Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:45:38 (928333): wrapper (7.7.26015): starting
20:45:38 (928333): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 20:45:38] Arguments: --nthreads 3
[2026-03-14 20:45:38] Threads: 3
[2026-03-14 20:45:38] Checking for CVMFS
[2026-03-14 20:45:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 20:45:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 20:45:38] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 20:45:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 20:45:38] 2.9.2.0 5444 5891 83776 157288 1 50 32808111 36864001 0 130560 0 2599351 99.984 224409 15354 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 20:45:38] CVMFS is ok
[2026-03-14 20:45:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 20:45:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 20:45:38] Further information can be found at the LHC@home message board.
[2026-03-14 20:45:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 20:45:38] Checking for apptainer binary...
[2026-03-14 20:45:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 20:45:38] Running /usr/bin/apptainer --version
[2026-03-14 20:45:38] apptainer version 1.4.1-1.1
[2026-03-14 20:45:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 20:45:39] magicA161a
[2026-03-14 20:45:39] apptainer works
[2026-03-14 20:45:39] Set ATHENA_PROC_NUMBER=3
[2026-03-14 20:45:39] Set ATHENA_CORE_NUMBER=3
[2026-03-14 20:45:39] Starting ATLAS job with PandaID=7054338047
[2026-03-14 20:45:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 22:25:15]  *** The last 200 lines of the pilot log: ***
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | job 7054338047 has completed (purged errors)
[2026-03-14 22:25:15] 2026-03-14 21:24:43,148 | INFO     | overall cleanup function is called
[2026-03-14 22:25:15] 2026-03-14 21:24:44,154 | INFO     | --- collectZombieJob: --- 10, [936813]
[2026-03-14 22:25:15] 2026-03-14 21:24:44,155 | INFO     | zombie collector waiting for pid 936813
[2026-03-14 22:25:15] 2026-03-14 21:24:44,156 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 22:25:15] 2026-03-14 21:24:44,156 | INFO     | collected zombie processes
[2026-03-14 22:25:15] 2026-03-14 21:24:44,156 | INFO     | will attempt to kill all subprocesses of pid=936813
[2026-03-14 22:25:15] 2026-03-14 21:24:44,197 | INFO     | process IDs to be killed: [936813] (in reverse order)
[2026-03-14 22:25:15] 2026-03-14 21:24:44,220 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 22:25:15] 2026-03-14 21:24:44,220 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 22:25:15] 2026-03-14 21:24:44,222 | INFO     | did not find any defunct processes belonging to 936813
[2026-03-14 22:25:15] 2026-03-14 21:24:44,223 | INFO     | did not find any defunct processes belonging to 936813
[2026-03-14 22:25:15] 2026-03-14 21:24:44,223 | INFO     | ready for new job
[2026-03-14 22:25:15] 2026-03-14 21:24:44,223 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | **************************************
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | **************************************
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | 
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | architecture information:
[2026-03-14 22:25:15] 2026-03-14 21:24:44,224 | INFO     | executing command: cat /etc/os-release
[2026-03-14 22:25:15] 2026-03-14 21:24:44,233 | INFO     | cat /etc/os-release:
[2026-03-14 22:25:15] NAME="CentOS Linux"
[2026-03-14 22:25:15] VERSION="7 (Core)"
[2026-03-14 22:25:15] ID="centos"
[2026-03-14 22:25:15] ID_LIKE="rhel fedora"
[2026-03-14 22:25:15] VERSION_ID="7"
[2026-03-14 22:25:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 22:25:15] ANSI_COLOR="0;31"
[2026-03-14 22:25:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 22:25:15] HOME_URL="https://www.centos.org/"
[2026-03-14 22:25:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 22:25:15] 
[2026-03-14 22:25:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 22:25:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 22:25:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 22:25:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 22:25:15] 
[2026-03-14 22:25:15] 2026-03-14 21:24:44,233 | INFO     | **************************************
[2026-03-14 22:25:15] 2026-03-14 21:24:44,736 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 22:25:15] 2026-03-14 21:24:44,749 | INFO     | sufficient remaining disk space (370238554112 B)
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | INFO     | update_server=False
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 22:25:15] 2026-03-14 21:24:44,750 | INFO     | aborting loop
[2026-03-14 22:25:15] 2026-03-14 21:24:44,845 | INFO     | all data control threads have been joined
[2026-03-14 22:25:15] 2026-03-14 21:24:45,019 | INFO     | all job control threads have been joined
[2026-03-14 22:25:15] 2026-03-14 21:24:45,295 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 22:25:15] 2026-03-14 21:24:45,678 | INFO     | all payload control threads have been joined
[2026-03-14 22:25:15] 2026-03-14 21:24:45,756 | INFO     | [job] queue monitor thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:45,756 | INFO     | [job] retrieve thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:45,756 | INFO     | [job] job monitor thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:45,850 | INFO     | [data] control thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:46,025 | INFO     | [job] control thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:46,064 | INFO     | [payload] failed_post thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:46,486 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:46,684 | INFO     | [payload] control thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:46,914 | INFO     | [payload] validate_post thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,081 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,087 | INFO     | [job] validate thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,124 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,232 | INFO     | [data] copytool_in thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,301 | INFO     | [data] copytool_out thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:47,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 22:25:15] 2026-03-14 21:24:51,577 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:55,023 | INFO     | [monitor] cgroup control has ended
[2026-03-14 22:25:15] 2026-03-14 21:24:55,238 | INFO     | job.realtimelogging is not enabled
[2026-03-14 22:25:15] 2026-03-14 21:24:56,244 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 22:25:15] 2026-03-14 21:24:58,015 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667418457920)>', '<ExcThread(monitor, started 139667076794112)>']
[2026-03-14 22:25:15] 2026-03-14 21:25:03,029 | INFO     | all workflow threads have been joined
[2026-03-14 22:25:15] 2026-03-14 21:25:03,029 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 22:25:15] 2026-03-14 21:25:03,029 | INFO     | traces error code: 0
[2026-03-14 22:25:15] 2026-03-14 21:25:03,029 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 22:25:15] 2026-03-14 21:25:15,290 | INFO     | PID=932381 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 22:25:15] 2026-03-14 21:25:15,291 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 22:25:15] 2026-03-14 21:25:15,291 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 22:25:15] 2026-03-14 21:25:15,291 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 22:25:15] 2026-03-14 21:25:15,291 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 22:25:15] 2026-03-14 21:25:15,291 | INFO     | [monitor] control thread has ended
[2026-03-14 22:25:15] 2026-03-14 21:25:15,335 [wrapper] ==== pilot stdout END ====
[2026-03-14 22:25:15] 2026-03-14 21:25:15,338 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 22:25:15] 2026-03-14 21:25:15,340 [wrapper] pilotpid: 932381
[2026-03-14 22:25:15] 2026-03-14 21:25:15,342 [wrapper] Pilot exit status: 0
[2026-03-14 22:25:15] 2026-03-14 21:25:15,350 [wrapper] pandaids: 7054338047
[2026-03-14 22:25:15] 2026-03-14 21:25:15,365 [wrapper] cleanup supervisor_pilot  942253 932382
[2026-03-14 22:25:15] 2026-03-14 21:25:15,367 [wrapper] Test setup, not cleaning
[2026-03-14 22:25:15] 2026-03-14 21:25:15,370 [wrapper] apfmon messages muted
[2026-03-14 22:25:15] 2026-03-14 21:25:15,372 [wrapper] ==== wrapper stdout END ====
[2026-03-14 22:25:15] 2026-03-14 21:25:15,374 [wrapper] ==== wrapper stderr END ====
[2026-03-14 22:25:15]  *** Error codes and diagnostics ***
[2026-03-14 22:25:15]     "exeErrorCode": 0,
[2026-03-14 22:25:15]     "exeErrorDiag": "",
[2026-03-14 22:25:15]     "pilotErrorCode": 0,
[2026-03-14 22:25:15]     "pilotErrorDiag": "",
[2026-03-14 22:25:15]  *** Listing of results directory ***
[2026-03-14 22:25:15] total 410256
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc    585013 Mar 14 05:19 pilot3.tar.gz
[2026-03-14 22:25:15] -rwx------ 1 boinc boinc     36322 Mar 14 05:22 runpilot2-wrapper.sh
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc      5111 Mar 14 05:24 queuedata.json
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc       100 Mar 14 20:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 22:25:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 20:45 run_atlas
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc       105 Mar 14 20:45 job.xml
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc 212510150 Mar 14 20:45 EVNT.48967083._000907.pool.root.1
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc    597530 Mar 14 20:45 input.tar.gz
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc     15845 Mar 14 20:45 start_atlas.sh
[2026-03-14 22:25:15] drwxrwx--x 2 boinc boinc      4096 Mar 14 20:45 shared
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc         0 Mar 14 20:45 boinc_setup_complete
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc      6449 Mar 14 20:45 init_data.xml
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc         0 Mar 14 20:45 boinc_lockfile
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc      2563 Mar 14 20:45 pandaJob.out
[2026-03-14 22:25:15] -rw------- 1 boinc boinc   1005897 Mar 14 20:45 agis_schedconf.cvmfs.json
[2026-03-14 22:25:15] -rw------- 1 boinc boinc   1511579 Mar 14 20:45 agis_ddmendpoints.agis.ALL.json
[2026-03-14 22:25:15] -rw------- 1 boinc boinc       427 Mar 14 20:45 workernode_map.json
[2026-03-14 22:25:15] drwx------ 5 boinc boinc      4096 Mar 14 20:45 pilot3
[2026-03-14 22:25:15] -rw------- 1 boinc boinc 201411585 Mar 14 22:24 HITS.48967085._022446.pool.root.1
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc       529 Mar 14 22:24 boinc_task_state.xml
[2026-03-14 22:25:15] -rw------- 1 boinc boinc      1014 Mar 14 22:24 memory_monitor_summary.json
[2026-03-14 22:25:15] -rw------- 1 boinc boinc    270590 Mar 14 22:24 log.48967085._022446.job.log.tgz.1
[2026-03-14 22:25:15] -rw------- 1 boinc boinc      6307 Mar 14 22:24 heartbeat.json
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc      8192 Mar 14 22:24 boinc_mmap_file
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc        27 Mar 14 22:24 wrapper_checkpoint.txt
[2026-03-14 22:25:15] -rw------- 1 boinc boinc       746 Mar 14 22:25 pilotlog.txt
[2026-03-14 22:25:15] -rw------- 1 boinc boinc        95 Mar 14 22:25 pilot_heartbeat.json
[2026-03-14 22:25:15] -rw------- 1 boinc boinc    859687 Mar 14 22:25 log.48967085._022446.job.log.1
[2026-03-14 22:25:15] -rw------- 1 boinc boinc       357 Mar 14 22:25 output.list
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc       620 Mar 14 22:25 runtime_log
[2026-03-14 22:25:15] -rw------- 1 boinc boinc   1146880 Mar 14 22:25 result.tar.gz
[2026-03-14 22:25:15] -rw------- 1 boinc boinc       661 Mar 14 22:25 sscMDmYhVL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmk7rLDmOAu85n.diag
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc      8916 Mar 14 22:25 runtime_log.err
[2026-03-14 22:25:15] -rw-r--r-- 1 boinc boinc     11295 Mar 14 22:25 stderr.txt
[2026-03-14 22:25:15] HITS file was successfully produced:
[2026-03-14 22:25:15] -rw------- 1 boinc boinc 201411585 Mar 14 22:24 shared/HITS.pool.root.1
[2026-03-14 22:25:15]  *** Contents of shared directory: ***
[2026-03-14 22:25:15] total 405952
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc 212510150 Mar 14 20:45 ATLAS.root_0
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc    597530 Mar 14 20:45 input.tar.gz
[2026-03-14 22:25:15] -rw-r--r-- 2 boinc boinc     15845 Mar 14 20:45 start_atlas.sh
[2026-03-14 22:25:15] -rw------- 1 boinc boinc 201411585 Mar 14 22:24 HITS.pool.root.1
[2026-03-14 22:25:15] -rw------- 1 boinc boinc   1146880 Mar 14 22:25 result.tar.gz
22:25:16 (928333): run_atlas exited; CPU time 16843.264536
22:25:16 (928333): called boinc_finish(0)

</stderr_txt>
]]>

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