Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:37:13 (3798884): wrapper (7.7.26015): starting
11:37:13 (3798884): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 11:37:13] Arguments: --nthreads 3
[2026-03-15 11:37:13] Threads: 3
[2026-03-15 11:37:13] Checking for CVMFS
[2026-03-15 11:37:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 11:37:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 11:37:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 11:37:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 11:37:14] 2.9.2.0 64072 25491 89408 157310 1 50 29757477 36864000 0 130560 0 10021241 99.982 958317 10766 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 11:37:14] CVMFS is ok
[2026-03-15 11:37:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 11:37:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 11:37:14] Further information can be found at the LHC@home message board.
[2026-03-15 11:37:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 11:37:14] Checking for apptainer binary...
[2026-03-15 11:37:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 11:37:14] Running /usr/bin/apptainer --version
[2026-03-15 11:37:14] apptainer version 1.4.1-1.1
[2026-03-15 11:37:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 11:37:14] thA383
[2026-03-15 11:37:14] apptainer works
[2026-03-15 11:37:14] Set ATHENA_PROC_NUMBER=3
[2026-03-15 11:37:14] Set ATHENA_CORE_NUMBER=3
[2026-03-15 11:37:14] Starting ATLAS job with PandaID=7046600873
[2026-03-15 11:37:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 12:57:51]  *** The last 200 lines of the pilot log: ***
[2026-03-15 12:57:51] 2026-03-15 11:57:20,093 | INFO     | overall cleanup function is called
[2026-03-15 12:57:51] 2026-03-15 11:57:21,096 | INFO     | --- collectZombieJob: --- 10, [3807355]
[2026-03-15 12:57:51] 2026-03-15 11:57:21,096 | INFO     | zombie collector waiting for pid 3807355
[2026-03-15 12:57:51] 2026-03-15 11:57:21,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 12:57:51] 2026-03-15 11:57:21,097 | INFO     | collected zombie processes
[2026-03-15 12:57:51] 2026-03-15 11:57:21,097 | INFO     | will attempt to kill all subprocesses of pid=3807355
[2026-03-15 12:57:51] 2026-03-15 11:57:21,149 | INFO     | process IDs to be killed: [3807355] (in reverse order)
[2026-03-15 12:57:51] 2026-03-15 11:57:21,178 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 12:57:51] 2026-03-15 11:57:21,178 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 12:57:51] 2026-03-15 11:57:21,180 | INFO     | did not find any defunct processes belonging to 3807355
[2026-03-15 12:57:51] 2026-03-15 11:57:21,181 | INFO     | did not find any defunct processes belonging to 3807355
[2026-03-15 12:57:51] 2026-03-15 11:57:21,181 | INFO     | ready for new job
[2026-03-15 12:57:51] 2026-03-15 11:57:21,181 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | **************************************
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | **************************************
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | 
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | architecture information:
[2026-03-15 12:57:51] 2026-03-15 11:57:21,182 | INFO     | executing command: cat /etc/os-release
[2026-03-15 12:57:51] 2026-03-15 11:57:21,192 | INFO     | cat /etc/os-release:
[2026-03-15 12:57:51] NAME="CentOS Linux"
[2026-03-15 12:57:51] VERSION="7 (Core)"
[2026-03-15 12:57:51] ID="centos"
[2026-03-15 12:57:51] ID_LIKE="rhel fedora"
[2026-03-15 12:57:51] VERSION_ID="7"
[2026-03-15 12:57:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 12:57:51] ANSI_COLOR="0;31"
[2026-03-15 12:57:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 12:57:51] HOME_URL="https://www.centos.org/"
[2026-03-15 12:57:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 12:57:51] 
[2026-03-15 12:57:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 12:57:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 12:57:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 12:57:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 12:57:51] 
[2026-03-15 12:57:51] 2026-03-15 11:57:21,192 | INFO     | **************************************
[2026-03-15 12:57:51] 2026-03-15 11:57:21,687 | WARNING  | process 3807355 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 12:57:51] 2026-03-15 11:57:21,695 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | INFO     | sufficient remaining disk space (227965665280 B)
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | INFO     | update_server=False
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 12:57:51] 2026-03-15 11:57:21,707 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 12:57:51] 2026-03-15 11:57:21,731 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 12:57:51] 2026-03-15 11:57:21,779 | INFO     | number of running child processes to parent process 3807355: 1
[2026-03-15 12:57:51] 2026-03-15 11:57:21,779 | INFO     | maximum number of monitored processes: 6
[2026-03-15 12:57:51] 2026-03-15 11:57:21,779 | INFO     | aborting job monitoring since job object (job id=7046600873) has expired
[2026-03-15 12:57:51] 2026-03-15 11:57:21,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 12:57:51] 2026-03-15 11:57:21,779 | INFO     | will abort loop
[2026-03-15 12:57:51] 2026-03-15 11:57:22,350 | INFO     | all data control threads have been joined
[2026-03-15 12:57:51] 2026-03-15 11:57:22,655 | INFO     | all job control threads have been joined
[2026-03-15 12:57:51] 2026-03-15 11:57:22,712 | INFO     | [job] retrieve thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:22,713 | INFO     | [job] queue monitor thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:22,719 | INFO     | [data] copytool_in thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:22,785 | INFO     | [job] job monitor thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:22,850 | INFO     | [payload] validate_post thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:22,922 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 12:57:51] 2026-03-15 11:57:23,019 | INFO     | all payload control threads have been joined
[2026-03-15 12:57:51] 2026-03-15 11:57:23,356 | INFO     | [data] control thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:23,661 | INFO     | [job] control thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:23,713 | INFO     | [data] copytool_out thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:23,930 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:23,949 | INFO     | [payload] failed_post thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:24,025 | INFO     | [payload] control thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:24,085 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:24,091 | INFO     | [job] validate thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:24,167 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:26,928 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:30,381 | INFO     | [monitor] cgroup control has ended
[2026-03-15 12:57:51] 2026-03-15 11:57:31,949 | INFO     | job.realtimelogging is not enabled
[2026-03-15 12:57:51] 2026-03-15 11:57:32,955 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 12:57:51] 2026-03-15 11:57:33,630 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140329288820544)>', '<ExcThread(monitor, started 140329006413568)>']
[2026-03-15 12:57:51] 2026-03-15 11:57:38,654 | INFO     | all workflow threads have been joined
[2026-03-15 12:57:51] 2026-03-15 11:57:38,655 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 12:57:51] 2026-03-15 11:57:38,655 | INFO     | traces error code: 0
[2026-03-15 12:57:51] 2026-03-15 11:57:38,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 12:57:51] 2026-03-15 11:57:51,558 | INFO     | PID=3802924 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 12:57:51] 2026-03-15 11:57:51,558 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 12:57:51] 2026-03-15 11:57:51,558 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 12:57:51] 2026-03-15 11:57:51,559 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 12:57:51] 2026-03-15 11:57:51,559 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 12:57:51] 2026-03-15 11:57:51,559 | INFO     | [monitor] control thread has ended
[2026-03-15 12:57:51] 2026-03-15 11:57:51,606 [wrapper] ==== pilot stdout END ====
[2026-03-15 12:57:51] 2026-03-15 11:57:51,609 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 12:57:51] 2026-03-15 11:57:51,611 [wrapper] pilotpid: 3802924
[2026-03-15 12:57:51] 2026-03-15 11:57:51,614 [wrapper] Pilot exit status: 0
[2026-03-15 12:57:51] 2026-03-15 11:57:51,621 [wrapper] pandaids: 7046600873
[2026-03-15 12:57:51] 2026-03-15 11:57:51,639 [wrapper] cleanup supervisor_pilot 3813243 3802925
[2026-03-15 12:57:51] 2026-03-15 11:57:51,642 [wrapper] Test setup, not cleaning
[2026-03-15 12:57:51] 2026-03-15 11:57:51,644 [wrapper] apfmon messages muted
[2026-03-15 12:57:51] 2026-03-15 11:57:51,646 [wrapper] ==== wrapper stdout END ====
[2026-03-15 12:57:51] 2026-03-15 11:57:51,649 [wrapper] ==== wrapper stderr END ====
[2026-03-15 12:57:51]  *** Error codes and diagnostics ***
[2026-03-15 12:57:51]     "exeErrorCode": 0,
[2026-03-15 12:57:51]     "exeErrorDiag": "",
[2026-03-15 12:57:51]     "pilotErrorCode": 0,
[2026-03-15 12:57:51]     "pilotErrorDiag": "",
[2026-03-15 12:57:51]  *** Listing of results directory ***
[2026-03-15 12:57:51] total 619536
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:56 pilot3.tar.gz
[2026-03-15 12:57:51] -rwx------ 1 boinc boinc     36322 Mar 14 11:01 runpilot2-wrapper.sh
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc      5111 Mar 14 11:01 queuedata.json
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc       100 Mar 15 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 12:57:51] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 11:37 run_atlas
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc       105 Mar 15 11:37 job.xml
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc 443583462 Mar 15 11:37 EVNT.46701403._002556.pool.root.1
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc    597532 Mar 15 11:37 input.tar.gz
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:37 start_atlas.sh
[2026-03-15 12:57:51] drwxrwx--x 2 boinc boinc      4096 Mar 15 11:37 shared
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:37 boinc_setup_complete
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc      6438 Mar 15 11:37 init_data.xml
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc         0 Mar 15 11:37 boinc_lockfile
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc      2572 Mar 15 11:37 pandaJob.out
[2026-03-15 12:57:51] -rw------- 1 boinc boinc   1006481 Mar 15 11:37 agis_schedconf.cvmfs.json
[2026-03-15 12:57:51] -rw------- 1 boinc boinc   1511579 Mar 15 11:37 agis_ddmendpoints.agis.ALL.json
[2026-03-15 12:57:51] -rw------- 1 boinc boinc       427 Mar 15 11:37 workernode_map.json
[2026-03-15 12:57:51] drwx------ 5 boinc boinc      4096 Mar 15 11:37 pilot3
[2026-03-15 12:57:51] -rw------- 1 boinc boinc 184934424 Mar 15 12:56 HITS.48955015._024969.pool.root.1
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc       530 Mar 15 12:57 boinc_task_state.xml
[2026-03-15 12:57:51] -rw------- 1 boinc boinc      1015 Mar 15 12:57 memory_monitor_summary.json
[2026-03-15 12:57:51] -rw------- 1 boinc boinc    280058 Mar 15 12:57 log.48955015._024969.job.log.tgz.1
[2026-03-15 12:57:51] -rw------- 1 boinc boinc      6315 Mar 15 12:57 heartbeat.json
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc        27 Mar 15 12:57 wrapper_checkpoint.txt
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc      8192 Mar 15 12:57 boinc_mmap_file
[2026-03-15 12:57:51] -rw------- 1 boinc boinc       747 Mar 15 12:57 pilotlog.txt
[2026-03-15 12:57:51] -rw------- 1 boinc boinc        95 Mar 15 12:57 pilot_heartbeat.json
[2026-03-15 12:57:51] -rw------- 1 boinc boinc    704095 Mar 15 12:57 log.48955015._024969.job.log.1
[2026-03-15 12:57:51] -rw------- 1 boinc boinc       357 Mar 15 12:57 output.list
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc       620 Mar 15 12:57 runtime_log
[2026-03-15 12:57:51] -rw------- 1 boinc boinc   1003520 Mar 15 12:57 result.tar.gz
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc      8896 Mar 15 12:57 runtime_log.err
[2026-03-15 12:57:51] -rw------- 1 boinc boinc       657 Mar 15 12:57 oGHMDm4yaL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmHwsLDmvnpFqn.diag
[2026-03-15 12:57:51] -rw-r--r-- 1 boinc boinc     11433 Mar 15 12:57 stderr.txt
[2026-03-15 12:57:51] HITS file was successfully produced:
[2026-03-15 12:57:51] -rw------- 1 boinc boinc 184934424 Mar 15 12:56 shared/HITS.pool.root.1
[2026-03-15 12:57:51]  *** Contents of shared directory: ***
[2026-03-15 12:57:51] total 615376
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc 443583462 Mar 15 11:37 ATLAS.root_0
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc    597532 Mar 15 11:37 input.tar.gz
[2026-03-15 12:57:51] -rw-r--r-- 2 boinc boinc     15845 Mar 15 11:37 start_atlas.sh
[2026-03-15 12:57:51] -rw------- 1 boinc boinc 184934424 Mar 15 12:56 HITS.pool.root.1
[2026-03-15 12:57:51] -rw------- 1 boinc boinc   1003520 Mar 15 12:57 result.tar.gz
12:57:52 (3798884): run_atlas exited; CPU time 13383.837484
12:57:52 (3798884): called boinc_finish(0)

</stderr_txt>
]]>

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