Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:51 (3236616): wrapper (7.7.26015): starting
00:04:51 (3236616): wrapper: running run_atlas (--nthreads 8)
[2026-03-15 00:04:51] Arguments: --nthreads 8
[2026-03-15 00:04:51] Threads: 8
[2026-03-15 00:04:51] Checking for CVMFS
[2026-03-15 00:04:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 00:04:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 00:04:52] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 00:04:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 00:04:53] 2.13.3.0 9330 186460 233844 157300 1 387 25727087 32935937 25524 16776704 0 770488616 99.686 620927409 32429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-15 00:04:53] CVMFS is ok
[2026-03-15 00:04:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 00:04:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 00:04:53] Further information can be found at the LHC@home message board.
[2026-03-15 00:04:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 00:04:53] Checking for apptainer binary...
[2026-03-15 00:04:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 00:04:53] Running /usr/bin/apptainer --version
[2026-03-15 00:04:53] apptainer version 1.4.5-2.el9
[2026-03-15 00:04:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 00:04:55] c-5-5.aglt2.org
[2026-03-15 00:04:55] apptainer works
[2026-03-15 00:04:56] Set ATHENA_PROC_NUMBER=8
[2026-03-15 00:04:56] Set ATHENA_CORE_NUMBER=8
[2026-03-15 00:04:56] Starting ATLAS job with PandaID=7045287082
[2026-03-15 00:04:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:20:07 (3236616): BOINC client no longer exists - exiting
00:20:07 (3236616): timer handler: client dead, exiting
00:28:31 (3298489): wrapper (7.7.26015): starting
00:28:31 (3298489): wrapper: running run_atlas (--nthreads 10)
[2026-03-15 00:28:31] Arguments: --nthreads 10
[2026-03-15 00:28:31] Threads: 10
[2026-03-15 00:28:31] This job has been restarted, cleaning up previous attempt
[2026-03-15 00:28:31] Checking for CVMFS
[2026-03-15 00:28:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-15 00:28:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-15 00:28:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-15 00:28:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-15 00:28:34] 2.13.3.0 9330 186484 227640 157302 1 14 25841939 32935937 24622 16776704 0 770559166 99.686 620931165 32429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-15 00:28:34] CVMFS is ok
[2026-03-15 00:28:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 00:28:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 00:28:34] Further information can be found at the LHC@home message board.
[2026-03-15 00:28:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 00:28:34] Checking for apptainer binary...
[2026-03-15 00:28:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-15 00:28:34] Running /usr/bin/apptainer --version
[2026-03-15 00:28:34] apptainer version 1.4.5-2.el9
[2026-03-15 00:28:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 00:28:35] c-5-5.aglt2.org
[2026-03-15 00:28:35] apptainer works
[2026-03-15 00:28:35] Set ATHENA_PROC_NUMBER=10
[2026-03-15 00:28:35] Set ATHENA_CORE_NUMBER=10
[2026-03-15 00:28:35] Starting ATLAS job with PandaID=7045287082
[2026-03-15 00:28:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 14:50:31]  *** The last 200 lines of the pilot log: ***
[2026-03-15 14:50:31] 2026-03-15 11:25:34,091 | INFO     | this job has now completed (state=finished)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,092 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,092 | INFO     | log transfer has been attempted: DONE
[2026-03-15 14:50:31] 2026-03-15 11:25:34,092 | INFO     | job 7045287082 has finished - writing final server update
[2026-03-15 14:50:31] 2026-03-15 11:25:34,092 | INFO     | total number of processed events: 400 (read)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,199 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7045287082/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,199 | INFO     | extracted standard info from prmon json
[2026-03-15 14:50:31] 2026-03-15 11:25:34,199 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 14:50:31] 2026-03-15 11:25:34,200 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 14:50:31] 2026-03-15 11:25:34,245 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 14:50:31] 2026-03-15 11:25:34,245 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 14:50:31] 2026-03-15 11:25:34,319 | INFO     | fitting pss+swap vs Time
[2026-03-15 14:50:31] 2026-03-15 11:25:34,320 | INFO     | sum of square deviations: 21059396982.813778
[2026-03-15 14:50:31] 2026-03-15 11:25:34,404 | INFO     | sum of deviations: 63664635835.495056
[2026-03-15 14:50:31] 2026-03-15 11:25:34,416 | INFO     | mean x: 1773561458.387255
[2026-03-15 14:50:31] 2026-03-15 11:25:34,416 | INFO     | mean y: 2579674.8259803923
[2026-03-15 14:50:31] 2026-03-15 11:25:34,417 | INFO     | intersect: -5359071680.729957
[2026-03-15 14:50:31] 2026-03-15 11:25:34,417 | INFO     | chi2: 3.30591501131091
[2026-03-15 14:50:31] 2026-03-15 11:25:34,418 | INFO     | sum of square deviations: 20294643396.411865
[2026-03-15 14:50:31] 2026-03-15 11:25:34,544 | INFO     | monitor loop #1229: job 0:7045287082 is in state 'finished'
[2026-03-15 14:50:31] 2026-03-15 11:25:34,549 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,514 | INFO     | sum of deviations: 89672770773.78905
[2026-03-15 14:50:31] 2026-03-15 11:25:34,558 | INFO     | mean x: 1773561305.8933003
[2026-03-15 14:50:31] 2026-03-15 11:25:34,558 | INFO     | mean y: 2584808.1811414394
[2026-03-15 14:50:31] 2026-03-15 11:25:34,559 | INFO     | intersect: -7833973505.760483
[2026-03-15 14:50:31] 2026-03-15 11:25:34,559 | INFO     | chi2: 2.6137948617184947
[2026-03-15 14:50:31] 2026-03-15 11:25:34,559 | INFO     | current chi2=2.6137948617184947 (change=20.935811937826124 %)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,560 | INFO     | right removable region: 402
[2026-03-15 14:50:31] 2026-03-15 11:25:34,560 | INFO     | sum of square deviations: 20294472228.828987
[2026-03-15 14:50:31] 2026-03-15 11:25:34,638 | INFO     | sum of deviations: -36438580957.43178
[2026-03-15 14:50:31] 2026-03-15 11:25:34,638 | INFO     | mean x: 1773561610.898263
[2026-03-15 14:50:31] 2026-03-15 11:25:34,638 | INFO     | mean y: 2599573.5260545905
[2026-03-15 14:50:31] 2026-03-15 11:25:34,638 | INFO     | intersect: 3187016867.704612
[2026-03-15 14:50:31] 2026-03-15 11:25:34,729 | INFO     | chi2: 0.9270886779237637
[2026-03-15 14:50:31] 2026-03-15 11:25:34,730 | INFO     | current chi2=0.9270886779237637 (change=71.95666934111108 %)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,730 | INFO     | sum of square deviations: 19548316596.060364
[2026-03-15 14:50:31] 2026-03-15 11:25:34,778 | INFO     | sum of deviations: -58832796151.06532
[2026-03-15 14:50:31] 2026-03-15 11:25:34,778 | INFO     | mean x: 1773561763.407035
[2026-03-15 14:50:31] 2026-03-15 11:25:34,778 | INFO     | mean y: 2604141.3090452263
[2026-03-15 14:50:31] 2026-03-15 11:25:34,778 | INFO     | intersect: 5340332184.289418
[2026-03-15 14:50:31] 2026-03-15 11:25:34,779 | INFO     | chi2: 0.8081952752099361
[2026-03-15 14:50:31] 2026-03-15 11:25:34,779 | INFO     | current chi2=0.8081952752099361 (change=12.82438298999532 %)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,779 | INFO     | left removable region: 20
[2026-03-15 14:50:31] 2026-03-15 11:25:34,780 | INFO     | sum of square deviations: 17284298644.293175
[2026-03-15 14:50:31] 2026-03-15 11:25:34,807 | INFO     | sum of deviations: -20869334384.989517
[2026-03-15 14:50:31] 2026-03-15 11:25:34,807 | INFO     | mean x: 1773561885.408377
[2026-03-15 14:50:31] 2026-03-15 11:25:34,807 | INFO     | mean y: 2607304.871727749
[2026-03-15 14:50:31] 2026-03-15 11:25:34,808 | INFO     | intersect: 2144033856.2626703
[2026-03-15 14:50:31] 2026-03-15 11:25:34,808 | INFO     | chi2: 0.08795592314470128
[2026-03-15 14:50:31] 2026-03-15 11:25:34,808 | INFO     | current memory leak: -1.21 B/s (using 382 data points, chi2=0.09)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,813 | INFO     | could have reported an average CPU frequency of 2600 MHz (17 samples)
[2026-03-15 14:50:31] 2026-03-15 11:25:34,813 | INFO     | ..............................
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . Timing measurements:
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . get job = 0 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . initial setup = 2 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . payload setup = 37 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . stage-in = 0 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . payload execution = 24903 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . stage-out = 8 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | . log creation = 3 s
[2026-03-15 14:50:31] 2026-03-15 11:25:34,814 | INFO     | ..............................
[2026-03-15 14:50:31] 2026-03-15 11:25:35,730 | INFO     | PID=3308048 has CPU usage=12.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,731 | INFO     | .. there are 42 such processes running
[2026-03-15 14:50:31] 2026-03-15 11:25:35,858 | INFO     | 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,858 | INFO     | job summary report
[2026-03-15 14:50:31] 2026-03-15 11:25:35,858 | INFO     | --------------------------------------------------
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | PanDA job id: 7045287082
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | task id: 48955010
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | errors: (none)
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | pilot state: finished 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | transexitcode: 0
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | exeerrorcode: 0
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | exeerrordiag: 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | exitcode: 0
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | exitmsg: OK
[2026-03-15 14:50:31] 2026-03-15 11:25:35,859 | INFO     | cpuconsumptiontime: 43356 s
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | nevents: 400
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | neventsw: 0
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | pid: 3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | pgrp: 3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | corecount: 10
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | event service: False
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | sizes: {0: 2279748, 1: 2279776, 2: 2280237, 24946: 2315299, 24947: 2315298, 24957: 2324352, 24958: 2324536, 24961: 2324794}
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | --------------------------------------------------
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | 
[2026-03-15 14:50:31] 2026-03-15 11:25:35,860 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-15 14:50:31] 2026-03-15 11:25:36,004 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,006 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 14:50:31] 2026-03-15 11:25:36,007 | INFO     | job 7045287082 has completed (purged errors)
[2026-03-15 14:50:31] 2026-03-15 11:25:36,008 | INFO     | overall cleanup function is called
[2026-03-15 14:50:31] 2026-03-15 11:25:37,046 | INFO     | --- collectZombieJob: --- 10, [3314311]
[2026-03-15 14:50:31] 2026-03-15 11:25:37,046 | INFO     | zombie collector waiting for pid 3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:37,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 14:50:31] 2026-03-15 11:25:37,047 | INFO     | collected zombie processes
[2026-03-15 14:50:31] 2026-03-15 11:25:37,047 | INFO     | will attempt to kill all subprocesses of pid=3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:38,750 | INFO     | process IDs to be killed: [3314311] (in reverse order)
[2026-03-15 14:50:31] 2026-03-15 11:25:38,885 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 14:50:31] 2026-03-15 11:25:38,885 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 14:50:31] 2026-03-15 11:25:38,910 | INFO     | did not find any defunct processes belonging to 3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:38,925 | INFO     | did not find any defunct processes belonging to 3314311
[2026-03-15 14:50:31] 2026-03-15 11:25:38,925 | INFO     | ready for new job
[2026-03-15 14:50:31] 2026-03-15 11:25:38,925 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 14:50:31] 2026-03-15 11:25:38,927 | INFO     | **************************************
[2026-03-15 14:50:31] 2026-03-15 11:25:38,927 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 14:50:31] 2026-03-15 11:25:38,928 | INFO     | **************************************
[2026-03-15 14:50:31] 2026-03-15 11:25:38,928 | INFO     | 
[2026-03-15 14:50:31] 2026-03-15 11:25:38,929 | INFO     | architecture information:
[2026-03-15 14:50:31] 2026-03-15 11:25:38,930 | INFO     | executing command: cat /etc/os-release
[2026-03-15 14:50:31] 2026-03-15 11:25:38,952 | INFO     | cat /etc/os-release:
[2026-03-15 14:50:31] NAME="CentOS Linux"
[2026-03-15 14:50:31] VERSION="7 (Core)"
[2026-03-15 14:50:31] ID="centos"
[2026-03-15 14:50:31] ID_LIKE="rhel fedora"
[2026-03-15 14:50:31] VERSION_ID="7"
[2026-03-15 14:50:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 14:50:31] ANSI_COLOR="0;31"
[2026-03-15 14:50:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 14:50:31] HOME_URL="https://www.centos.org/"
[2026-03-15 14:50:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 14:50:31] 
[2026-03-15 14:50:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 14:50:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 14:50:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 14:50:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 14:50:31] 
[2026-03-15 14:50:31] 2026-03-15 11:25:38,953 | INFO     | **************************************
[2026-03-15 14:50:31] 2026-03-15 11:25:39,457 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-15 14:50:31] 2026-03-15 11:25:39,548 | INFO     | sufficient remaining disk space (75136761856 B)
[2026-03-15 14:50:31] 2026-03-15 11:25:39,549 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 14:50:31] 2026-03-15 11:25:39,549 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 14:50:31] 2026-03-15 11:25:39,549 | INFO     | update_server=False
[2026-03-15 14:50:31] 2026-03-15 11:25:39,549 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 14:50:31] 2026-03-15 11:25:39,569 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 14:50:31] 2026-03-15 11:25:39,611 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 14:50:31] 2026-03-15 11:25:39,611 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 14:50:31] 2026-03-15 11:25:39,612 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:50:31] 2026-03-15 11:25:39,612 | INFO     | will abort loop
[2026-03-15 14:50:31] 2026-03-15 11:25:39,797 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 14:50:31] 2026-03-15 11:25:40,080 | INFO     | all payload control threads have been joined
[2026-03-15 14:50:31] 2026-03-15 11:25:40,397 | INFO     | all data control threads have been joined
[2026-03-15 14:50:31] 2026-03-15 11:25:40,555 | INFO     | [job] retrieve thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,617 | INFO     | [job] job monitor thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,715 | INFO     | [payload] failed_post thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,716 | INFO     | [payload] validate_post thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,764 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:50:31] 2026-03-15 11:25:40,794 | INFO     | all job control threads have been joined
[2026-03-15 14:50:31] 2026-03-15 11:25:40,817 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,936 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,952 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:40,953 | INFO     | [job] validate thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,096 | INFO     | [payload] control thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,403 | INFO     | [data] control thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,522 | INFO     | [data] copytool_in thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,611 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,770 | INFO     | [job] queue monitor thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,800 | INFO     | [job] control thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:41,804 | INFO     | [data] copytool_out thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:25:43,578 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 14:50:31] 2026-03-15 11:26:09,514 | INFO     | PID=3308048 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 14:50:31] 2026-03-15 11:26:09,514 | INFO     | .. there are 42 such processes running
[2026-03-15 14:50:31] 2026-03-15 11:26:09,515 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 14:50:31] 2026-03-15 11:26:09,515 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 14:50:31] 2026-03-15 11:26:09,515 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 14:50:31] 2026-03-15 11:26:17,998 | INFO     | [monitor] cgroup control has ended
[2026-03-15 14:50:31] 2026-03-15 11:26:18,870 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139946847844160)>', '<ExcThread(monitor, started 139946501318400)>']
[2026-03-15 14:50:31] 2026-03-15 11:26:19,617 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 14:50:31] 2026-03-15 11:26:19,617 | INFO     | [monitor] control thread has ended
[2026-03-15 14:50:31] 2026-03-15 11:26:23,896 | INFO     | all workflow threads have been joined
[2026-03-15 14:50:31] 2026-03-15 11:26:23,896 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 14:50:31] 2026-03-15 11:26:23,897 | INFO     | traces error code: 0
[2026-03-15 14:50:31] 2026-03-15 11:26:23,897 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 14:50:31] 2026-03-15 11:26:24,080 [wrapper] ==== pilot stdout END ====
[2026-03-15 14:50:31] 2026-03-15 11:26:24,136 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 14:50:31] 2026-03-15 11:26:24,171 [wrapper] pilotpid: 3308048
[2026-03-15 14:50:31] 2026-03-15 11:26:24,179 [wrapper] Pilot exit status: 0
[2026-03-15 14:50:31] 2026-03-15 11:26:24,379 [wrapper] pandaids: 7045287082 7045287082
[2026-03-15 14:50:31] 2026-03-15 11:26:24,571 [wrapper] cleanup supervisor_pilot   35840 3308049
[2026-03-15 14:50:31] 2026-03-15 11:26:24,612 [wrapper] Test setup, not cleaning
[2026-03-15 14:50:31] 2026-03-15 11:26:24,686 [wrapper] apfmon messages muted
[2026-03-15 14:50:31] 2026-03-15 11:26:24,766 [wrapper] ==== wrapper stdout END ====
[2026-03-15 14:50:31] 2026-03-15 11:26:24,805 [wrapper] ==== wrapper stderr END ====
[2026-03-15 14:50:31]  *** Error codes and diagnostics ***
[2026-03-15 14:50:31]     "exeErrorCode": 0,
[2026-03-15 14:50:31]     "exeErrorDiag": "",
[2026-03-15 14:50:31]     "pilotErrorCode": 0,
[2026-03-15 14:50:31]     "pilotErrorDiag": "",
[2026-03-15 14:50:31]  *** Listing of results directory ***
[2026-03-15 14:50:31] total 1045340
[2026-03-15 14:50:31] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas    585013 Mar 13 19:38 pilot3.tar.gz
[2026-03-15 14:50:31] -rwx------. 1 boincer umatlas     36322 Mar 13 19:38 runpilot2-wrapper.sh
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas      5111 Mar 13 19:39 queuedata.json
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas       100 Mar 15 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 14:50:31] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 15 00:04 run_atlas
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas       105 Mar 15 00:04 job.xml
[2026-03-15 14:50:31] -rw-r--r--. 3 boincer umatlas 440792088 Mar 15 00:04 EVNT.46701403._001705.pool.root.1
[2026-03-15 14:50:31] -rw-r--r--. 3 boincer umatlas 440792088 Mar 15 00:04 ATLAS.root_0
[2026-03-15 14:50:31] drwxrwx--x. 2 boincer umatlas      4096 Mar 15 00:04 shared
[2026-03-15 14:50:31] -rw-r--r--. 2 boincer umatlas    597530 Mar 15 00:04 input.tar.gz
[2026-03-15 14:50:31] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 00:04 start_atlas.sh
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas         0 Mar 15 00:04 boinc_lockfile
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas      2564 Mar 15 00:28 pandaJob.out
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas        57 Mar 15 00:28 setup.sh.local
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas   1006481 Mar 15 00:29 agis_schedconf.cvmfs.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas       431 Mar 15 00:29 workernode_map.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas 178157681 Mar 15 07:23 HITS.48955010._035526.pool.root.1
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas       531 Mar 15 07:24 boinc_task_state.xml
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas      1047 Mar 15 07:25 memory_monitor_summary.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas   1511579 Mar 15 07:25 agis_ddmendpoints.agis.ALL.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas    621628 Mar 15 07:25 log.48955010._035526.job.log.tgz.1
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas      6405 Mar 15 07:25 heartbeat.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas        96 Mar 15 07:26 pilot_heartbeat.json
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas      5006 Mar 15 07:26 pilotlog.txt
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas   2749018 Mar 15 07:26 log.48955010._035526.job.log.1
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas       357 Mar 15 07:26 output.list
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas       620 Mar 15 07:26 runtime_log
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas   3389440 Mar 15 07:26 result.tar.gz
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas      9414 Mar 15 07:26 runtime_log.err
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas       784 Mar 15 07:26 cABLDmjGRL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjFrLDm2BvyEm.diag
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas      6658 Mar 15 12:19 init_data.xml
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas        27 Mar 15 14:50 wrapper_checkpoint.txt
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 14:50 boinc_mmap_file
[2026-03-15 14:50:31] -rw-r--r--. 1 boincer umatlas     23695 Mar 15 14:50 stderr.txt
[2026-03-15 14:50:31] HITS file was successfully produced:
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas 178157681 Mar 15 07:23 shared/HITS.pool.root.1
[2026-03-15 14:50:31]  *** Contents of shared directory: ***
[2026-03-15 14:50:31] total 608364
[2026-03-15 14:50:31] -rw-r--r--. 3 boincer umatlas 440792088 Mar 15 00:04 ATLAS.root_0
[2026-03-15 14:50:31] -rw-r--r--. 2 boincer umatlas    597530 Mar 15 00:04 input.tar.gz
[2026-03-15 14:50:31] -rw-r--r--. 2 boincer umatlas     15845 Mar 15 00:04 start_atlas.sh
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas 178157681 Mar 15 07:23 HITS.pool.root.1
[2026-03-15 14:50:31] -rw-------. 1 boincer umatlas   3389440 Mar 15 07:26 result.tar.gz
14:50:33 (3298489): run_atlas exited; CPU time 44381.783341
14:50:33 (3298489): called boinc_finish(0)

</stderr_txt>
]]>

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