7045287142 has finished - writing final server update
[2026-03-15 14:00:20] 2026-03-15 12:59:18,155 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_571112/.job.ad'
[2026-03-15 14:00:20] 2026-03-15 12:59:18,156 | INFO     | total number of processed events: 400 (read)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,167 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7045287142/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,168 | INFO     | extracted standard info from prmon json
[2026-03-15 14:00:20] 2026-03-15 12:59:18,168 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 14:00:20] 2026-03-15 12:59:18,168 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 14:00:20] 2026-03-15 12:59:18,168 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 14:00:20] 2026-03-15 12:59:18,168 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 14:00:20] 2026-03-15 12:59:18,172 | INFO     | fitting pss+swap vs Time
[2026-03-15 14:00:20] 2026-03-15 12:59:18,172 | INFO     | sum of square deviations: 1995283922.5
[2026-03-15 14:00:20] 2026-03-15 12:59:18,177 | INFO     | sum of deviations: 22017146538.500008
[2026-03-15 14:00:20] 2026-03-15 12:59:18,177 | INFO     | mean x: 1773573858.5
[2026-03-15 14:00:20] 2026-03-15 12:59:18,178 | INFO     | mean y: 2316440.629032258
[2026-03-15 14:00:20] 2026-03-15 12:59:18,178 | INFO     | intersect: -19568349718.26063
[2026-03-15 14:00:20] 2026-03-15 12:59:18,178 | INFO     | chi2: 1.3519768462787947
[2026-03-15 14:00:20] 2026-03-15 12:59:18,178 | INFO     | sum of square deviations: 1838657730.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,179 | INFO     | sum of deviations: 21288557079.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | mean x: 1773573706.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | mean y: 2315731.0607734807
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | intersect: -20532678062.479347
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | chi2: 1.3529445062608536
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | current chi2=1.3529445062608536 (change=-0.07157370961805658 %)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,180 | INFO     | right removable region: 180
[2026-03-15 14:00:20] 2026-03-15 12:59:18,181 | INFO     | sum of square deviations: 1838657730.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | sum of deviations: -2273598771.000001
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | mean x: 1773574011.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | mean y: 2339777.718232044
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | intersect: 2195459043.9598846
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | chi2: 0.012260281370464903
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | current chi2=0.012260281370464903 (change=99.09315892471011 %)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,182 | INFO     | sum of square deviations: 1690450300.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,183 | INFO     | sum of deviations: -1563257980.0000005
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | mean x: 1773574163.5
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | mean y: 2339041.5454545454
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | intersect: 1642466505.9336123
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | chi2: 0.01177047775276113
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | current chi2=0.01177047775276113 (change=3.9950438566908755 %)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,184 | INFO     | left removable region: 20
[2026-03-15 14:00:20] 2026-03-15 12:59:18,185 | INFO     | sum of square deviations: 1270051720.0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,185 | INFO     | sum of deviations: 767228689.5
[2026-03-15 14:00:20] 2026-03-15 12:59:18,185 | INFO     | mean x: 1773574285.5
[2026-03-15 14:00:20] 2026-03-15 12:59:18,186 | INFO     | mean y: 2335996.15625
[2026-03-15 14:00:20] 2026-03-15 12:59:18,186 | INFO     | intersect: -1069066887.1807089
[2026-03-15 14:00:20] 2026-03-15 12:59:18,186 | INFO     | chi2: 0.00769644143449439
[2026-03-15 14:00:20] 2026-03-15 12:59:18,186 | INFO     | current memory leak: 0.60 B/s (using 160 data points, chi2=0.01)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | could have reported an average CPU frequency of 2568 MHz (10 samples)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | ..............................
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . Timing measurements:
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . get job = 0 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . initial setup = 6 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . payload setup = 5 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . stage-in = 0 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . payload execution = 11339 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . stage-out = 1 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | . log creation = 0 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,187 | INFO     | ..............................
[2026-03-15 14:00:20] 2026-03-15 12:59:18,280 | INFO     | 
[2026-03-15 14:00:20] 2026-03-15 12:59:18,280 | INFO     | job summary report
[2026-03-15 14:00:20] 2026-03-15 12:59:18,280 | INFO     | --------------------------------------------------
[2026-03-15 14:00:20] 2026-03-15 12:59:18,280 | INFO     | PanDA job id: 7045287142
[2026-03-15 14:00:20] 2026-03-15 12:59:18,280 | INFO     | task id: 48955010
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | errors: (none)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | pilot state: finished 
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | transexitcode: 0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | exeerrorcode: 0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | exeerrordiag: 
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | exitcode: 0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | exitmsg: OK
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | cpuconsumptiontime: 41909 s
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | nevents: 400
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | neventsw: 0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | pid: 2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | pgrp: 2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:18,281 | INFO     | corecount: 4
[2026-03-15 14:00:20] 2026-03-15 12:59:18,282 | INFO     | event service: False
[2026-03-15 14:00:20] 2026-03-15 12:59:18,282 | INFO     | sizes: {0: 2279759, 1: 2280220, 11: 2280220, 11348: 2309676, 11350: 2318696, 11352: 2319074}
[2026-03-15 14:00:20] 2026-03-15 12:59:18,282 | INFO     | --------------------------------------------------
[2026-03-15 14:00:20] 2026-03-15 12:59:18,282 | INFO     | 
[2026-03-15 14:00:20] 2026-03-15 12:59:18,282 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-03-15 14:00:20] 2026-03-15 12:59:18,303 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,303 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,303 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,305 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,305 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,305 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,305 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,306 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 14:00:20] 2026-03-15 12:59:18,306 | INFO     | job 7045287142 has completed (purged errors)
[2026-03-15 14:00:20] 2026-03-15 12:59:18,306 | INFO     | overall cleanup function is called
[2026-03-15 14:00:20] 2026-03-15 12:59:19,059 | INFO     | PID=2863057 has CPU usage=11.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-15 14:00:20] 2026-03-15 12:59:19,059 | INFO     | .. there are 13 such processes running
[2026-03-15 14:00:20] 2026-03-15 12:59:19,314 | INFO     | --- collectZombieJob: --- 10, [2868247]
[2026-03-15 14:00:20] 2026-03-15 12:59:19,314 | INFO     | zombie collector waiting for pid 2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:19,314 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 14:00:20] 2026-03-15 12:59:19,314 | INFO     | collected zombie processes
[2026-03-15 14:00:20] 2026-03-15 12:59:19,315 | INFO     | will attempt to kill all subprocesses of pid=2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:19,695 | INFO     | process IDs to be killed: [2868247] (in reverse order)
[2026-03-15 14:00:20] 2026-03-15 12:59:19,873 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 14:00:20] 2026-03-15 12:59:19,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 14:00:20] 2026-03-15 12:59:19,890 | INFO     | did not find any defunct processes belonging to 2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:19,902 | INFO     | did not find any defunct processes belonging to 2868247
[2026-03-15 14:00:20] 2026-03-15 12:59:19,902 | INFO     | ready for new job
[2026-03-15 14:00:20] 2026-03-15 12:59:19,902 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 14:00:20] 2026-03-15 12:59:19,905 | INFO     | **************************************
[2026-03-15 14:00:20] 2026-03-15 12:59:19,905 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 14:00:20] 2026-03-15 12:59:19,905 | INFO     | **************************************
[2026-03-15 14:00:20] 2026-03-15 12:59:19,905 | INFO     | 
[2026-03-15 14:00:20] 2026-03-15 12:59:19,909 | INFO     | architecture information:
[2026-03-15 14:00:20] 2026-03-15 12:59:19,909 | INFO     | executing command: cat /etc/os-release
[2026-03-15 14:00:20] 2026-03-15 12:59:19,926 | INFO     | cat /etc/os-release:
[2026-03-15 14:00:20] NAME="CentOS Linux"
[2026-03-15 14:00:20] VERSION="7 (Core)"
[2026-03-15 14:00:20] ID="centos"
[2026-03-15 14:00:20] ID_LIKE="rhel fedora"
[2026-03-15 14:00:20] VERSION_ID="7"
[2026-03-15 14:00:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 14:00:20] ANSI_COLOR="0;31"
[2026-03-15 14:00:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 14:00:20] HOME_URL="https://www.centos.org/"
[2026-03-15 14:00:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 14:00:20] 
[2026-03-15 14:00:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 14:00:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 14:00:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 14:00:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 14:00:20] 
[2026-03-15 14:00:20] 2026-03-15 12:59:19,926 | INFO     | **************************************
[2026-03-15 14:00:20] 2026-03-15 12:59:20,429 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-03-15 14:00:20] 2026-03-15 12:59:20,458 | INFO     | sufficient remaining disk space (31911313408 B)
[2026-03-15 14:00:20] 2026-03-15 12:59:20,459 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 14:00:20] 2026-03-15 12:59:20,459 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 14:00:20] 2026-03-15 12:59:20,459 | INFO     | update_server=False
[2026-03-15 14:00:20] 2026-03-15 12:59:20,459 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 14:00:20] 2026-03-15 12:59:20,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 14:00:20] 2026-03-15 12:59:20,590 | WARNING  | process 2868247 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 14:00:20] 2026-03-15 12:59:20,927 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 14:00:20] 2026-03-15 12:59:20,957 | INFO     | all data control threads have been joined
[2026-03-15 14:00:20] 2026-03-15 12:59:21,277 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 14:00:20] 2026-03-15 12:59:21,358 | INFO     | number of running child processes to parent process 2868247: 1
[2026-03-15 14:00:20] 2026-03-15 12:59:21,359 | INFO     | maximum number of monitored processes: 6
[2026-03-15 14:00:20] 2026-03-15 12:59:21,359 | INFO     | aborting job monitoring since job object (job id=7045287142) has expired
[2026-03-15 14:00:20] 2026-03-15 12:59:21,359 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:00:20] 2026-03-15 12:59:21,359 | INFO     | will abort loop
[2026-03-15 14:00:20] 2026-03-15 12:59:21,464 | INFO     | [job] retrieve thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:21,735 | INFO     | all payload control threads have been joined
[2026-03-15 14:00:20] 2026-03-15 12:59:21,962 | INFO     | [data] control thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:21,988 | INFO     | [payload] validate_post thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,096 | INFO     | all job control threads have been joined
[2026-03-15 14:00:20] 2026-03-15 12:59:22,112 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,364 | INFO     | [job] job monitor thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,516 | INFO     | [job] validate thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,521 | INFO     | [payload] failed_post thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,740 | INFO     | [payload] control thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,816 | INFO     | [data] copytool_in thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,897 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:22,921 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:23,102 | INFO     | [job] control thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:23,286 | INFO     | [data] copytool_out thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:23,295 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:00:20] 2026-03-15 12:59:24,300 | INFO     | [job] queue monitor thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:24,474 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:31,004 | INFO     | job.realtimelogging is not enabled
[2026-03-15 14:00:20] 2026-03-15 12:59:32,009 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 14:00:20] 2026-03-15 12:59:51,700 | INFO     | PID=2863057 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 14:00:20] 2026-03-15 12:59:51,700 | INFO     | .. there are 13 such processes running
[2026-03-15 14:00:20] 2026-03-15 12:59:51,700 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 14:00:20] 2026-03-15 12:59:51,700 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 14:00:20] 2026-03-15 12:59:51,700 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 14:00:20] 2026-03-15 13:00:12,946 | INFO     | [monitor] cgroup control has ended
[2026-03-15 14:00:20] 2026-03-15 13:00:14,671 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22572606338880)>', '<ExcThread(monitor, started 22572367623936)>']
[2026-03-15 14:00:20] 2026-03-15 13:00:14,822 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 14:00:20] 2026-03-15 13:00:14,822 | INFO     | [monitor] control thread has ended
[2026-03-15 14:00:20] 2026-03-15 13:00:19,696 | INFO     | all workflow threads have been joined
[2026-03-15 14:00:20] 2026-03-15 13:00:19,696 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 14:00:20] 2026-03-15 13:00:19,696 | INFO     | traces error code: 0
[2026-03-15 14:00:20] 2026-03-15 13:00:19,697 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 14:00:20] 2026-03-15 13:00:19,830 [wrapper] ==== pilot stdout END ====
[2026-03-15 14:00:20] 2026-03-15 13:00:19,840 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 14:00:20] 2026-03-15 13:00:19,843 [wrapper] pilotpid: 2863057
[2026-03-15 14:00:20] 2026-03-15 13:00:19,847 [wrapper] Pilot exit status: 0
[2026-03-15 14:00:20] 2026-03-15 13:00:19,901 [wrapper] pandaids: 7045287142
[2026-03-15 14:00:20] 2026-03-15 13:00:20,000 [wrapper] cleanup supervisor_pilot 3076916 2863058
[2026-03-15 14:00:20] 2026-03-15 13:00:20,004 [wrapper] Test setup, not cleaning
[2026-03-15 14:00:20] 2026-03-15 13:00:20,016 [wrapper] apfmon messages muted
[2026-03-15 14:00:20] 2026-03-15 13:00:20,019 [wrapper] ==== wrapper stdout END ====
[2026-03-15 14:00:20] 2026-03-15 13:00:20,022 [wrapper] ==== wrapper stderr END ====
[2026-03-15 14:00:20]  *** Error codes and diagnostics ***
[2026-03-15 14:00:20]     "exeErrorCode": 0,
[2026-03-15 14:00:20]     "exeErrorDiag": "",
[2026-03-15 14:00:20]     "pilotErrorCode": 0,
[2026-03-15 14:00:20]     "pilotErrorDiag": "",
[2026-03-15 14:00:20]  *** Listing of results directory ***
[2026-03-15 14:00:20] total 622524
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc    585013 Mar 14 00:38 pilot3.tar.gz
[2026-03-15 14:00:20] -rwx------. 1 boinc boinc     36322 Mar 14 00:38 runpilot2-wrapper.sh
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc      5111 Mar 14 00:39 queuedata.json
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc       100 Mar 15 10:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 14:00:20] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 10:49 run_atlas
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc       105 Mar 15 10:49 job.xml
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc      6563 Mar 15 10:49 init_data.xml
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc 440830555 Mar 15 10:49 EVNT.46701403._001706.pool.root.1
[2026-03-15 14:00:20] drwxrwx--x. 2 boinc boinc      4096 Mar 15 10:49 shared
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc    597537 Mar 15 10:49 input.tar.gz
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc     15845 Mar 15 10:49 start_atlas.sh
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc         0 Mar 15 10:49 boinc_lockfile
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc      2564 Mar 15 10:49 pandaJob.out
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc   1006481 Mar 15 10:49 agis_schedconf.cvmfs.json
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc       452 Mar 15 10:49 workernode_map.json
[2026-03-15 14:00:20] drwx------. 5 boinc boinc      4096 Mar 15 10:49 pilot3
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc 188694245 Mar 15 13:58 HITS.48955010._035586.pool.root.1
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc       531 Mar 15 13:58 boinc_task_state.xml
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc        95 Mar 15 13:59 pilot_heartbeat.json
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc      1030 Mar 15 13:59 memory_monitor_summary.json
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc   1511579 Mar 15 13:59 agis_ddmendpoints.agis.ALL.json
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc    404848 Mar 15 13:59 log.48955010._035586.job.log.tgz.1
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc      6405 Mar 15 13:59 heartbeat.json
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc      8192 Mar 15 13:59 boinc_mmap_file
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc        28 Mar 15 13:59 wrapper_checkpoint.txt
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc      5433 Mar 15 14:00 pilotlog.txt
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc   1598502 Mar 15 14:00 log.48955010._035586.job.log.1
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc       357 Mar 15 14:00 output.list
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc       620 Mar 15 14:00 runtime_log
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc   2017280 Mar 15 14:00 result.tar.gz
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc      9205 Mar 15 14:00 runtime_log.err
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc       664 Mar 15 14:00 oNNNDmjGRL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmcZoLDmuL4Ofn.diag
[2026-03-15 14:00:20] -rw-r--r--. 1 boinc boinc     21192 Mar 15 14:00 stderr.txt
[2026-03-15 14:00:20] HITS file was successfully produced:
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc 188694245 Mar 15 13:58 shared/HITS.pool.root.1
[2026-03-15 14:00:20]  *** Contents of shared directory: ***
[2026-03-15 14:00:20] total 617352
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc 440830555 Mar 15 10:49 ATLAS.root_0
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc    597537 Mar 15 10:49 input.tar.gz
[2026-03-15 14:00:20] -rw-r--r--. 2 boinc boinc     15845 Mar 15 10:49 start_atlas.sh
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc 188694245 Mar 15 13:58 HITS.pool.root.1
[2026-03-15 14:00:20] -rw-------. 1 boinc boinc   2017280 Mar 15 14:00 result.tar.gz
14:00:21 (2859038): run_atlas exited; CPU time 42366.458821
14:00:21 (2859038): called boinc_finish(0)

</stderr_txt>
]]>

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