Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:16:13 (1780436): wrapper (7.7.26015): starting
00:16:13 (1780436): wrapper: running run_atlas (--nthreads 2)
[2026-03-15 00:16:13] Arguments: --nthreads 2
[2026-03-15 00:16:13] Threads: 2
[2026-03-15 00:16:13] Checking for CVMFS
[2026-03-15 00:16:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 00:16:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 00:16:13] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 00:16:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 00:16:13] 2.9.2.0 12722 18040 63148 157294 1 49 32546168 36864001 0 130560 0 5185681 99.977 668103 6095 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 00:16:13] CVMFS is ok
[2026-03-15 00:16:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 00:16:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 00:16:13] Further information can be found at the LHC@home message board.
[2026-03-15 00:16:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 00:16:13] Checking for apptainer binary...
[2026-03-15 00:16:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 00:16:13] Running /usr/bin/apptainer --version
[2026-03-15 00:16:14] apptainer version 1.4.1-1.1
[2026-03-15 00:16:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 00:16:14] thA334a
[2026-03-15 00:16:14] apptainer works
[2026-03-15 00:16:14] Set ATHENA_PROC_NUMBER=2
[2026-03-15 00:16:14] Set ATHENA_CORE_NUMBER=2
[2026-03-15 00:16:14] Starting ATLAS job with PandaID=7046561321
[2026-03-15 00:16:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 02:11:45]  *** The last 200 lines of the pilot log: ***
[2026-03-15 02:11:45] 2026-03-15 01:11:14,263 | INFO     | did not find any defunct processes belonging to 1788876
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | ready for new job
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | **************************************
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | **************************************
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | 
[2026-03-15 02:11:45] 2026-03-15 01:11:14,264 | INFO     | architecture information:
[2026-03-15 02:11:45] 2026-03-15 01:11:14,265 | INFO     | executing command: cat /etc/os-release
[2026-03-15 02:11:45] 2026-03-15 01:11:14,273 | INFO     | cat /etc/os-release:
[2026-03-15 02:11:45] NAME="CentOS Linux"
[2026-03-15 02:11:45] VERSION="7 (Core)"
[2026-03-15 02:11:45] ID="centos"
[2026-03-15 02:11:45] ID_LIKE="rhel fedora"
[2026-03-15 02:11:45] VERSION_ID="7"
[2026-03-15 02:11:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 02:11:45] ANSI_COLOR="0;31"
[2026-03-15 02:11:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 02:11:45] HOME_URL="https://www.centos.org/"
[2026-03-15 02:11:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 02:11:45] 
[2026-03-15 02:11:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 02:11:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 02:11:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 02:11:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 02:11:45] 
[2026-03-15 02:11:45] 2026-03-15 01:11:14,273 | INFO     | **************************************
[2026-03-15 02:11:45] 2026-03-15 01:11:14,776 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | INFO     | sufficient remaining disk space (490048847872 B)
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | INFO     | update_server=False
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 02:11:45] 2026-03-15 01:11:14,789 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 02:11:45] 2026-03-15 01:11:15,070 | INFO     | all data control threads have been joined
[2026-03-15 02:11:45] 2026-03-15 01:11:15,323 | WARNING  | process 1788876 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 02:11:45] 2026-03-15 01:11:15,343 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 02:11:45] 2026-03-15 01:11:15,370 | INFO     | number of running child processes to parent process 1788876: 1
[2026-03-15 02:11:45] 2026-03-15 01:11:15,370 | INFO     | maximum number of monitored processes: 6
[2026-03-15 02:11:45] 2026-03-15 01:11:15,370 | INFO     | aborting job monitoring since job object (job id=7046561321) has expired
[2026-03-15 02:11:45] 2026-03-15 01:11:15,370 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 02:11:45] 2026-03-15 01:11:15,370 | INFO     | will abort loop
[2026-03-15 02:11:45] 2026-03-15 01:11:15,795 | INFO     | [job] retrieve thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:15,796 | INFO     | [job] queue monitor thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:15,896 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:15,987 | INFO     | all job control threads have been joined
[2026-03-15 02:11:45] 2026-03-15 01:11:16,077 | INFO     | [data] control thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,106 | INFO     | [payload] validate_post thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,107 | INFO     | all payload control threads have been joined
[2026-03-15 02:11:45] 2026-03-15 01:11:16,152 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 02:11:45] 2026-03-15 01:11:16,376 | INFO     | [job] job monitor thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,816 | INFO     | [job] validate thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,860 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,887 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:16,993 | INFO     | [job] control thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:17,113 | INFO     | [payload] control thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:17,126 | INFO     | [payload] failed_post thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:17,138 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:17,175 | INFO     | [data] copytool_in thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:18,104 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 02:11:45] 2026-03-15 01:11:18,158 | INFO     | [data] copytool_out thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:22,111 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 02:11:45] 2026-03-15 01:11:39,360 | INFO     | [monitor] cgroup control has ended
[2026-03-15 02:11:45] 2026-03-15 01:11:40,722 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140406945412928)>', '<ExcThread(monitor, started 140406222214912)>']
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | INFO     | PID=1784468 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 02:11:45] 2026-03-15 01:11:45,371 | INFO     | [monitor] control thread has ended
[2026-03-15 02:11:45] 2026-03-15 01:11:45,748 | INFO     | all workflow threads have been joined
[2026-03-15 02:11:45] 2026-03-15 01:11:45,749 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 02:11:45] 2026-03-15 01:11:45,749 | INFO     | traces error code: 0
[2026-03-15 02:11:45] 2026-03-15 01:11:45,749 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 02:11:45] 2026-03-15 01:11:45,815 [wrapper] ==== pilot stdout END ====
[2026-03-15 02:11:45] 2026-03-15 01:11:45,818 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 02:11:45] 2026-03-15 01:11:45,820 [wrapper] pilotpid: 1784468
[2026-03-15 02:11:45] 2026-03-15 01:11:45,822 [wrapper] Pilot exit status: 0
[2026-03-15 02:11:45] 2026-03-15 01:11:45,828 [wrapper] pandaids: 7046561321
[2026-03-15 02:11:45] 2026-03-15 01:11:45,840 [wrapper] cleanup supervisor_pilot 1794891 1784469
[2026-03-15 02:11:45] 2026-03-15 01:11:45,843 [wrapper] Test setup, not cleaning
[2026-03-15 02:11:45] 2026-03-15 01:11:45,845 [wrapper] apfmon messages muted
[2026-03-15 02:11:45] 2026-03-15 01:11:45,847 [wrapper] ==== wrapper stdout END ====
[2026-03-15 02:11:45] 2026-03-15 01:11:45,849 [wrapper] ==== wrapper stderr END ====
[2026-03-15 02:11:45]  *** Error codes and diagnostics ***
[2026-03-15 02:11:45]     "exeErrorCode": 0,
[2026-03-15 02:11:45]     "exeErrorDiag": "",
[2026-03-15 02:11:45]     "pilotErrorCode": 0,
[2026-03-15 02:11:45]     "pilotErrorDiag": "",
[2026-03-15 02:11:45]  *** Listing of results directory ***
[2026-03-15 02:11:45] total 608972
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:56 pilot3.tar.gz
[2026-03-15 02:11:45] -rwx------ 1 boinc boinc     36322 Mar 14 10:58 runpilot2-wrapper.sh
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc      5111 Mar 14 11:01 queuedata.json
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc       100 Mar 15 00:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 02:11:45] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 00:16 run_atlas
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc       105 Mar 15 00:16 job.xml
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc 436511091 Mar 15 00:16 EVNT.46701403._001861.pool.root.1
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc    597533 Mar 15 00:16 input.tar.gz
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:16 start_atlas.sh
[2026-03-15 02:11:45] drwxrwx--x 2 boinc boinc      4096 Mar 15 00:16 shared
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:16 boinc_setup_complete
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc      6206 Mar 15 00:16 init_data.xml
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:16 boinc_lockfile
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc      2565 Mar 15 00:16 pandaJob.out
[2026-03-15 02:11:45] -rw------- 1 boinc boinc   1006481 Mar 15 00:16 agis_schedconf.cvmfs.json
[2026-03-15 02:11:45] -rw------- 1 boinc boinc   1511579 Mar 15 00:16 agis_ddmendpoints.agis.ALL.json
[2026-03-15 02:11:45] -rw------- 1 boinc boinc       420 Mar 15 00:16 workernode_map.json
[2026-03-15 02:11:45] drwx------ 5 boinc boinc      4096 Mar 15 00:16 pilot3
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc       530 Mar 15 02:10 boinc_task_state.xml
[2026-03-15 02:11:45] -rw------- 1 boinc boinc 180578372 Mar 15 02:10 HITS.48955010._042026.pool.root.1
[2026-03-15 02:11:45] -rw------- 1 boinc boinc        95 Mar 15 02:10 pilot_heartbeat.json
[2026-03-15 02:11:45] -rw------- 1 boinc boinc      1015 Mar 15 02:11 memory_monitor_summary.json
[2026-03-15 02:11:45] -rw------- 1 boinc boinc    292248 Mar 15 02:11 log.48955010._042026.job.log.tgz.1
[2026-03-15 02:11:45] -rw------- 1 boinc boinc      6304 Mar 15 02:11 heartbeat.json
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc      8192 Mar 15 02:11 boinc_mmap_file
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc        27 Mar 15 02:11 wrapper_checkpoint.txt
[2026-03-15 02:11:45] -rw------- 1 boinc boinc      5272 Mar 15 02:11 pilotlog.txt
[2026-03-15 02:11:45] -rw------- 1 boinc boinc    991595 Mar 15 02:11 log.48955010._042026.job.log.1
[2026-03-15 02:11:45] -rw------- 1 boinc boinc       357 Mar 15 02:11 output.list
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc       620 Mar 15 02:11 runtime_log
[2026-03-15 02:11:45] -rw------- 1 boinc boinc   1300480 Mar 15 02:11 result.tar.gz
[2026-03-15 02:11:45] -rw------- 1 boinc boinc       658 Mar 15 02:11 xJTLDmAwaL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmv1pLDmQSDTYm.diag
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc      8901 Mar 15 02:11 runtime_log.err
[2026-03-15 02:11:45] -rw-r--r-- 1 boinc boinc     10271 Mar 15 02:11 stderr.txt
[2026-03-15 02:11:45] HITS file was successfully produced:
[2026-03-15 02:11:45] -rw------- 1 boinc boinc 180578372 Mar 15 02:10 shared/HITS.pool.root.1
[2026-03-15 02:11:45]  *** Contents of shared directory: ***
[2026-03-15 02:11:45] total 604512
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc 436511091 Mar 15 00:16 ATLAS.root_0
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc    597533 Mar 15 00:16 input.tar.gz
[2026-03-15 02:11:45] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:16 start_atlas.sh
[2026-03-15 02:11:45] -rw------- 1 boinc boinc 180578372 Mar 15 02:10 HITS.pool.root.1
[2026-03-15 02:11:45] -rw------- 1 boinc boinc   1300480 Mar 15 02:11 result.tar.gz
02:11:47 (1780436): run_atlas exited; CPU time 13201.221840
02:11:47 (1780436): called boinc_finish(0)

</stderr_txt>
]]>

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