Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:33:50 (19721): wrapper (7.7.26015): starting
11:33:50 (19721): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 11:33:50] Arguments: --nthreads 8
[2026-03-14 11:33:50] Threads: 8
[2026-03-14 11:33:50] Checking for CVMFS
[2026-03-14 11:33:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 11:33:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 11:33:51] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 11:33:51] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 11:33:51] 2.11.2.0 2925 73421 120580 157282 0 50 19030254 20275200 1 130560 0 14113697 99.979 1641906 4436 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://10.10.128.19:3128 1
[2026-03-14 11:33:51] CVMFS is ok
[2026-03-14 11:33:51] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 11:33:51] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 11:33:51] Further information can be found at the LHC@home message board.
[2026-03-14 11:33:51] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 11:33:51] Checking for apptainer binary...
[2026-03-14 11:33:51] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 11:33:51] Running /usr/bin/apptainer --version
[2026-03-14 11:33:51] apptainer version 1.3.2-1.el7
[2026-03-14 11:33:51] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 11:33:53] c-115-8.aglt2.org
[2026-03-14 11:33:53] apptainer works
[2026-03-14 11:33:53] Set ATHENA_PROC_NUMBER=8
[2026-03-14 11:33:53] Set ATHENA_CORE_NUMBER=8
[2026-03-14 11:33:53] Starting ATLAS job with PandaID=7046546919
[2026-03-14 11:33:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:48:46 (8123): wrapper (7.7.26015): starting
11:48:46 (8123): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 11:48:46] Arguments: --nthreads 8
[2026-03-14 11:48:46] Threads: 8
[2026-03-14 11:48:46] This job has been restarted, cleaning up previous attempt
[2026-03-14 11:48:46] Checking for CVMFS
[2026-03-14 11:48:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 11:48:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 11:48:46] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 11:48:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 11:48:46] 2.11.2.0 2925 73436 116208 157282 1 188 19062526 20275200 1 130560 0 14163839 99.979 1641908 4435 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://10.10.128.19:3128 1
[2026-03-14 11:48:46] CVMFS is ok
[2026-03-14 11:48:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 11:48:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 11:48:46] Further information can be found at the LHC@home message board.
[2026-03-14 11:48:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 11:48:46] Checking for apptainer binary...
[2026-03-14 11:48:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 11:48:46] Running /usr/bin/apptainer --version
[2026-03-14 11:48:46] apptainer version 1.3.2-1.el7
[2026-03-14 11:48:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 11:48:48] c-115-8.aglt2.org
[2026-03-14 11:48:48] apptainer works
[2026-03-14 11:48:48] Set ATHENA_PROC_NUMBER=8
[2026-03-14 11:48:48] Set ATHENA_CORE_NUMBER=8
[2026-03-14 11:48:48] Starting ATLAS job with PandaID=7046546919
[2026-03-14 11:48:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 13:33:32]  *** The last 200 lines of the pilot log: ***
[2026-03-14 13:33:32] 2026-03-14 17:32:57,969 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 13:33:32] 2026-03-14 17:32:59,002 | INFO     | time since job start (6235s) is within the limit (345600.0s)
[2026-03-14 13:33:32] 2026-03-14 17:32:59,863 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 13:33:32] 2026-03-14 17:33:00,316 | INFO     | job 7046546919 has state=finished
[2026-03-14 13:33:32] 2026-03-14 17:33:00,316 | INFO     | preparing for final server update for job 7046546919 in state='finished'
[2026-03-14 13:33:32] 2026-03-14 17:33:00,316 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7046546919/jobReport.json
[2026-03-14 13:33:32] 2026-03-14 17:33:00,320 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-14 13:33:32] 2026-03-14 17:33:00,321 | INFO     | this job has now completed (state=finished)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,321 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,321 | INFO     | log transfer has been attempted: DONE
[2026-03-14 13:33:32] 2026-03-14 17:33:00,321 | INFO     | job 7046546919 has finished - writing final server update
[2026-03-14 13:33:32] 2026-03-14 17:33:00,321 | INFO     | total number of processed events: 400 (read)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,323 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7046546919/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,323 | INFO     | extracted standard info from prmon json
[2026-03-14 13:33:32] 2026-03-14 17:33:00,324 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 13:33:32] 2026-03-14 17:33:00,324 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 13:33:32] 2026-03-14 17:33:00,324 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 13:33:32] 2026-03-14 17:33:00,324 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 13:33:32] 2026-03-14 17:33:00,326 | INFO     | fitting pss+swap vs Time
[2026-03-14 13:33:32] 2026-03-14 17:33:00,326 | INFO     | sum of square deviations: 329031285.5
[2026-03-14 13:33:32] 2026-03-14 17:33:00,327 | INFO     | sum of deviations: 2464563174.9999995
[2026-03-14 13:33:32] 2026-03-14 17:33:00,327 | INFO     | mean x: 1773506450.5
[2026-03-14 13:33:32] 2026-03-14 17:33:00,327 | INFO     | mean y: 2521368.6470588236
[2026-03-14 13:33:32] 2026-03-14 17:33:00,327 | INFO     | intersect: -13281682538.848112
[2026-03-14 13:33:32] 2026-03-14 17:33:00,328 | INFO     | chi2: 1.6722365465964844
[2026-03-14 13:33:32] 2026-03-14 17:33:00,328 | INFO     | sum of square deviations: 282974608.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,328 | INFO     | sum of deviations: 2594362512.999996
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | mean x: 1773506298.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | mean y: 2521800.9587628865
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | intersect: -16257305498.106176
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | chi2: 1.6752669480437832
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | current chi2=1.6752669480437832 (change=-0.1812184677739895 %)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | right removable region: 96
[2026-03-14 13:33:32] 2026-03-14 17:33:00,329 | INFO     | sum of square deviations: 282974608.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,330 | INFO     | sum of deviations: -13245862567.999998
[2026-03-14 13:33:32] 2026-03-14 17:33:00,330 | INFO     | mean x: 1773506603.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,330 | INFO     | mean y: 2572227.06185567
[2026-03-14 13:33:32] 2026-03-14 17:33:00,330 | INFO     | intersect: 83019295504.15015
[2026-03-14 13:33:32] 2026-03-14 17:33:00,330 | INFO     | chi2: 0.10947203466591378
[2026-03-14 13:33:32] 2026-03-14 17:33:00,331 | INFO     | current chi2=0.10947203466591378 (change=93.45355566539178 %)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,331 | INFO     | sum of square deviations: 241429643.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,331 | INFO     | sum of deviations: -11680779833.999996
[2026-03-14 13:33:32] 2026-03-14 17:33:00,331 | INFO     | mean x: 1773506755.5
[2026-03-14 13:33:32] 2026-03-14 17:33:00,331 | INFO     | mean y: 2566320.434782609
[2026-03-14 13:33:32] 2026-03-14 17:33:00,332 | INFO     | intersect: 85807862172.63948
[2026-03-14 13:33:32] 2026-03-14 17:33:00,332 | INFO     | chi2: 0.09783799248907298
[2026-03-14 13:33:32] 2026-03-14 17:33:00,332 | INFO     | current chi2=0.09783799248907298 (change=10.627410198728393 %)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,332 | INFO     | left removable region: 20
[2026-03-14 13:33:32] 2026-03-14 17:33:00,332 | INFO     | sum of square deviations: 136095575.0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | sum of deviations: -5055536894.000002
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | mean x: 1773506877.5
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | mean y: 2541323.6842105263
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | intersect: 65882930535.192314
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | chi2: 0.07257209094818522
[2026-03-14 13:33:32] 2026-03-14 17:33:00,333 | INFO     | current memory leak: -37.15 B/s (using 76 data points, chi2=0.07)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | could have reported an average CPU frequency of 1712 MHz (7 samples)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | ..............................
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | . Timing measurements:
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | . get job = 0 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | . initial setup = 1 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | . payload setup = 8 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,334 | INFO     | . stage-in = 0 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,335 | INFO     | . payload execution = 6207 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,335 | INFO     | . stage-out = 0 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,335 | INFO     | . log creation = 0 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,335 | INFO     | ..............................
[2026-03-14 13:33:32] 2026-03-14 17:33:00,713 | INFO     | 
[2026-03-14 13:33:32] 2026-03-14 17:33:00,713 | INFO     | job summary report
[2026-03-14 13:33:32] 2026-03-14 17:33:00,713 | INFO     | --------------------------------------------------
[2026-03-14 13:33:32] 2026-03-14 17:33:00,713 | INFO     | PanDA job id: 7046546919
[2026-03-14 13:33:32] 2026-03-14 17:33:00,713 | INFO     | task id: 48955010
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | errors: (none)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | pilot state: finished 
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | transexitcode: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | exeerrorcode: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,714 | INFO     | exeerrordiag: 
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | exitcode: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | exitmsg: OK
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | cpuconsumptiontime: 46146 s
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | nevents: 400
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | neventsw: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,715 | INFO     | pid: 14339
[2026-03-14 13:33:32] 2026-03-14 17:33:00,716 | INFO     | pgrp: 14339
[2026-03-14 13:33:32] 2026-03-14 17:33:00,716 | INFO     | corecount: 8
[2026-03-14 13:33:32] 2026-03-14 17:33:00,716 | INFO     | event service: False
[2026-03-14 13:33:32] 2026-03-14 17:33:00,716 | INFO     | sizes: {0: 2280180, 11: 2280180, 6220: 2307138, 6221: 2316136, 6224: 2316386}
[2026-03-14 13:33:32] 2026-03-14 17:33:00,716 | INFO     | --------------------------------------------------
[2026-03-14 13:33:32] 2026-03-14 17:33:00,717 | INFO     | 
[2026-03-14 13:33:32] 2026-03-14 17:33:00,717 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-14 13:33:32] 2026-03-14 17:33:00,744 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,746 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,747 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,748 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,748 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,748 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 13:33:32] 2026-03-14 17:33:00,748 | INFO     | job 7046546919 has completed (purged errors)
[2026-03-14 13:33:32] 2026-03-14 17:33:00,748 | INFO     | overall cleanup function is called
[2026-03-14 13:33:32] 2026-03-14 17:33:01,757 | INFO     | --- collectZombieJob: --- 10, [14339]
[2026-03-14 13:33:32] 2026-03-14 17:33:01,757 | INFO     | zombie collector waiting for pid 14339
[2026-03-14 13:33:32] 2026-03-14 17:33:01,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 13:33:32] 2026-03-14 17:33:01,757 | INFO     | collected zombie processes
[2026-03-14 13:33:32] 2026-03-14 17:33:01,758 | INFO     | will attempt to kill all subprocesses of pid=14339
[2026-03-14 13:33:32] 2026-03-14 17:33:01,838 | INFO     | process IDs to be killed: [14339] (in reverse order)
[2026-03-14 13:33:32] 2026-03-14 17:33:01,895 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 13:33:32] 2026-03-14 17:33:01,895 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 13:33:32] 2026-03-14 17:33:01,900 | INFO     | did not find any defunct processes belonging to 14339
[2026-03-14 13:33:32] 2026-03-14 17:33:01,903 | INFO     | did not find any defunct processes belonging to 14339
[2026-03-14 13:33:32] 2026-03-14 17:33:01,903 | INFO     | ready for new job
[2026-03-14 13:33:32] 2026-03-14 17:33:01,903 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 13:33:32] 2026-03-14 17:33:01,904 | INFO     | **************************************
[2026-03-14 13:33:32] 2026-03-14 17:33:01,905 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 13:33:32] 2026-03-14 17:33:01,905 | INFO     | **************************************
[2026-03-14 13:33:32] 2026-03-14 17:33:01,905 | INFO     | 
[2026-03-14 13:33:32] 2026-03-14 17:33:01,905 | INFO     | architecture information:
[2026-03-14 13:33:32] 2026-03-14 17:33:01,906 | INFO     | executing command: cat /etc/os-release
[2026-03-14 13:33:32] 2026-03-14 17:33:01,924 | INFO     | cat /etc/os-release:
[2026-03-14 13:33:32] NAME="CentOS Linux"
[2026-03-14 13:33:32] VERSION="7 (Core)"
[2026-03-14 13:33:32] ID="centos"
[2026-03-14 13:33:32] ID_LIKE="rhel fedora"
[2026-03-14 13:33:32] VERSION_ID="7"
[2026-03-14 13:33:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 13:33:32] ANSI_COLOR="0;31"
[2026-03-14 13:33:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 13:33:32] HOME_URL="https://www.centos.org/"
[2026-03-14 13:33:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 13:33:32] 
[2026-03-14 13:33:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 13:33:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 13:33:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 13:33:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 13:33:32] 
[2026-03-14 13:33:32] 2026-03-14 17:33:01,925 | INFO     | **************************************
[2026-03-14 13:33:32] 2026-03-14 17:33:02,428 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-14 13:33:32] 2026-03-14 17:33:02,448 | INFO     | sufficient remaining disk space (18124636160 B)
[2026-03-14 13:33:32] 2026-03-14 17:33:02,448 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 13:33:32] 2026-03-14 17:33:02,449 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 13:33:32] 2026-03-14 17:33:02,449 | INFO     | update_server=False
[2026-03-14 13:33:32] 2026-03-14 17:33:02,449 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 13:33:32] 2026-03-14 17:33:02,449 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 13:33:32] 2026-03-14 17:33:02,450 | INFO     | aborting loop
[2026-03-14 13:33:32] 2026-03-14 17:33:02,450 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 13:33:32] 2026-03-14 17:33:02,839 | INFO     | all data control threads have been joined
[2026-03-14 13:33:32] 2026-03-14 17:33:03,248 | INFO     | all payload control threads have been joined
[2026-03-14 13:33:32] 2026-03-14 17:33:03,451 | INFO     | [job] retrieve thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:03,455 | INFO     | [job] job monitor thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:03,519 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:03,541 | INFO     | all job control threads have been joined
[2026-03-14 13:33:32] 2026-03-14 17:33:03,567 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:03,811 | INFO     | [data] copytool_in thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:03,844 | INFO     | [data] control thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,143 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,240 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,253 | INFO     | [payload] control thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,456 | INFO     | [data] copytool_out thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,544 | INFO     | [job] control thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,718 | INFO     | [payload] validate_post thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,777 | INFO     | [job] validate thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:04,916 | INFO     | [payload] failed_post thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:05,419 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 13:33:32] 2026-03-14 17:33:05,951 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 13:33:32] 2026-03-14 17:33:06,425 | INFO     | [job] queue monitor thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:09,957 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 13:33:32] 2026-03-14 17:33:13,986 | INFO     | [monitor] cgroup control has ended
[2026-03-14 13:33:32] 2026-03-14 17:33:15,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140679915513664)>', '<ExcThread(monitor, started 140678893922048)>']
[2026-03-14 13:33:32] 2026-03-14 17:33:20,100 | INFO     | all workflow threads have been joined
[2026-03-14 13:33:32] 2026-03-14 17:33:20,100 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 13:33:32] 2026-03-14 17:33:20,101 | INFO     | traces error code: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:20,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 13:33:32] 2026-03-14 17:33:32,197 | INFO     | PID=11866 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 13:33:32] 2026-03-14 17:33:32,198 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 13:33:32] 2026-03-14 17:33:32,198 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 13:33:32] 2026-03-14 17:33:32,198 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 13:33:32] 2026-03-14 17:33:32,198 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 13:33:32] 2026-03-14 17:33:32,198 | INFO     | [monitor] control thread has ended
[2026-03-14 13:33:32] 2026-03-14 17:33:32,301 [wrapper] ==== pilot stdout END ====
[2026-03-14 13:33:32] 2026-03-14 17:33:32,306 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 13:33:32] 2026-03-14 17:33:32,310 [wrapper] pilotpid: 11866
[2026-03-14 13:33:32] 2026-03-14 17:33:32,315 [wrapper] Pilot exit status: 0
[2026-03-14 13:33:32] 2026-03-14 17:33:32,333 [wrapper] pandaids: 7046546919 7046546919
[2026-03-14 13:33:32] 2026-03-14 17:33:32,379 [wrapper] cleanup supervisor_pilot 18854 11867
[2026-03-14 13:33:32] 2026-03-14 17:33:32,383 [wrapper] Test setup, not cleaning
[2026-03-14 13:33:32] 2026-03-14 17:33:32,388 [wrapper] apfmon messages muted
[2026-03-14 13:33:32] 2026-03-14 17:33:32,393 [wrapper] ==== wrapper stdout END ====
[2026-03-14 13:33:32] 2026-03-14 17:33:32,397 [wrapper] ==== wrapper stderr END ====
[2026-03-14 13:33:32]  *** Error codes and diagnostics ***
[2026-03-14 13:33:32]     "exeErrorCode": 0,
[2026-03-14 13:33:32]     "exeErrorDiag": "",
[2026-03-14 13:33:32]     "pilotErrorCode": 0,
[2026-03-14 13:33:32]     "pilotErrorDiag": "",
[2026-03-14 13:33:32]  *** Listing of results directory ***
[2026-03-14 13:33:32] total 1048416
[2026-03-14 13:33:32] drwx------ 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas    585013 Mar 14 05:56 pilot3.tar.gz
[2026-03-14 13:33:32] -rwx------ 1 boincer umatlas     36322 Mar 14 06:00 runpilot2-wrapper.sh
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas      5111 Mar 14 06:01 queuedata.json
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas       100 Mar 14 11:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 13:33:32] -rwxr-xr-x 1 boincer umatlas      7986 Mar 14 11:33 run_atlas
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas       105 Mar 14 11:33 job.xml
[2026-03-14 13:33:32] -rw-r--r-- 3 boincer umatlas 442119676 Mar 14 11:33 EVNT.46701403._001855.pool.root.1
[2026-03-14 13:33:32] -rw-r--r-- 3 boincer umatlas 442119676 Mar 14 11:33 ATLAS.root_0
[2026-03-14 13:33:32] -rw-r--r-- 2 boincer umatlas     15845 Mar 14 11:33 start_atlas.sh
[2026-03-14 13:33:32] drwxrwx--x 2 boincer umatlas      4096 Mar 14 11:33 shared
[2026-03-14 13:33:32] -rw-r--r-- 2 boincer umatlas    597525 Mar 14 11:33 input.tar.gz
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas         0 Mar 14 11:33 boinc_lockfile
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas   1511579 Mar 14 11:34 agis_ddmendpoints.agis.ALL.json
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas      2564 Mar 14 11:48 pandaJob.out
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas        57 Mar 14 11:48 setup.sh.local
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas   1004579 Mar 14 11:49 agis_schedconf.cvmfs.json
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas       430 Mar 14 11:49 workernode_map.json
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas      5908 Mar 14 13:27 init_data.xml
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas       530 Mar 14 13:32 boinc_task_state.xml
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas 182921946 Mar 14 13:32 HITS.48955010._041751.pool.root.1
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas      1046 Mar 14 13:32 memory_monitor_summary.json
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas    348027 Mar 14 13:32 log.48955010._041751.job.log.tgz.1
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas      6402 Mar 14 13:33 heartbeat.json
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas      8192 Mar 14 13:33 boinc_mmap_file
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas        27 Mar 14 13:33 wrapper_checkpoint.txt
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas        96 Mar 14 13:33 pilot_heartbeat.json
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas       745 Mar 14 13:33 pilotlog.txt
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas    889121 Mar 14 13:33 log.48955010._041751.job.log.1
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas       357 Mar 14 13:33 output.list
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas       620 Mar 14 13:33 runtime_log
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas   1259520 Mar 14 13:33 result.tar.gz
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas      9421 Mar 14 13:33 runtime_log.err
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas       782 Mar 14 13:33 QqyLDm7xaL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmx9pLDmj9BPJn.diag
[2026-03-14 13:33:32] -rw-r--r-- 1 boincer umatlas     23408 Mar 14 13:33 stderr.txt
[2026-03-14 13:33:32] HITS file was successfully produced:
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas 182921946 Mar 14 13:32 shared/HITS.pool.root.1
[2026-03-14 13:33:32]  *** Contents of shared directory: ***
[2026-03-14 13:33:32] total 612232
[2026-03-14 13:33:32] -rw-r--r-- 3 boincer umatlas 442119676 Mar 14 11:33 ATLAS.root_0
[2026-03-14 13:33:32] -rw-r--r-- 2 boincer umatlas     15845 Mar 14 11:33 start_atlas.sh
[2026-03-14 13:33:32] -rw-r--r-- 2 boincer umatlas    597525 Mar 14 11:33 input.tar.gz
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas 182921946 Mar 14 13:32 HITS.pool.root.1
[2026-03-14 13:33:32] -rw------- 1 boincer umatlas   1259520 Mar 14 13:33 result.tar.gz
13:33:33 (8123): run_atlas exited; CPU time 46123.427276
13:33:33 (8123): called boinc_finish(0)

</stderr_txt>
]]>

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