Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:22:15 (28788): wrapper (7.7.26015): starting
22:22:15 (28788): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 22:22:15] Arguments: --nthreads 3
[2026-03-14 22:22:15] Threads: 3
[2026-03-14 22:22:15] Checking for CVMFS
[2026-03-14 22:22:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 22:22:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 22:22:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 22:22:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 22:22:16] 2.9.2.0 3041 155 53100 157290 0 49 31037612 36864001 0 130560 0 74528 99.993 5440 19781 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 22:22:16] CVMFS is ok
[2026-03-14 22:22:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 22:22:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 22:22:16] Further information can be found at the LHC@home message board.
[2026-03-14 22:22:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 22:22:16] Checking for apptainer binary...
[2026-03-14 22:22:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 22:22:16] Running /usr/bin/apptainer --version
[2026-03-14 22:22:16] apptainer version 1.4.1-1.1
[2026-03-14 22:22:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 22:22:16] atlasA230
[2026-03-14 22:22:16] apptainer works
[2026-03-14 22:22:16] Set ATHENA_PROC_NUMBER=3
[2026-03-14 22:22:16] Set ATHENA_CORE_NUMBER=3
[2026-03-14 22:22:16] Starting ATLAS job with PandaID=7046258841
[2026-03-14 22:22:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 23:40:37]  *** The last 200 lines of the pilot log: ***
[2026-03-14 23:40:37] 2026-03-14 22:39:51,683 | INFO     | all payload control threads have been joined
[2026-03-14 23:40:37] 2026-03-14 22:39:52,278 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 23:40:37] 2026-03-14 22:39:52,292 | INFO     | all data control threads have been joined
[2026-03-14 23:40:37] 2026-03-14 22:39:52,634 | INFO     | [job] retrieve thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,634 | INFO     | [job] queue monitor thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,634 | INFO     | [job] job monitor thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,634 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,684 | INFO     | all job control threads have been joined
[2026-03-14 23:40:37] 2026-03-14 22:39:52,689 | INFO     | [payload] control thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,711 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:52,788 | INFO     | [data] copytool_in thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,297 | INFO     | [data] control thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,346 | INFO     | [payload] failed_post thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,657 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,690 | INFO     | [job] control thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,732 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:53,985 | INFO     | [payload] validate_post thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:54,092 | INFO     | [job] validate thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:54,282 | INFO     | [data] copytool_out thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:39:55,635 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 23:40:37] 2026-03-14 22:40:21,857 | INFO     | PID=32826 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 23:40:37] 2026-03-14 22:40:21,858 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 23:40:37] 2026-03-14 22:40:21,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 23:40:37] 2026-03-14 22:40:21,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 23:40:37] 2026-03-14 22:40:31,108 | INFO     | [monitor] cgroup control has ended
[2026-03-14 23:40:37] 2026-03-14 22:40:32,757 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139782286141248)>', '<ExcThread(monitor, started 139781648410368)>']
[2026-03-14 23:40:37] 2026-03-14 22:40:32,916 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 23:40:37] 2026-03-14 22:40:32,916 | INFO     | [monitor] control thread has ended
[2026-03-14 23:40:37] 2026-03-14 22:40:37,782 | INFO     | all workflow threads have been joined
[2026-03-14 23:40:37] 2026-03-14 22:40:37,782 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 23:40:37] 2026-03-14 22:40:37,782 | INFO     | traces error code: 0
[2026-03-14 23:40:37] 2026-03-14 22:40:37,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 23:40:37] 2026-03-14 22:40:37,830 [wrapper] ==== pilot stdout END ====
[2026-03-14 23:40:37] 2026-03-14 22:40:37,832 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 23:40:37] 2026-03-14 22:40:37,834 [wrapper] pilotpid: 32826
[2026-03-14 23:40:37] 2026-03-14 22:40:37,837 [wrapper] Pilot exit status: 0
[2026-03-14 23:40:37] 2026-03-14 22:40:37,843 [wrapper] pandaids: 7046258841
[2026-03-14 23:40:37] 2026-03-14 22:40:37,859 [wrapper] cleanup supervisor_pilot   42398 32827
[2026-03-14 23:40:37] 2026-03-14 22:40:37,861 [wrapper] Test setup, not cleaning
[2026-03-14 23:40:37] 2026-03-14 22:40:37,863 [wrapper] apfmon messages muted
[2026-03-14 23:40:37] 2026-03-14 22:40:37,866 [wrapper] ==== wrapper stdout END ====
[2026-03-14 23:40:37] 2026-03-14 22:40:37,868 [wrapper] ==== wrapper stderr END ====
[2026-03-14 23:40:37]  *** Error codes and diagnostics ***
[2026-03-14 23:40:37]     "exeErrorCode": 0,
[2026-03-14 23:40:37]     "exeErrorDiag": "",
[2026-03-14 23:40:37]     "pilotErrorCode": 0,
[2026-03-14 23:40:37]     "pilotErrorDiag": "",
[2026-03-14 23:40:37]  *** Listing of results directory ***
[2026-03-14 23:40:37] total 614792
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc    585013 Mar 14 05:19 pilot3.tar.gz
[2026-03-14 23:40:37] -rwx------ 1 boinc boinc     36322 Mar 14 05:24 runpilot2-wrapper.sh
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      5111 Mar 14 05:27 queuedata.json
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc       100 Mar 14 22:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 23:40:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 22:22 run_atlas
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc       105 Mar 14 22:22 job.xml
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc 442530379 Mar 14 22:22 EVNT.46701403._002537.pool.root.1
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc    597534 Mar 14 22:22 input.tar.gz
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc     15845 Mar 14 22:22 start_atlas.sh
[2026-03-14 23:40:37] drwxrwx--x 2 boinc boinc      4096 Mar 14 22:22 shared
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc         0 Mar 14 22:22 boinc_setup_complete
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      6441 Mar 14 22:22 init_data.xml
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc         0 Mar 14 22:22 boinc_lockfile
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      2572 Mar 14 22:22 pandaJob.out
[2026-03-14 23:40:37] -rw------- 1 boinc boinc   1006481 Mar 14 22:22 agis_schedconf.cvmfs.json
[2026-03-14 23:40:37] -rw------- 1 boinc boinc   1511579 Mar 14 22:22 agis_ddmendpoints.agis.ALL.json
[2026-03-14 23:40:37] -rw------- 1 boinc boinc       420 Mar 14 22:22 workernode_map.json
[2026-03-14 23:40:37] drwx------ 5 boinc boinc      4096 Mar 14 22:22 pilot3
[2026-03-14 23:40:37] -rw------- 1 boinc boinc 181184740 Mar 14 23:39 HITS.48955015._024012.pool.root.1
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc       530 Mar 14 23:39 boinc_task_state.xml
[2026-03-14 23:40:37] -rw------- 1 boinc boinc      1019 Mar 14 23:39 memory_monitor_summary.json
[2026-03-14 23:40:37] -rw------- 1 boinc boinc        95 Mar 14 23:39 pilot_heartbeat.json
[2026-03-14 23:40:37] -rw------- 1 boinc boinc    271571 Mar 14 23:39 log.48955015._024012.job.log.tgz.1
[2026-03-14 23:40:37] -rw------- 1 boinc boinc      6318 Mar 14 23:39 heartbeat.json
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc        27 Mar 14 23:40 wrapper_checkpoint.txt
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      8192 Mar 14 23:40 boinc_mmap_file
[2026-03-14 23:40:37] -rw------- 1 boinc boinc      4746 Mar 14 23:40 pilotlog.txt
[2026-03-14 23:40:37] -rw------- 1 boinc boinc    683803 Mar 14 23:40 log.48955015._024012.job.log.1
[2026-03-14 23:40:37] -rw------- 1 boinc boinc       357 Mar 14 23:40 output.list
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc       620 Mar 14 23:40 runtime_log
[2026-03-14 23:40:37] -rw------- 1 boinc boinc    972800 Mar 14 23:40 result.tar.gz
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      8911 Mar 14 23:40 runtime_log.err
[2026-03-14 23:40:37] -rw------- 1 boinc boinc       660 Mar 14 23:40 OjJMDmFjVL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpAsLDm5S1ojn.diag
[2026-03-14 23:40:37] -rw-r--r-- 1 boinc boinc      6721 Mar 14 23:40 stderr.txt
[2026-03-14 23:40:37] HITS file was successfully produced:
[2026-03-14 23:40:37] -rw------- 1 boinc boinc 181184740 Mar 14 23:39 shared/HITS.pool.root.1
[2026-03-14 23:40:37]  *** Contents of shared directory: ***
[2026-03-14 23:40:37] total 610660
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc 442530379 Mar 14 22:22 ATLAS.root_0
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc    597534 Mar 14 22:22 input.tar.gz
[2026-03-14 23:40:37] -rw-r--r-- 2 boinc boinc     15845 Mar 14 22:22 start_atlas.sh
[2026-03-14 23:40:37] -rw------- 1 boinc boinc 181184740 Mar 14 23:39 HITS.pool.root.1
[2026-03-14 23:40:37] -rw------- 1 boinc boinc    972800 Mar 14 23:40 result.tar.gz
23:40:39 (28788): run_atlas exited; CPU time 12912.871693
23:40:39 (28788): called boinc_finish(0)

</stderr_txt>
]]>

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