Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:58:49 (970674): wrapper (7.7.26015): starting
00:58:49 (970674): wrapper: running run_atlas (--nthreads 3)
[2026-03-15 00:58:49] Arguments: --nthreads 3
[2026-03-15 00:58:49] Threads: 3
[2026-03-15 00:58:49] Checking for CVMFS
[2026-03-15 00:58:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 00:58:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 00:58:50] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 00:58:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 00:58:50] 2.9.2.0 5444 6144 82932 157295 1 50 32848608 36864001 0 130560 0 2719283 99.984 234008 15341 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-15 00:58:50] CVMFS is ok
[2026-03-15 00:58:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 00:58:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 00:58:50] Further information can be found at the LHC@home message board.
[2026-03-15 00:58:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 00:58:50] Checking for apptainer binary...
[2026-03-15 00:58:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 00:58:50] Running /usr/bin/apptainer --version
[2026-03-15 00:58:50] apptainer version 1.4.1-1.1
[2026-03-15 00:58:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 00:58:50] magicA161a
[2026-03-15 00:58:50] apptainer works
[2026-03-15 00:58:50] Set ATHENA_PROC_NUMBER=3
[2026-03-15 00:58:50] Set ATHENA_CORE_NUMBER=3
[2026-03-15 00:58:50] Starting ATLAS job with PandaID=7046469452
[2026-03-15 00:58:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 02:17:11]  *** The last 200 lines of the pilot log: ***
[2026-03-15 02:17:11] 2026-03-15 01:16:23,289 | INFO     | [data] control thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:23,390 | WARNING  | process 979141 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7046469452/payload.stdout) since it has not been created yet
[2026-03-15 02:17:11] 2026-03-15 01:16:23,419 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-15 02:17:11] 2026-03-15 01:16:23,429 | INFO     | sufficient remaining disk space (369973264384 B)
[2026-03-15 02:17:11] 2026-03-15 01:16:23,430 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-03-15 02:17:11] 2026-03-15 01:16:23,430 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7046469452/HITS.48955010._040737.pool.root.1 since it does not exist
[2026-03-15 02:17:11] 2026-03-15 01:16:23,467 | INFO     | number of running child processes to parent process 979141: 1
[2026-03-15 02:17:11] 2026-03-15 01:16:23,467 | INFO     | maximum number of monitored processes: 6
[2026-03-15 02:17:11] 2026-03-15 01:16:23,467 | INFO     | aborting job monitoring since job object (job id=7046469452) has expired
[2026-03-15 02:17:11] 2026-03-15 01:16:23,467 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 02:17:11] 2026-03-15 01:16:23,468 | INFO     | will abort loop
[2026-03-15 02:17:11] 2026-03-15 01:16:23,548 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:23,894 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:23,894 | INFO     | [job] validate thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:23,904 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:23,982 | INFO     | [payload] validate_post thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:24,036 | INFO     | [payload] control thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:24,124 | INFO     | [data] copytool_in thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:24,358 | INFO     | [data] copytool_out thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:24,473 | INFO     | [job] job monitor thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:25,647 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:32,029 | INFO     | job.realtimelogging is not enabled
[2026-03-15 02:17:11] 2026-03-15 01:16:33,034 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 02:17:11] 2026-03-15 01:16:51,671 | INFO     | PID=974716 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 02:17:11] 2026-03-15 01:16:51,671 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 02:17:11] 2026-03-15 01:16:51,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 02:17:11] 2026-03-15 01:16:51,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 02:17:11] 2026-03-15 01:17:04,805 | INFO     | [monitor] cgroup control has ended
[2026-03-15 02:17:11] 2026-03-15 01:17:06,538 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140611578861376)>', '<ExcThread(monitor, started 140611223009024)>']
[2026-03-15 02:17:11] 2026-03-15 01:17:06,746 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 02:17:11] 2026-03-15 01:17:06,746 | INFO     | [monitor] control thread has ended
[2026-03-15 02:17:11] 2026-03-15 01:17:11,564 | INFO     | all workflow threads have been joined
[2026-03-15 02:17:11] 2026-03-15 01:17:11,564 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 02:17:11] 2026-03-15 01:17:11,564 | INFO     | traces error code: 0
[2026-03-15 02:17:11] 2026-03-15 01:17:11,564 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 02:17:11] 2026-03-15 01:17:11,615 [wrapper] ==== pilot stdout END ====
[2026-03-15 02:17:11] 2026-03-15 01:17:11,617 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 02:17:11] 2026-03-15 01:17:11,620 [wrapper] pilotpid: 974716
[2026-03-15 02:17:11] 2026-03-15 01:17:11,622 [wrapper] Pilot exit status: 0
[2026-03-15 02:17:11] 2026-03-15 01:17:11,629 [wrapper] pandaids: 7046469452
[2026-03-15 02:17:11] 2026-03-15 01:17:11,646 [wrapper] cleanup supervisor_pilot  984546 974717
[2026-03-15 02:17:11] 2026-03-15 01:17:11,648 [wrapper] Test setup, not cleaning
[2026-03-15 02:17:11] 2026-03-15 01:17:11,650 [wrapper] apfmon messages muted
[2026-03-15 02:17:11] 2026-03-15 01:17:11,653 [wrapper] ==== wrapper stdout END ====
[2026-03-15 02:17:11] 2026-03-15 01:17:11,655 [wrapper] ==== wrapper stderr END ====
[2026-03-15 02:17:11]  *** Error codes and diagnostics ***
[2026-03-15 02:17:11]     "exeErrorCode": 0,
[2026-03-15 02:17:11]     "exeErrorDiag": "",
[2026-03-15 02:17:11]     "pilotErrorCode": 0,
[2026-03-15 02:17:11]     "pilotErrorDiag": "",
[2026-03-15 02:17:11]  *** Listing of results directory ***
[2026-03-15 02:17:11] total 614600
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc    585013 Mar 14 10:39 pilot3.tar.gz
[2026-03-15 02:17:11] -rwx------ 1 boinc boinc     36322 Mar 14 10:43 runpilot2-wrapper.sh
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      5111 Mar 14 10:47 queuedata.json
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc       100 Mar 15 00:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 02:17:11] -rwxr-xr-x 1 boinc boinc      7986 Mar 15 00:58 run_atlas
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc       105 Mar 15 00:58 job.xml
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc 437473978 Mar 15 00:58 EVNT.46701403._001835.pool.root.1
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc    597535 Mar 15 00:58 input.tar.gz
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:58 start_atlas.sh
[2026-03-15 02:17:11] drwxrwx--x 2 boinc boinc      4096 Mar 15 00:58 shared
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:58 boinc_setup_complete
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      6449 Mar 15 00:58 init_data.xml
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc         0 Mar 15 00:58 boinc_lockfile
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      2564 Mar 15 00:58 pandaJob.out
[2026-03-15 02:17:11] -rw------- 1 boinc boinc   1006481 Mar 15 00:58 agis_schedconf.cvmfs.json
[2026-03-15 02:17:11] -rw------- 1 boinc boinc   1511579 Mar 15 00:58 agis_ddmendpoints.agis.ALL.json
[2026-03-15 02:17:11] -rw------- 1 boinc boinc       427 Mar 15 00:58 workernode_map.json
[2026-03-15 02:17:11] drwx------ 5 boinc boinc      4096 Mar 15 00:58 pilot3
[2026-03-15 02:17:11] -rw------- 1 boinc boinc 186069242 Mar 15 02:15 HITS.48955010._040737.pool.root.1
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc       530 Mar 15 02:16 boinc_task_state.xml
[2026-03-15 02:17:11] -rw------- 1 boinc boinc      1015 Mar 15 02:16 memory_monitor_summary.json
[2026-03-15 02:17:11] -rw------- 1 boinc boinc    256252 Mar 15 02:16 log.48955010._040737.job.log.tgz.1
[2026-03-15 02:17:11] -rw------- 1 boinc boinc        95 Mar 15 02:16 pilot_heartbeat.json
[2026-03-15 02:17:11] -rw------- 1 boinc boinc      6312 Mar 15 02:16 heartbeat.json
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc        27 Mar 15 02:17 wrapper_checkpoint.txt
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      8192 Mar 15 02:17 boinc_mmap_file
[2026-03-15 02:17:11] -rw------- 1 boinc boinc      6318 Mar 15 02:17 pilotlog.txt
[2026-03-15 02:17:11] -rw------- 1 boinc boinc    683843 Mar 15 02:17 log.48955010._040737.job.log.1
[2026-03-15 02:17:11] -rw------- 1 boinc boinc       357 Mar 15 02:17 output.list
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc       620 Mar 15 02:17 runtime_log
[2026-03-15 02:17:11] -rw------- 1 boinc boinc    962560 Mar 15 02:17 result.tar.gz
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      8916 Mar 15 02:17 runtime_log.err
[2026-03-15 02:17:11] -rw------- 1 boinc boinc       661 Mar 15 02:17 fQTLDmwhaL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmQvpLDmZkAEnm.diag
[2026-03-15 02:17:11] -rw-r--r-- 1 boinc boinc      7989 Mar 15 02:17 stderr.txt
[2026-03-15 02:17:11] HITS file was successfully produced:
[2026-03-15 02:17:11] -rw------- 1 boinc boinc 186069242 Mar 15 02:15 shared/HITS.pool.root.1
[2026-03-15 02:17:11]  *** Contents of shared directory: ***
[2026-03-15 02:17:11] total 610484
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc 437473978 Mar 15 00:58 ATLAS.root_0
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc    597535 Mar 15 00:58 input.tar.gz
[2026-03-15 02:17:11] -rw-r--r-- 2 boinc boinc     15845 Mar 15 00:58 start_atlas.sh
[2026-03-15 02:17:11] -rw------- 1 boinc boinc 186069242 Mar 15 02:15 HITS.pool.root.1
[2026-03-15 02:17:11] -rw------- 1 boinc boinc    962560 Mar 15 02:17 result.tar.gz
02:17:13 (970674): run_atlas exited; CPU time 12987.407563
02:17:13 (970674): called boinc_finish(0)

</stderr_txt>
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