Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:34:13 (551201): wrapper (7.7.26015): starting
19:34:13 (551201): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 19:34:13] Arguments: --nthreads 4
[2026-03-14 19:34:13] Threads: 4
[2026-03-14 19:34:13] Checking for CVMFS
[2026-03-14 19:34:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 19:34:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 19:34:14] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 19:34:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 19:34:14] 2.9.2.0 49711 24768 106476 157286 2 50 27161023 36864001 0 130560 0 13019271 99.986 932287 13121 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 19:34:14] CVMFS is ok
[2026-03-14 19:34:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 19:34:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 19:34:14] Further information can be found at the LHC@home message board.
[2026-03-14 19:34:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 19:34:14] Checking for apptainer binary...
[2026-03-14 19:34:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 19:34:14] Running /usr/bin/apptainer --version
[2026-03-14 19:34:14] apptainer version 1.4.1-1.1
[2026-03-14 19:34:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 19:34:14] thA317a
[2026-03-14 19:34:14] apptainer works
[2026-03-14 19:34:14] Set ATHENA_PROC_NUMBER=4
[2026-03-14 19:34:14] Set ATHENA_CORE_NUMBER=4
[2026-03-14 19:34:14] Starting ATLAS job with PandaID=7045326800
[2026-03-14 19:34:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 20:35:39]  *** The last 200 lines of the pilot log: ***
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | job 7045326800 has completed (purged errors)
[2026-03-14 20:35:39] 2026-03-14 19:35:08,040 | INFO     | overall cleanup function is called
[2026-03-14 20:35:39] 2026-03-14 19:35:09,047 | INFO     | --- collectZombieJob: --- 10, [559856]
[2026-03-14 20:35:39] 2026-03-14 19:35:09,047 | INFO     | zombie collector waiting for pid 559856
[2026-03-14 20:35:39] 2026-03-14 19:35:09,047 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 20:35:39] 2026-03-14 19:35:09,047 | INFO     | collected zombie processes
[2026-03-14 20:35:39] 2026-03-14 19:35:09,047 | INFO     | will attempt to kill all subprocesses of pid=559856
[2026-03-14 20:35:39] 2026-03-14 19:35:09,107 | INFO     | process IDs to be killed: [559856] (in reverse order)
[2026-03-14 20:35:39] 2026-03-14 19:35:09,140 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 20:35:39] 2026-03-14 19:35:09,140 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 20:35:39] 2026-03-14 19:35:09,143 | INFO     | did not find any defunct processes belonging to 559856
[2026-03-14 20:35:39] 2026-03-14 19:35:09,144 | INFO     | did not find any defunct processes belonging to 559856
[2026-03-14 20:35:39] 2026-03-14 19:35:09,144 | INFO     | ready for new job
[2026-03-14 20:35:39] 2026-03-14 19:35:09,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 20:35:39] 2026-03-14 19:35:09,145 | INFO     | **************************************
[2026-03-14 20:35:39] 2026-03-14 19:35:09,145 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 20:35:39] 2026-03-14 19:35:09,145 | INFO     | **************************************
[2026-03-14 20:35:39] 2026-03-14 19:35:09,145 | INFO     | 
[2026-03-14 20:35:39] 2026-03-14 19:35:09,146 | INFO     | architecture information:
[2026-03-14 20:35:39] 2026-03-14 19:35:09,146 | INFO     | executing command: cat /etc/os-release
[2026-03-14 20:35:39] 2026-03-14 19:35:09,156 | INFO     | cat /etc/os-release:
[2026-03-14 20:35:39] NAME="CentOS Linux"
[2026-03-14 20:35:39] VERSION="7 (Core)"
[2026-03-14 20:35:39] ID="centos"
[2026-03-14 20:35:39] ID_LIKE="rhel fedora"
[2026-03-14 20:35:39] VERSION_ID="7"
[2026-03-14 20:35:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 20:35:39] ANSI_COLOR="0;31"
[2026-03-14 20:35:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 20:35:39] HOME_URL="https://www.centos.org/"
[2026-03-14 20:35:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 20:35:39] 
[2026-03-14 20:35:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 20:35:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 20:35:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 20:35:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 20:35:39] 
[2026-03-14 20:35:39] 2026-03-14 19:35:09,156 | INFO     | **************************************
[2026-03-14 20:35:39] 2026-03-14 19:35:09,659 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 20:35:39] 2026-03-14 19:35:09,672 | INFO     | sufficient remaining disk space (229081350144 B)
[2026-03-14 20:35:39] 2026-03-14 19:35:09,673 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 20:35:39] 2026-03-14 19:35:09,673 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 20:35:39] 2026-03-14 19:35:09,673 | INFO     | update_server=False
[2026-03-14 20:35:39] 2026-03-14 19:35:09,673 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 20:35:39] 2026-03-14 19:35:09,673 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:35:39] 2026-03-14 19:35:10,204 | WARNING  | process 559856 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 20:35:39] 2026-03-14 19:35:10,246 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 20:35:39] 2026-03-14 19:35:10,300 | INFO     | number of running child processes to parent process 559856: 1
[2026-03-14 20:35:39] 2026-03-14 19:35:10,300 | INFO     | maximum number of monitored processes: 6
[2026-03-14 20:35:39] 2026-03-14 19:35:10,300 | INFO     | aborting job monitoring since job object (job id=7045326800) has expired
[2026-03-14 20:35:39] 2026-03-14 19:35:10,300 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 20:35:39] 2026-03-14 19:35:10,300 | INFO     | will abort loop
[2026-03-14 20:35:39] 2026-03-14 19:35:10,470 | INFO     | all payload control threads have been joined
[2026-03-14 20:35:39] 2026-03-14 19:35:10,644 | INFO     | all data control threads have been joined
[2026-03-14 20:35:39] 2026-03-14 19:35:10,678 | INFO     | [job] retrieve thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:10,678 | INFO     | [job] queue monitor thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:10,768 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:10,776 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 20:35:39] 2026-03-14 19:35:10,842 | INFO     | all job control threads have been joined
[2026-03-14 20:35:39] 2026-03-14 19:35:11,085 | INFO     | [payload] failed_post thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,306 | INFO     | [job] job monitor thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,409 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 20:35:39] 2026-03-14 19:35:11,437 | INFO     | [job] validate thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,475 | INFO     | [payload] control thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,542 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,619 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,650 | INFO     | [data] control thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,679 | INFO     | [payload] validate_post thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,712 | INFO     | [data] copytool_in thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,772 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:11,848 | INFO     | [job] control thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:12,781 | INFO     | [data] copytool_out thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:15,416 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 20:35:39] 2026-03-14 19:35:28,955 | INFO     | [monitor] cgroup control has ended
[2026-03-14 20:35:39] 2026-03-14 19:35:31,064 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420757673792)>', '<ExcThread(monitor, started 140419987924736)>']
[2026-03-14 20:35:39] 2026-03-14 19:35:36,080 | INFO     | all workflow threads have been joined
[2026-03-14 20:35:39] 2026-03-14 19:35:36,080 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 20:35:39] 2026-03-14 19:35:36,080 | INFO     | traces error code: 0
[2026-03-14 20:35:39] 2026-03-14 19:35:36,080 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | INFO     | PID=555326 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 20:35:39] 2026-03-14 19:35:39,193 | INFO     | [monitor] control thread has ended
[2026-03-14 20:35:39] 2026-03-14 19:35:39,240 [wrapper] ==== pilot stdout END ====
[2026-03-14 20:35:39] 2026-03-14 19:35:39,244 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 20:35:39] 2026-03-14 19:35:39,247 [wrapper] pilotpid: 555326
[2026-03-14 20:35:39] 2026-03-14 19:35:39,250 [wrapper] Pilot exit status: 0
[2026-03-14 20:35:39] 2026-03-14 19:35:39,258 [wrapper] pandaids: 7045326800
[2026-03-14 20:35:39] 2026-03-14 19:35:39,279 [wrapper] cleanup supervisor_pilot  565208 555327
[2026-03-14 20:35:39] 2026-03-14 19:35:39,282 [wrapper] Test setup, not cleaning
[2026-03-14 20:35:39] 2026-03-14 19:35:39,284 [wrapper] apfmon messages muted
[2026-03-14 20:35:39] 2026-03-14 19:35:39,287 [wrapper] ==== wrapper stdout END ====
[2026-03-14 20:35:39] 2026-03-14 19:35:39,289 [wrapper] ==== wrapper stderr END ====
[2026-03-14 20:35:39]  *** Error codes and diagnostics ***
[2026-03-14 20:35:39]     "exeErrorCode": 0,
[2026-03-14 20:35:39]     "exeErrorDiag": "",
[2026-03-14 20:35:39]     "pilotErrorCode": 0,
[2026-03-14 20:35:39]     "pilotErrorDiag": "",
[2026-03-14 20:35:39]  *** Listing of results directory ***
[2026-03-14 20:35:39] total 622620
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc    585013 Mar 14 01:45 pilot3.tar.gz
[2026-03-14 20:35:39] -rwx------ 1 boinc boinc     36322 Mar 14 01:51 runpilot2-wrapper.sh
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc      5111 Mar 14 01:52 queuedata.json
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc       100 Mar 14 19:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 20:35:39] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 19:34 run_atlas
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc       105 Mar 14 19:34 job.xml
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc 446474272 Mar 14 19:34 EVNT.46701403._002496.pool.root.1
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc    597530 Mar 14 19:34 input.tar.gz
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc     15845 Mar 14 19:34 start_atlas.sh
[2026-03-14 20:35:39] drwxrwx--x 2 boinc boinc      4096 Mar 14 19:34 shared
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc         0 Mar 14 19:34 boinc_setup_complete
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc      6439 Mar 14 19:34 init_data.xml
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc         0 Mar 14 19:34 boinc_lockfile
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc      2568 Mar 14 19:34 pandaJob.out
[2026-03-14 20:35:39] -rw------- 1 boinc boinc   1005889 Mar 14 19:34 agis_schedconf.cvmfs.json
[2026-03-14 20:35:39] -rw------- 1 boinc boinc   1511579 Mar 14 19:34 agis_ddmendpoints.agis.ALL.json
[2026-03-14 20:35:39] -rw------- 1 boinc boinc       424 Mar 14 19:34 workernode_map.json
[2026-03-14 20:35:39] drwx------ 5 boinc boinc      4096 Mar 14 19:34 pilot3
[2026-03-14 20:35:39] -rw------- 1 boinc boinc        95 Mar 14 20:34 pilot_heartbeat.json
[2026-03-14 20:35:39] -rw------- 1 boinc boinc 185605996 Mar 14 20:34 HITS.48955015._021933.pool.root.1
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc       530 Mar 14 20:34 boinc_task_state.xml
[2026-03-14 20:35:39] -rw------- 1 boinc boinc      1018 Mar 14 20:35 memory_monitor_summary.json
[2026-03-14 20:35:39] -rw------- 1 boinc boinc    233958 Mar 14 20:35 log.48955015._021933.job.log.tgz.1
[2026-03-14 20:35:39] -rw------- 1 boinc boinc      6299 Mar 14 20:35 heartbeat.json
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc      8192 Mar 14 20:35 boinc_mmap_file
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc        27 Mar 14 20:35 wrapper_checkpoint.txt
[2026-03-14 20:35:39] -rw------- 1 boinc boinc       746 Mar 14 20:35 pilotlog.txt
[2026-03-14 20:35:39] -rw------- 1 boinc boinc    547626 Mar 14 20:35 log.48955015._021933.job.log.1
[2026-03-14 20:35:39] -rw------- 1 boinc boinc       357 Mar 14 20:35 output.list
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc       620 Mar 14 20:35 runtime_log
[2026-03-14 20:35:39] -rw------- 1 boinc boinc    798720 Mar 14 20:35 result.tar.gz
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc      8901 Mar 14 20:35 runtime_log.err
[2026-03-14 20:35:39] -rw------- 1 boinc boinc       658 Mar 14 20:35 pYcKDm9OSL9n9Rq4apOajLDm4fhM0noT9bVooX4SDm2loLDmbb0Iym.diag
[2026-03-14 20:35:39] -rw-r--r-- 1 boinc boinc     12555 Mar 14 20:35 stderr.txt
[2026-03-14 20:35:39] HITS file was successfully produced:
[2026-03-14 20:35:39] -rw------- 1 boinc boinc 185605996 Mar 14 20:34 shared/HITS.pool.root.1
[2026-03-14 20:35:39]  *** Contents of shared directory: ***
[2026-03-14 20:35:39] total 618652
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc 446474272 Mar 14 19:34 ATLAS.root_0
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc    597530 Mar 14 19:34 input.tar.gz
[2026-03-14 20:35:39] -rw-r--r-- 2 boinc boinc     15845 Mar 14 19:34 start_atlas.sh
[2026-03-14 20:35:39] -rw------- 1 boinc boinc 185605996 Mar 14 20:34 HITS.pool.root.1
[2026-03-14 20:35:39] -rw------- 1 boinc boinc    798720 Mar 14 20:35 result.tar.gz
20:35:40 (551201): run_atlas exited; CPU time 13262.352152
20:35:40 (551201): called boinc_finish(0)

</stderr_txt>
]]>

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