Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:58:38 (21317): wrapper (7.7.26015): starting
18:58:38 (21317): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 18:58:38] Arguments: --nthreads 8
[2026-03-14 18:58:38] Threads: 8
[2026-03-14 18:58:38] Checking for CVMFS
[2026-03-14 18:58:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 18:58:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 18:58:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 18:58:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 18:58:42] 2.11.2.0 13921 127888 138692 157285 1 53 17051993 25165824 4667 130560 152 44323726 99.821 34733683 1115 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 18:58:42] CVMFS is ok
[2026-03-14 18:58:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 18:58:42] Checking for apptainer binary...
[2026-03-14 18:58:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 18:58:42] Running /usr/bin/apptainer --version
[2026-03-14 18:58:42] apptainer version 1.3.2-1.el7
[2026-03-14 18:58:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 18:59:04] cg-vwn367.simple-grid.lan
[2026-03-14 18:59:04] apptainer works
[2026-03-14 18:59:04] Set ATHENA_PROC_NUMBER=8
[2026-03-14 18:59:04] Set ATHENA_CORE_NUMBER=8
[2026-03-14 18:59:04] Starting ATLAS job with PandaID=7046197740
[2026-03-14 18:59:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 22:55:43]  *** The last 200 lines of the pilot log: ***
[2026-03-14 22:55:43] 2026-03-14 21:54:59,017 | INFO     | job 7046197740 has finished - writing final server update
[2026-03-14 22:55:43] 2026-03-14 21:54:59,018 | INFO     | total number of processed events: 400 (read)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,020 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7046197740/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,020 | INFO     | extracted standard info from prmon json
[2026-03-14 22:55:43] 2026-03-14 21:54:59,020 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 22:55:43] 2026-03-14 21:54:59,021 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 22:55:43] 2026-03-14 21:54:59,021 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 22:55:43] 2026-03-14 21:54:59,021 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 22:55:43] 2026-03-14 21:54:59,025 | INFO     | fitting pss+swap vs Time
[2026-03-14 22:55:43] 2026-03-14 21:54:59,026 | INFO     | sum of square deviations: 3438620752.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,028 | INFO     | sum of deviations: 85509683185.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,028 | INFO     | mean x: 1773518473.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,028 | INFO     | mean y: 2428856.3139013452
[2026-03-14 22:55:43] 2026-03-14 21:54:59,028 | INFO     | intersect: -44100429145.915405
[2026-03-14 22:55:43] 2026-03-14 21:54:59,029 | INFO     | chi2: 6.052741831409127
[2026-03-14 22:55:43] 2026-03-14 21:54:59,029 | INFO     | sum of square deviations: 3212467674.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,031 | INFO     | sum of deviations: 98225591600.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,031 | INFO     | mean x: 1773518320.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,031 | INFO     | mean y: 2437250.100917431
[2026-03-14 22:55:43] 2026-03-14 21:54:59,031 | INFO     | intersect: -54225310355.69088
[2026-03-14 22:55:43] 2026-03-14 21:54:59,031 | INFO     | chi2: 5.324535714441716
[2026-03-14 22:55:43] 2026-03-14 21:54:59,032 | INFO     | current chi2=5.324535714441716 (change=12.031012345323818 %)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,032 | INFO     | right removable region: 217
[2026-03-14 22:55:43] 2026-03-14 21:54:59,032 | INFO     | sum of square deviations: 3212467674.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,034 | INFO     | sum of deviations: 12119750474.000002
[2026-03-14 22:55:43] 2026-03-14 21:54:59,034 | INFO     | mean x: 1773518625.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,034 | INFO     | mean y: 2478289.5045871558
[2026-03-14 22:55:43] 2026-03-14 21:54:59,034 | INFO     | intersect: -6688516104.827164
[2026-03-14 22:55:43] 2026-03-14 21:54:59,038 | INFO     | chi2: 1.726779023379801
[2026-03-14 22:55:43] 2026-03-14 21:54:59,038 | INFO     | current chi2=1.726779023379801 (change=71.471127111037 %)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,038 | INFO     | sum of square deviations: 2996454322.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,040 | INFO     | sum of deviations: -18426493504.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,040 | INFO     | mean x: 1773518778.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,040 | INFO     | mean y: 2499727.0422535213
[2026-03-14 22:55:43] 2026-03-14 21:54:59,040 | INFO     | intersect: 10908633687.471443
[2026-03-14 22:55:43] 2026-03-14 21:54:59,041 | INFO     | chi2: 0.8399650120453733
[2026-03-14 22:55:43] 2026-03-14 21:54:59,041 | INFO     | current chi2=0.8399650120453733 (change=51.35654298131782 %)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,041 | INFO     | sum of square deviations: 2790348132.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | sum of deviations: -22831154389.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | mean x: 1773518930.5
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | mean y: 2502945.9759615385
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | intersect: 14513769139.102869
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | chi2: 0.8036899369817836
[2026-03-14 22:55:43] 2026-03-14 21:54:59,043 | INFO     | current chi2=0.8036899369817836 (change=4.31864119854914 %)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,044 | INFO     | left removable region: 30
[2026-03-14 22:55:43] 2026-03-14 21:54:59,044 | INFO     | sum of square deviations: 2027639878.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,045 | INFO     | sum of deviations: -6091346906.000001
[2026-03-14 22:55:43] 2026-03-14 21:54:59,045 | INFO     | mean x: 1773519205.0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,045 | INFO     | mean y: 2511635.385026738
[2026-03-14 22:55:43] 2026-03-14 21:54:59,045 | INFO     | intersect: 5330440346.653119
[2026-03-14 22:55:43] 2026-03-14 21:54:59,046 | INFO     | chi2: 0.01093583875459243
[2026-03-14 22:55:43] 2026-03-14 21:54:59,046 | INFO     | current memory leak: -3.00 B/s (using 187 data points, chi2=0.01)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | ..............................
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . Timing measurements:
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . get job = 0 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . initial setup = 95 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . payload setup = 127 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . stage-in = 0 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . payload execution = 13696 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . stage-out = 3 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,047 | INFO     | . log creation = 1 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,048 | INFO     | ..............................
[2026-03-14 22:55:43] 2026-03-14 21:54:59,172 | INFO     | 
[2026-03-14 22:55:43] 2026-03-14 21:54:59,172 | INFO     | job summary report
[2026-03-14 22:55:43] 2026-03-14 21:54:59,172 | INFO     | --------------------------------------------------
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | PanDA job id: 7046197740
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | task id: 48955015
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | errors: (none)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | pilot state: finished 
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | transexitcode: 0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | exeerrorcode: 0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | exeerrordiag: 
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | exitcode: 0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | exitmsg: OK
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | cpuconsumptiontime: 52572 s
[2026-03-14 22:55:43] 2026-03-14 21:54:59,173 | INFO     | nevents: 400
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | neventsw: 0
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | pid: 29912
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | pgrp: 29912
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | corecount: 8
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | event service: False
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | sizes: {0: 2279146, 1: 2244609, 2: 2280292, 12: 2280292, 13828: 2310553, 13829: 2310552, 13833: 2319734, 13835: 2319790, 13836: 2319984}
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | --------------------------------------------------
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | 
[2026-03-14 22:55:43] 2026-03-14 21:54:59,174 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-14 22:55:43] 2026-03-14 21:54:59,708 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,708 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,708 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | job 7046197740 has completed (purged errors)
[2026-03-14 22:55:43] 2026-03-14 21:54:59,710 | INFO     | overall cleanup function is called
[2026-03-14 22:55:43] 2026-03-14 21:55:00,719 | INFO     | --- collectZombieJob: --- 10, [29912]
[2026-03-14 22:55:43] 2026-03-14 21:55:00,719 | INFO     | zombie collector waiting for pid 29912
[2026-03-14 22:55:43] 2026-03-14 21:55:00,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 22:55:43] 2026-03-14 21:55:00,719 | INFO     | collected zombie processes
[2026-03-14 22:55:43] 2026-03-14 21:55:00,719 | INFO     | will attempt to kill all subprocesses of pid=29912
[2026-03-14 22:55:43] 2026-03-14 21:55:00,853 | INFO     | process IDs to be killed: [29912] (in reverse order)
[2026-03-14 22:55:43] 2026-03-14 21:55:01,767 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 22:55:43] 2026-03-14 21:55:01,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 22:55:43] 2026-03-14 21:55:01,771 | INFO     | did not find any defunct processes belonging to 29912
[2026-03-14 22:55:43] 2026-03-14 21:55:01,774 | INFO     | did not find any defunct processes belonging to 29912
[2026-03-14 22:55:43] 2026-03-14 21:55:01,774 | INFO     | ready for new job
[2026-03-14 22:55:43] 2026-03-14 21:55:01,774 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 22:55:43] 2026-03-14 21:55:01,776 | INFO     | **************************************
[2026-03-14 22:55:43] 2026-03-14 21:55:01,776 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 22:55:43] 2026-03-14 21:55:01,776 | INFO     | **************************************
[2026-03-14 22:55:43] 2026-03-14 21:55:01,777 | INFO     | 
[2026-03-14 22:55:43] 2026-03-14 21:55:01,777 | INFO     | pilot is running in a VM
[2026-03-14 22:55:43] 2026-03-14 21:55:01,777 | INFO     | architecture information:
[2026-03-14 22:55:43] 2026-03-14 21:55:01,785 | INFO     | executing command: cat /etc/os-release
[2026-03-14 22:55:43] 2026-03-14 21:55:02,022 | INFO     | cat /etc/os-release:
[2026-03-14 22:55:43] NAME="CentOS Linux"
[2026-03-14 22:55:43] VERSION="7 (Core)"
[2026-03-14 22:55:43] ID="centos"
[2026-03-14 22:55:43] ID_LIKE="rhel fedora"
[2026-03-14 22:55:43] VERSION_ID="7"
[2026-03-14 22:55:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 22:55:43] ANSI_COLOR="0;31"
[2026-03-14 22:55:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 22:55:43] HOME_URL="https://www.centos.org/"
[2026-03-14 22:55:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 22:55:43] 
[2026-03-14 22:55:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 22:55:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 22:55:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 22:55:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 22:55:43] 
[2026-03-14 22:55:43] 2026-03-14 21:55:02,022 | INFO     | **************************************
[2026-03-14 22:55:43] 2026-03-14 21:55:02,526 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-14 22:55:43] 2026-03-14 21:55:02,776 | INFO     | sufficient remaining disk space (494982397952 B)
[2026-03-14 22:55:43] 2026-03-14 21:55:02,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 22:55:43] 2026-03-14 21:55:02,777 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 22:55:43] 2026-03-14 21:55:02,777 | INFO     | update_server=False
[2026-03-14 22:55:43] 2026-03-14 21:55:02,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 22:55:43] 2026-03-14 21:55:02,779 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 22:55:43] 2026-03-14 21:55:02,779 | INFO     | aborting loop
[2026-03-14 22:55:43] 2026-03-14 21:55:02,804 | INFO     | all data control threads have been joined
[2026-03-14 22:55:43] 2026-03-14 21:55:03,545 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 22:55:43] 2026-03-14 21:55:03,732 | INFO     | all payload control threads have been joined
[2026-03-14 22:55:43] 2026-03-14 21:55:03,783 | INFO     | [job] retrieve thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:03,785 | INFO     | [job] job monitor thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:03,810 | INFO     | [data] control thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:03,958 | INFO     | [payload] validate_post thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:03,962 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 22:55:43] 2026-03-14 21:55:04,191 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 22:55:43] 2026-03-14 21:55:04,312 | INFO     | [job] validate thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:04,341 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:04,493 | INFO     | all job control threads have been joined
[2026-03-14 22:55:43] 2026-03-14 21:55:04,694 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:04,738 | INFO     | [payload] control thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:04,801 | INFO     | [data] copytool_in thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:04,885 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:05,063 | INFO     | [payload] failed_post thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:05,197 | INFO     | [job] queue monitor thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:05,499 | INFO     | [job] control thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:05,552 | INFO     | [data] copytool_out thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:07,971 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:13,294 | INFO     | job.realtimelogging is not enabled
[2026-03-14 22:55:43] 2026-03-14 21:55:14,300 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 22:55:43] 2026-03-14 21:55:31,531 | INFO     | PID=25408 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 22:55:43] 2026-03-14 21:55:31,532 | INFO     | .. there are 9 such processes running
[2026-03-14 22:55:43] 2026-03-14 21:55:31,532 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 22:55:43] 2026-03-14 21:55:31,532 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 22:55:43] 2026-03-14 21:55:31,532 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 22:55:43] 2026-03-14 21:55:33,677 | INFO     | [monitor] cgroup control has ended
[2026-03-14 22:55:43] 2026-03-14 21:55:33,822 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140459004495680)>', '<ExcThread(monitor, started 140458567128832)>']
[2026-03-14 22:55:43] 2026-03-14 21:55:34,550 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 22:55:43] 2026-03-14 21:55:34,550 | INFO     | [monitor] control thread has ended
[2026-03-14 22:55:43] 2026-03-14 21:55:38,848 | INFO     | all workflow threads have been joined
[2026-03-14 22:55:43] 2026-03-14 21:55:38,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 22:55:43] 2026-03-14 21:55:38,848 | INFO     | traces error code: 0
[2026-03-14 22:55:43] 2026-03-14 21:55:38,848 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 22:55:43] 2026-03-14 21:55:39,140 [wrapper] ==== pilot stdout END ====
[2026-03-14 22:55:43] 2026-03-14 21:55:39,226 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 22:55:43] 2026-03-14 21:55:39,325 [wrapper] pilotpid: 25408
[2026-03-14 22:55:43] 2026-03-14 21:55:39,381 [wrapper] Pilot exit status: 0
[2026-03-14 22:55:43] 2026-03-14 21:55:39,797 [wrapper] pandaids: 7046197740
[2026-03-14 22:55:43] 2026-03-14 21:55:40,740 [wrapper] cleanup supervisor_pilot  5119 25409
[2026-03-14 22:55:43] 2026-03-14 21:55:40,814 [wrapper] Test setup, not cleaning
[2026-03-14 22:55:43] 2026-03-14 21:55:40,901 [wrapper] apfmon messages muted
[2026-03-14 22:55:43] 2026-03-14 21:55:41,013 [wrapper] ==== wrapper stdout END ====
[2026-03-14 22:55:43] 2026-03-14 21:55:41,077 [wrapper] ==== wrapper stderr END ====
[2026-03-14 22:55:43]  *** Error codes and diagnostics ***
[2026-03-14 22:55:43]     "exeErrorCode": 0,
[2026-03-14 22:55:43]     "exeErrorDiag": "",
[2026-03-14 22:55:43]     "pilotErrorCode": 0,
[2026-03-14 22:55:43]     "pilotErrorDiag": "",
[2026-03-14 22:55:43]  *** Listing of results directory ***
[2026-03-14 22:55:43] total 617268
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc    585013 Mar 14 05:19 pilot3.tar.gz
[2026-03-14 22:55:43] -rwx------. 1 boinc boinc     36322 Mar 14 05:20 runpilot2-wrapper.sh
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc      5111 Mar 14 05:21 queuedata.json
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc       100 Mar 14 18:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 22:55:43] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 18:58 run_atlas
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc       105 Mar 14 18:58 job.xml
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc 441220476 Mar 14 18:58 EVNT.46701403._002531.pool.root.1
[2026-03-14 22:55:43] drwxrwx--x. 2 boinc boinc        68 Mar 14 18:58 shared
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc    597538 Mar 14 18:58 input.tar.gz
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc      6391 Mar 14 18:58 init_data.xml
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc     15845 Mar 14 18:58 start_atlas.sh
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc         0 Mar 14 18:58 boinc_lockfile
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc      2571 Mar 14 18:59 pandaJob.out
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc       415 Mar 14 19:04 workernode_map.json
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc   1005897 Mar 14 19:04 agis_schedconf.cvmfs.json
[2026-03-14 22:55:43] drwx------. 5 boinc boinc      4096 Mar 14 19:04 pilot3
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc 182138966 Mar 14 22:53 HITS.48955015._023701.pool.root.1
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc       532 Mar 14 22:53 boinc_task_state.xml
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc        95 Mar 14 22:54 pilot_heartbeat.json
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc      1013 Mar 14 22:54 memory_monitor_summary.json
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc   1511579 Mar 14 22:54 agis_ddmendpoints.agis.ALL.json
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc    467160 Mar 14 22:54 log.48955015._023701.job.log.tgz.1
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc      6321 Mar 14 22:54 heartbeat.json
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc        28 Mar 14 22:55 wrapper_checkpoint.txt
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc      4952 Mar 14 22:55 pilotlog.txt
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc   1934116 Mar 14 22:55 log.48955015._023701.job.log.1
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc       357 Mar 14 22:55 output.list
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc       620 Mar 14 22:55 runtime_log
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc   2416640 Mar 14 22:55 result.tar.gz
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc      8192 Mar 14 22:55 boinc_mmap_file
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc      8816 Mar 14 22:55 runtime_log.err
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc       655 Mar 14 22:55 9xxNDmnfVL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmfMpLDmpsrIPo.diag
[2026-03-14 22:55:43] -rw-r--r--. 1 boinc boinc     20711 Mar 14 22:55 stderr.txt
[2026-03-14 22:55:43] HITS file was successfully produced:
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc 182138966 Mar 14 22:53 shared/HITS.pool.root.1
[2026-03-14 22:55:43]  *** Contents of shared directory: ***
[2026-03-14 22:55:43] total 611712
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc 441220476 Mar 14 18:58 ATLAS.root_0
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc    597538 Mar 14 18:58 input.tar.gz
[2026-03-14 22:55:43] -rw-r--r--. 2 boinc boinc     15845 Mar 14 18:58 start_atlas.sh
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc 182138966 Mar 14 22:53 HITS.pool.root.1
[2026-03-14 22:55:43] -rw-------. 1 boinc boinc   2416640 Mar 14 22:55 result.tar.gz
22:55:45 (21317): run_atlas exited; CPU time 52784.874488
22:55:45 (21317): called boinc_finish(0)

</stderr_txt>
]]>

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