Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:59:01 (499256): wrapper (7.7.26015): starting
20:59:01 (499256): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 20:59:01] Arguments: --nthreads 4
[2026-03-14 20:59:01] Threads: 4
[2026-03-14 20:59:01] Checking for CVMFS
[2026-03-14 20:59:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 20:59:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 20:59:01] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 20:59:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 20:59:01] 2.9.2.0 3079 2677 95340 157288 1 50 34076421 36864000 0 130560 0 1344140 99.986 96154 9109 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 20:59:01] CVMFS is ok
[2026-03-14 20:59:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 20:59:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 20:59:01] Further information can be found at the LHC@home message board.
[2026-03-14 20:59:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 20:59:01] Checking for apptainer binary...
[2026-03-14 20:59:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 20:59:01] Running /usr/bin/apptainer --version
[2026-03-14 20:59:01] apptainer version 1.4.1-1.1
[2026-03-14 20:59:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 20:59:02] thA317
[2026-03-14 20:59:02] apptainer works
[2026-03-14 20:59:02] Set ATHENA_PROC_NUMBER=4
[2026-03-14 20:59:02] Set ATHENA_CORE_NUMBER=4
[2026-03-14 20:59:02] Starting ATLAS job with PandaID=7046258793
[2026-03-14 20:59:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 22:09:26]  *** The last 200 lines of the pilot log: ***
[2026-03-14 22:09:26] 2026-03-14 21:08:45,050 | WARNING  | process 507870 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 22:09:26] 2026-03-14 21:08:45,088 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 22:09:26] 2026-03-14 21:08:45,136 | INFO     | number of running child processes to parent process 507870: 1
[2026-03-14 22:09:26] 2026-03-14 21:08:45,136 | INFO     | maximum number of monitored processes: 6
[2026-03-14 22:09:26] 2026-03-14 21:08:45,136 | INFO     | aborting job monitoring since job object (job id=7046258793) has expired
[2026-03-14 22:09:26] 2026-03-14 21:08:45,136 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 22:09:26] 2026-03-14 21:08:45,136 | INFO     | will abort loop
[2026-03-14 22:09:26] 2026-03-14 21:08:45,467 | INFO     | all job control threads have been joined
[2026-03-14 22:09:26] 2026-03-14 21:08:45,484 | INFO     | [job] retrieve thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,484 | INFO     | [job] queue monitor thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,527 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,578 | INFO     | all data control threads have been joined
[2026-03-14 22:09:26] 2026-03-14 21:08:45,850 | INFO     | [payload] control thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,963 | INFO     | [payload] validate_post thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:45,972 | INFO     | [job] validate thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,069 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,101 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,142 | INFO     | [job] job monitor thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,312 | INFO     | [data] copytool_in thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,473 | INFO     | [job] control thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,484 | INFO     | [data] copytool_out thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,583 | INFO     | [data] control thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:46,957 | INFO     | [payload] failed_post thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:08:48,485 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 22:09:26] 2026-03-14 21:09:15,516 | INFO     | PID=503369 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 22:09:26] 2026-03-14 21:09:15,516 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 22:09:26] 2026-03-14 21:09:15,516 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 22:09:26] 2026-03-14 21:09:15,516 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 22:09:26] 2026-03-14 21:09:19,664 | INFO     | [monitor] cgroup control has ended
[2026-03-14 22:09:26] 2026-03-14 21:09:21,590 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140690232764224)>', '<ExcThread(monitor, started 140689287403264)>']
[2026-03-14 22:09:26] 2026-03-14 21:09:22,553 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 22:09:26] 2026-03-14 21:09:22,553 | INFO     | [monitor] control thread has ended
[2026-03-14 22:09:26] 2026-03-14 21:09:26,610 | INFO     | all workflow threads have been joined
[2026-03-14 22:09:26] 2026-03-14 21:09:26,610 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 22:09:26] 2026-03-14 21:09:26,610 | INFO     | traces error code: 0
[2026-03-14 22:09:26] 2026-03-14 21:09:26,610 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 22:09:26] 2026-03-14 21:09:26,687 [wrapper] ==== pilot stdout END ====
[2026-03-14 22:09:26] 2026-03-14 21:09:26,692 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 22:09:26] 2026-03-14 21:09:26,696 [wrapper] pilotpid: 503369
[2026-03-14 22:09:26] 2026-03-14 21:09:26,701 [wrapper] Pilot exit status: 0
[2026-03-14 22:09:26] 2026-03-14 21:09:26,714 [wrapper] pandaids: 7046258793
[2026-03-14 22:09:26] 2026-03-14 21:09:26,738 [wrapper] cleanup supervisor_pilot  515077 503370
[2026-03-14 22:09:26] 2026-03-14 21:09:26,742 [wrapper] Test setup, not cleaning
[2026-03-14 22:09:26] 2026-03-14 21:09:26,746 [wrapper] apfmon messages muted
[2026-03-14 22:09:26] 2026-03-14 21:09:26,750 [wrapper] ==== wrapper stdout END ====
[2026-03-14 22:09:26] 2026-03-14 21:09:26,754 [wrapper] ==== wrapper stderr END ====
[2026-03-14 22:09:26]  *** Error codes and diagnostics ***
[2026-03-14 22:09:26]     "exeErrorCode": 0,
[2026-03-14 22:09:26]     "exeErrorDiag": "",
[2026-03-14 22:09:26]     "pilotErrorCode": 0,
[2026-03-14 22:09:26]     "pilotErrorDiag": "",
[2026-03-14 22:09:26]  *** Listing of results directory ***
[2026-03-14 22:09:26] total 608560
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc    585013 Mar 14 05:19 pilot3.tar.gz
[2026-03-14 22:09:26] -rwx------ 1 boinc boinc     36322 Mar 14 05:21 runpilot2-wrapper.sh
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      5111 Mar 14 05:21 queuedata.json
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc       100 Mar 14 20:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 22:09:26] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 20:59 run_atlas
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc       105 Mar 14 20:59 job.xml
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc 437034064 Mar 14 20:59 EVNT.46701403._002536.pool.root.1
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc    597535 Mar 14 20:59 input.tar.gz
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc     15845 Mar 14 20:59 start_atlas.sh
[2026-03-14 22:09:26] drwxrwx--x 2 boinc boinc      4096 Mar 14 20:59 shared
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc         0 Mar 14 20:59 boinc_setup_complete
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      6376 Mar 14 20:59 init_data.xml
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc         0 Mar 14 20:59 boinc_lockfile
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      2572 Mar 14 20:59 pandaJob.out
[2026-03-14 22:09:26] -rw------- 1 boinc boinc   1005897 Mar 14 20:59 agis_schedconf.cvmfs.json
[2026-03-14 22:09:26] -rw------- 1 boinc boinc   1511579 Mar 14 20:59 agis_ddmendpoints.agis.ALL.json
[2026-03-14 22:09:26] -rw------- 1 boinc boinc       421 Mar 14 20:59 workernode_map.json
[2026-03-14 22:09:26] drwx------ 5 boinc boinc      4096 Mar 14 20:59 pilot3
[2026-03-14 22:09:26] -rw------- 1 boinc boinc 180405160 Mar 14 22:08 HITS.48955015._023964.pool.root.1
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc       530 Mar 14 22:08 boinc_task_state.xml
[2026-03-14 22:09:26] -rw------- 1 boinc boinc        95 Mar 14 22:08 pilot_heartbeat.json
[2026-03-14 22:09:26] -rw------- 1 boinc boinc      1024 Mar 14 22:08 memory_monitor_summary.json
[2026-03-14 22:09:26] -rw------- 1 boinc boinc    284979 Mar 14 22:08 log.48955015._023964.job.log.tgz.1
[2026-03-14 22:09:26] -rw------- 1 boinc boinc      6315 Mar 14 22:08 heartbeat.json
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      8192 Mar 14 22:09 boinc_mmap_file
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc        27 Mar 14 22:09 wrapper_checkpoint.txt
[2026-03-14 22:09:26] -rw------- 1 boinc boinc      5269 Mar 14 22:09 pilotlog.txt
[2026-03-14 22:09:26] -rw------- 1 boinc boinc    617910 Mar 14 22:09 log.48955015._023964.job.log.1
[2026-03-14 22:09:26] -rw------- 1 boinc boinc       357 Mar 14 22:09 output.list
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc       620 Mar 14 22:09 runtime_log
[2026-03-14 22:09:26] -rw------- 1 boinc boinc    921600 Mar 14 22:09 result.tar.gz
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      8896 Mar 14 22:09 runtime_log.err
[2026-03-14 22:09:26] -rw------- 1 boinc boinc       657 Mar 14 22:09 EhXMDmyfVL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm95rLDmI2d4Mn.diag
[2026-03-14 22:09:26] -rw-r--r-- 1 boinc boinc      7324 Mar 14 22:09 stderr.txt
[2026-03-14 22:09:26] HITS file was successfully produced:
[2026-03-14 22:09:26] -rw------- 1 boinc boinc 180405160 Mar 14 22:08 shared/HITS.pool.root.1
[2026-03-14 22:09:26]  *** Contents of shared directory: ***
[2026-03-14 22:09:26] total 604480
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc 437034064 Mar 14 20:59 ATLAS.root_0
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc    597535 Mar 14 20:59 input.tar.gz
[2026-03-14 22:09:26] -rw-r--r-- 2 boinc boinc     15845 Mar 14 20:59 start_atlas.sh
[2026-03-14 22:09:26] -rw------- 1 boinc boinc 180405160 Mar 14 22:08 HITS.pool.root.1
[2026-03-14 22:09:26] -rw------- 1 boinc boinc    921600 Mar 14 22:09 result.tar.gz
22:09:28 (499256): run_atlas exited; CPU time 15204.533084
22:09:28 (499256): called boinc_finish(0)

</stderr_txt>
]]>

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