Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:13:22 (204528): wrapper (7.7.26015): starting
08:13:22 (204528): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 08:13:22] Arguments: --nthreads 4
[2026-03-15 08:13:22] Threads: 4
[2026-03-15 08:13:22] Checking for CVMFS
[2026-03-15 08:13:22] No cvmfs_config command found, will try listing directly
[2026-03-15 08:13:22] CVMFS is ok
[2026-03-15 08:13:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 08:13:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 08:13:22] Further information can be found at the LHC@home message board.
[2026-03-15 08:13:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 08:13:22] Checking for apptainer binary...
[2026-03-15 08:13:22] which: no apptainer in ((null))
[2026-03-15 08:13:22] apptainer is not installed, using version from CVMFS
[2026-03-15 08:13:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 08:13:22] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot216/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-03-15 08:13:22] apptainer works
[2026-03-15 08:13:22] Set ATHENA_PROC_NUMBER=4
[2026-03-15 08:13:22] Set ATHENA_CORE_NUMBER=4
[2026-03-15 08:13:22] Starting ATLAS job with PandaID=7046259307
[2026-03-15 08:13:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot216/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 09:30:48]  *** The last 200 lines of the pilot log: ***
[2026-03-15 09:30:48]  filesize=271424
[2026-03-15 09:30:48]  filetype=log
[2026-03-15 09:30:48]  guid=e7758fd1-0d87-4c62-b34e-489a89b97d4d
[2026-03-15 09:30:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-15 09:30:48]  is_altstaged=None
[2026-03-15 09:30:48]  is_tar=False
[2026-03-15 09:30:48]  lfn=log.48955015._024095.job.log.tgz.1
[2026-03-15 09:30:48]  mtime=0
[2026-03-15 09:30:48]  protocol_id=None
[2026-03-15 09:30:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 09:30:48]  replicas=None
[2026-03-15 09:30:48]  scope=mc23_13p6TeV
[2026-03-15 09:30:48]  status=None
[2026-03-15 09:30:48]  status_code=0
[2026-03-15 09:30:48]  storage_token=
[2026-03-15 09:30:48]  surl=/var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7046259307/log.48955015._024095.job.log.tgz.1
[2026-03-15 09:30:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/08/log.48955015._024095.job.log.tgz.1
[2026-03-15 09:30:48]  workdir=None
[2026-03-15 09:30:48] ]
[2026-03-15 09:30:48] 2026-03-15 08:29:45,047 | INFO     | transferring file log.48955015._024095.job.log.tgz.1 from /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7046259307/log.48955015._024095.job.log.tgz.1 to /var/lib/
[2026-03-15 09:30:48] 2026-03-15 08:29:45,047 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7046259307/log.48955015._024095.job.log.tgz.1 /var/lib/boinc/var/slot216/slots/0/
[2026-03-15 09:30:48] 2026-03-15 08:29:45,064 | INFO     | adding to output.list: log.48955015._024095.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/45/08/log.48955015._024095.job.log.tg
[2026-03-15 09:30:48] 2026-03-15 08:29:45,065 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 09:30:48] 2026-03-15 08:29:45,065 | INFO     | summary of transferred files:
[2026-03-15 09:30:48] 2026-03-15 08:29:45,065 | INFO     |  -- lfn=log.48955015._024095.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 09:30:48] 2026-03-15 08:29:45,065 | INFO     | stage-out finished correctly
[2026-03-15 09:30:48] 2026-03-15 08:29:45,254 | INFO     | time since job start (4570s) is within the limit (345600.0s)
[2026-03-15 09:30:48] 2026-03-15 08:29:45,535 | INFO     | monitor loop #330: job 0:7046259307 is in state 'finished'
[2026-03-15 09:30:48] 2026-03-15 08:29:45,535 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,169 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 09:30:48] 2026-03-15 08:29:46,762 | INFO     | job 7046259307 has state=finished
[2026-03-15 09:30:48] 2026-03-15 08:29:46,762 | INFO     | preparing for final server update for job 7046259307 in state='finished'
[2026-03-15 09:30:48] 2026-03-15 08:29:46,762 | INFO     | reading metadata from: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7046259307/jobReport.json
[2026-03-15 09:30:48] 2026-03-15 08:29:46,763 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot216/slots/0/workernode_map.json
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | INFO     | this job has now completed (state=finished)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | INFO     | log transfer has been attempted: DONE
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | INFO     | job 7046259307 has finished - writing final server update
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2496038/.job.ad'
[2026-03-15 09:30:48] 2026-03-15 08:29:46,764 | INFO     | total number of processed events: 400 (read)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,781 | INFO     | using path: /var/lib/boinc/var/slot216/slots/0/PanDA_Pilot-7046259307/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,781 | INFO     | extracted standard info from prmon json
[2026-03-15 09:30:48] 2026-03-15 08:29:46,781 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 09:30:48] 2026-03-15 08:29:46,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 09:30:48] 2026-03-15 08:29:46,784 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 09:30:48] 2026-03-15 08:29:46,784 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 09:30:48] 2026-03-15 08:29:46,785 | INFO     | fitting pss+swap vs Time
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | sum of square deviations: 97479037.0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | sum of deviations: 858233796.5000001
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | mean x: 1773561183.5
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | mean y: 2322782.632352941
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | intersect: -15612625771.283278
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | chi2: 0.00017989127521334826
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | current memory leak: 8.80 B/s (using 68 data points, chi2=0.00)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | could have reported an average CPU frequency of 3588 MHz (6 samples)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | ..............................
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . Timing measurements:
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . get job = 0 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . initial setup = 5 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . payload setup = 4 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . stage-in = 0 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . payload execution = 4550 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,786 | INFO     | . stage-out = 0 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,787 | INFO     | . log creation = 0 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,787 | INFO     | ..............................
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | 
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | job summary report
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | --------------------------------------------------
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | PanDA job id: 7046259307
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | task id: 48955015
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | errors: (none)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | pilot state: finished 
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | transexitcode: 0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | exeerrorcode: 0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | exeerrordiag: 
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | exitcode: 0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | exitmsg: OK
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | cpuconsumptiontime: 17284 s
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | nevents: 400
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | neventsw: 0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | pid: 222071
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | pgrp: 222071
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | corecount: 4
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | event service: False
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | sizes: {0: 2280248, 11: 2280248, 4558: 2306448, 4559: 2315470, 4560: 2315526, 4561: 2315720}
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | --------------------------------------------------
[2026-03-15 09:30:48] 2026-03-15 08:29:46,834 | INFO     | 
[2026-03-15 09:30:48] 2026-03-15 08:29:46,835 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot216/slots/0
[2026-03-15 09:30:48] 2026-03-15 08:29:46,852 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,852 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,852 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,852 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | job 7046259307 has completed (purged errors)
[2026-03-15 09:30:48] 2026-03-15 08:29:46,853 | INFO     | overall cleanup function is called
[2026-03-15 09:30:48] 2026-03-15 08:29:47,860 | INFO     | --- collectZombieJob: --- 10, [222071]
[2026-03-15 09:30:48] 2026-03-15 08:29:47,860 | INFO     | zombie collector waiting for pid 222071
[2026-03-15 09:30:48] 2026-03-15 08:29:47,860 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 09:30:48] 2026-03-15 08:29:47,860 | INFO     | collected zombie processes
[2026-03-15 09:30:48] 2026-03-15 08:29:47,860 | INFO     | will attempt to kill all subprocesses of pid=222071
[2026-03-15 09:30:48] 2026-03-15 08:29:48,310 | INFO     | process IDs to be killed: [222071] (in reverse order)
[2026-03-15 09:30:48] 2026-03-15 08:29:48,540 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 09:30:48] 2026-03-15 08:29:48,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 09:30:48] 2026-03-15 08:29:48,570 | INFO     | did not find any defunct processes belonging to 222071
[2026-03-15 09:30:48] 2026-03-15 08:29:48,599 | INFO     | did not find any defunct processes belonging to 222071
[2026-03-15 09:30:48] 2026-03-15 08:29:48,599 | INFO     | ready for new job
[2026-03-15 09:30:48] 2026-03-15 08:29:48,600 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 09:30:48] 2026-03-15 08:29:48,601 | INFO     | **************************************
[2026-03-15 09:30:48] 2026-03-15 08:29:48,601 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 09:30:48] 2026-03-15 08:29:48,601 | INFO     | **************************************
[2026-03-15 09:30:48] 2026-03-15 08:29:48,601 | INFO     | 
[2026-03-15 09:30:48] 2026-03-15 08:29:48,607 | INFO     | architecture information:
[2026-03-15 09:30:48] 2026-03-15 08:29:48,607 | INFO     | executing command: cat /etc/os-release
[2026-03-15 09:30:48] 2026-03-15 08:29:48,621 | INFO     | cat /etc/os-release:
[2026-03-15 09:30:48] NAME="CentOS Linux"
[2026-03-15 09:30:48] VERSION="7 (Core)"
[2026-03-15 09:30:48] ID="centos"
[2026-03-15 09:30:48] ID_LIKE="rhel fedora"
[2026-03-15 09:30:48] VERSION_ID="7"
[2026-03-15 09:30:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 09:30:48] ANSI_COLOR="0;31"
[2026-03-15 09:30:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 09:30:48] HOME_URL="https://www.centos.org/"
[2026-03-15 09:30:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 09:30:48] 
[2026-03-15 09:30:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 09:30:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 09:30:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 09:30:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 09:30:48] 
[2026-03-15 09:30:48] 2026-03-15 08:29:48,621 | INFO     | **************************************
[2026-03-15 09:30:48] 2026-03-15 08:29:49,124 | INFO     | executing command: df -mP /var/lib/boinc/var/slot216/slots/0
[2026-03-15 09:30:48] 2026-03-15 08:29:49,139 | INFO     | sufficient remaining disk space (75538366464 B)
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | INFO     | update_server=False
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:30:48] 2026-03-15 08:29:49,140 | INFO     | aborting loop
[2026-03-15 09:30:48] 2026-03-15 08:29:49,878 | INFO     | all payload control threads have been joined
[2026-03-15 09:30:48] 2026-03-15 08:29:50,055 | INFO     | all data control threads have been joined
[2026-03-15 09:30:48] 2026-03-15 08:29:50,145 | INFO     | [job] retrieve thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,146 | INFO     | [job] job monitor thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,409 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,427 | INFO     | [payload] validate_post thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,428 | INFO     | [payload] failed_post thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,446 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,545 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,549 | INFO     | [data] copytool_in thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:50,584 | INFO     | all job control threads have been joined
[2026-03-15 09:30:48] 2026-03-15 08:29:50,622 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 09:30:48] 2026-03-15 08:29:50,883 | INFO     | [payload] control thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:51,060 | INFO     | [data] control thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:51,570 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:51,590 | INFO     | [job] control thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:51,641 | INFO     | [job] validate thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:51,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 09:30:48] 2026-03-15 08:29:52,222 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 09:30:48] 2026-03-15 08:29:52,627 | INFO     | [data] copytool_out thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:52,846 | INFO     | [job] queue monitor thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:29:56,228 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 09:30:48] 2026-03-15 08:30:18,902 | INFO     | PID=209175 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 09:30:48] 2026-03-15 08:30:18,903 | INFO     | .. there are 48 such processes running
[2026-03-15 09:30:48] 2026-03-15 08:30:18,903 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 09:30:48] 2026-03-15 08:30:18,903 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 09:30:48] 2026-03-15 08:30:18,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 09:30:48] 2026-03-15 08:30:42,166 | INFO     | [monitor] cgroup control has ended
[2026-03-15 09:30:48] 2026-03-15 08:30:43,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22616309708608)>', '<ExcThread(monitor, started 22616063866624)>']
[2026-03-15 09:30:48] 2026-03-15 08:30:44,028 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 09:30:48] 2026-03-15 08:30:44,029 | INFO     | [monitor] control thread has ended
[2026-03-15 09:30:48] 2026-03-15 08:30:48,104 | INFO     | all workflow threads have been joined
[2026-03-15 09:30:48] 2026-03-15 08:30:48,104 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 09:30:48] 2026-03-15 08:30:48,104 | INFO     | traces error code: 0
[2026-03-15 09:30:48] 2026-03-15 08:30:48,104 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 09:30:48] 2026-03-15 08:30:48,327 [wrapper] ==== pilot stdout END ====
[2026-03-15 09:30:48] 2026-03-15 08:30:48,330 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 09:30:48] 2026-03-15 08:30:48,333 [wrapper] pilotpid: 209175
[2026-03-15 09:30:48] 2026-03-15 08:30:48,336 [wrapper] Pilot exit status: 0
[2026-03-15 09:30:48] 2026-03-15 08:30:48,346 [wrapper] pandaids: 7046259307
[2026-03-15 09:30:48] 2026-03-15 08:30:48,476 [wrapper] cleanup supervisor_pilot  962280 209176
[2026-03-15 09:30:48] 2026-03-15 08:30:48,480 [wrapper] Test setup, not cleaning
[2026-03-15 09:30:48] 2026-03-15 08:30:48,483 [wrapper] apfmon messages muted
[2026-03-15 09:30:48] 2026-03-15 08:30:48,485 [wrapper] ==== wrapper stdout END ====
[2026-03-15 09:30:48] 2026-03-15 08:30:48,487 [wrapper] ==== wrapper stderr END ====
[2026-03-15 09:30:48]  *** Error codes and diagnostics ***
[2026-03-15 09:30:48]     "exeErrorCode": 0,
[2026-03-15 09:30:48]     "exeErrorDiag": "",
[2026-03-15 09:30:48]     "pilotErrorCode": 0,
[2026-03-15 09:30:48]     "pilotErrorDiag": "",
[2026-03-15 09:30:48]  *** Listing of results directory ***
[2026-03-15 09:30:48] total 605412
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc    585013 Mar 14 05:19 pilot3.tar.gz
[2026-03-15 09:30:48] -rwx------. 1 boinc boinc     36322 Mar 14 05:21 runpilot2-wrapper.sh
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc      5111 Mar 14 05:21 queuedata.json
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc       100 Mar 15 08:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 09:30:48] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 08:13 run_atlas
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc       105 Mar 15 08:13 job.xml
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc      6709 Mar 15 08:13 init_data.xml
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc 435138631 Mar 15 08:13 EVNT.46701403._002539.pool.root.1
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc     15845 Mar 15 08:13 start_atlas.sh
[2026-03-15 09:30:48] drwxrwx--x. 2 boinc boinc      4096 Mar 15 08:13 shared
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc    597537 Mar 15 08:13 input.tar.gz
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc         0 Mar 15 08:13 boinc_lockfile
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc      2571 Mar 15 08:13 pandaJob.out
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc   1006481 Mar 15 08:13 agis_schedconf.cvmfs.json
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc   1511579 Mar 15 08:13 agis_ddmendpoints.agis.ALL.json
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc       444 Mar 15 08:13 workernode_map.json
[2026-03-15 09:30:48] drwx------. 5 boinc boinc      4096 Mar 15 08:13 pilot3
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc       530 Mar 15 09:29 boinc_task_state.xml
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc 178975158 Mar 15 09:29 HITS.48955015._024095.pool.root.1
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc      1026 Mar 15 09:29 memory_monitor_summary.json
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc    271424 Mar 15 09:29 log.48955015._024095.job.log.tgz.1
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc      6350 Mar 15 09:29 heartbeat.json
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc        95 Mar 15 09:30 pilot_heartbeat.json
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc      8192 Mar 15 09:30 boinc_mmap_file
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc        27 Mar 15 09:30 wrapper_checkpoint.txt
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc      4829 Mar 15 09:30 pilotlog.txt
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc    671734 Mar 15 09:30 log.48955015._024095.job.log.1
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc       357 Mar 15 09:30 output.list
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc       620 Mar 15 09:30 runtime_log
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc    962560 Mar 15 09:30 result.tar.gz
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc      9221 Mar 15 09:30 runtime_log.err
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc       663 Mar 15 09:30 W3QKDmxfVL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKOpLDmHzvF8n.diag
[2026-03-15 09:30:48] -rw-r--r--. 1 boinc boinc     21088 Mar 15 09:30 stderr.txt
[2026-03-15 09:30:48] HITS file was successfully produced:
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc 178975158 Mar 15 09:29 shared/HITS.pool.root.1
[2026-03-15 09:30:48]  *** Contents of shared directory: ***
[2026-03-15 09:30:48] total 601276
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc 435138631 Mar 15 08:13 ATLAS.root_0
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc     15845 Mar 15 08:13 start_atlas.sh
[2026-03-15 09:30:48] -rw-r--r--. 2 boinc boinc    597537 Mar 15 08:13 input.tar.gz
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc 178975158 Mar 15 09:29 HITS.pool.root.1
[2026-03-15 09:30:48] -rw-------. 1 boinc boinc    962560 Mar 15 09:30 result.tar.gz
09:30:49 (204528): run_atlas exited; CPU time 17493.596245
09:30:49 (204528): called boinc_finish(0)

</stderr_txt>
]]>

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