Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:49:18 (1540693): wrapper (7.7.26015): starting
15:49:18 (1540693): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 15:49:18] Arguments: --nthreads 4
[2026-03-14 15:49:18] Threads: 4
[2026-03-14 15:49:18] Checking for CVMFS
[2026-03-14 15:49:18] No cvmfs_config command found, will try listing directly
[2026-03-14 15:49:18] CVMFS is ok
[2026-03-14 15:49:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 15:49:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 15:49:18] Further information can be found at the LHC@home message board.
[2026-03-14 15:49:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 15:49:18] Checking for apptainer binary...
[2026-03-14 15:49:18] which: no apptainer in ((null))
[2026-03-14 15:49:18] apptainer is not installed, using version from CVMFS
[2026-03-14 15:49:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 15:49:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot76/slots/10/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-14 15:49:18] apptainer works
[2026-03-14 15:49:18] Set ATHENA_PROC_NUMBER=4
[2026-03-14 15:49:18] Set ATHENA_CORE_NUMBER=4
[2026-03-14 15:49:18] Starting ATLAS job with PandaID=7045286972
[2026-03-14 15:49:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot76/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 17:05:49]  *** The last 200 lines of the pilot log: ***
[2026-03-14 17:05:49]  lfn=log.48955010._035416.job.log.tgz.1
[2026-03-14 17:05:49]  mtime=0
[2026-03-14 17:05:49]  protocol_id=None
[2026-03-14 17:05:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 17:05:49]  replicas=None
[2026-03-14 17:05:49]  scope=mc23_13p6TeV
[2026-03-14 17:05:49]  status=None
[2026-03-14 17:05:49]  status_code=0
[2026-03-14 17:05:49]  storage_token=
[2026-03-14 17:05:49]  surl=/var/lib/boinc/var/slot76/slots/10/PanDA_Pilot-7045286972/log.48955010._035416.job.log.tgz.1
[2026-03-14 17:05:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c6/log.48955010._035416.job.log.tgz.1
[2026-03-14 17:05:49]  workdir=None
[2026-03-14 17:05:49] ]
[2026-03-14 17:05:49] 2026-03-14 16:05:13,874 | INFO     | transferring file log.48955010._035416.job.log.tgz.1 from /var/lib/boinc/var/slot76/slots/10/PanDA_Pilot-7045286972/log.48955010._035416.job.log.tgz.1 to /var/lib/
[2026-03-14 17:05:49] 2026-03-14 16:05:13,874 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot76/slots/10/PanDA_Pilot-7045286972/log.48955010._035416.job.log.tgz.1 /var/lib/boinc/var/slot76/slots/10/
[2026-03-14 17:05:49] 2026-03-14 16:05:13,893 | INFO     | adding to output.list: log.48955010._035416.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/35/c6/log.48955010._035416.job.log.tg
[2026-03-14 17:05:49] 2026-03-14 16:05:13,894 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 17:05:49] 2026-03-14 16:05:13,894 | INFO     | summary of transferred files:
[2026-03-14 17:05:49] 2026-03-14 16:05:13,894 | INFO     |  -- lfn=log.48955010._035416.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 17:05:49] 2026-03-14 16:05:13,894 | INFO     | stage-out finished correctly
[2026-03-14 17:05:49] 2026-03-14 16:05:14,405 | INFO     | time since job start (4543s) is within the limit (345600.0s)
[2026-03-14 17:05:49] 2026-03-14 16:05:15,925 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 17:05:49] 2026-03-14 16:05:15,974 | INFO     | job 7045286972 has state=finished
[2026-03-14 17:05:49] 2026-03-14 16:05:15,975 | INFO     | preparing for final server update for job 7045286972 in state='finished'
[2026-03-14 17:05:49] 2026-03-14 16:05:15,975 | INFO     | reading metadata from: /var/lib/boinc/var/slot76/slots/10/PanDA_Pilot-7045286972/jobReport.json
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot76/slots/10/workernode_map.json
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | INFO     | this job has now completed (state=finished)
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | INFO     | log transfer has been attempted: DONE
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | INFO     | job 7045286972 has finished - writing final server update
[2026-03-14 17:05:49] 2026-03-14 16:05:15,978 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1758536/.job.ad'
[2026-03-14 17:05:49] 2026-03-14 16:05:15,979 | INFO     | total number of processed events: 400 (read)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,002 | INFO     | using path: /var/lib/boinc/var/slot76/slots/10/PanDA_Pilot-7045286972/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,003 | INFO     | extracted standard info from prmon json
[2026-03-14 17:05:49] 2026-03-14 16:05:16,003 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 17:05:49] 2026-03-14 16:05:16,003 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 17:05:49] 2026-03-14 16:05:16,003 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 17:05:49] 2026-03-14 16:05:16,003 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 17:05:49] 2026-03-14 16:05:16,004 | INFO     | fitting pss+swap vs Time
[2026-03-14 17:05:49] 2026-03-14 16:05:16,004 | INFO     | sum of square deviations: 97479037.0
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | sum of deviations: 197196011.49999997
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | mean x: 1773502140.5
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | mean y: 2328394.9264705884
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | intersect: -3585392198.7157555
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | chi2: 0.0002484718963940084
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | current memory leak: 2.02 B/s (using 68 data points, chi2=0.00)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,005 | INFO     | could have reported an average CPU frequency of 3577 MHz (6 samples)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | ..............................
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . Timing measurements:
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . get job = 0 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . initial setup = 5 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . payload setup = 4 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . stage-in = 0 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . payload execution = 4522 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . stage-out = 0 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | . log creation = 0 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,006 | INFO     | ..............................
[2026-03-14 17:05:49] 2026-03-14 16:05:16,055 | INFO     | 
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | job summary report
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | --------------------------------------------------
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | PanDA job id: 7045286972
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | task id: 48955010
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | errors: (none)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | pilot state: finished 
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | transexitcode: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | exeerrorcode: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | exeerrordiag: 
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | exitcode: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | exitmsg: OK
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | cpuconsumptiontime: 17363 s
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | nevents: 400
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | neventsw: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | pid: 1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | pgrp: 1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | corecount: 4
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | event service: False
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | sizes: {0: 2279931, 1: 2280221, 11: 2280221, 4531: 2306396, 4532: 2315418, 4534: 2315796}
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | --------------------------------------------------
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | 
[2026-03-14 17:05:49] 2026-03-14 16:05:16,056 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot76/slots/10
[2026-03-14 17:05:49] 2026-03-14 16:05:16,074 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | job 7045286972 has completed (purged errors)
[2026-03-14 17:05:49] 2026-03-14 16:05:16,075 | INFO     | overall cleanup function is called
[2026-03-14 17:05:49] 2026-03-14 16:05:16,163 | INFO     | PID=1551767 has CPU usage=9.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 17:05:49] 2026-03-14 16:05:16,164 | INFO     | .. there are 47 such processes running
[2026-03-14 17:05:49] 2026-03-14 16:05:16,996 | WARNING  | process 1559673 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 17:05:49] 2026-03-14 16:05:17,083 | INFO     | --- collectZombieJob: --- 10, [1559673]
[2026-03-14 17:05:49] 2026-03-14 16:05:17,084 | INFO     | zombie collector waiting for pid 1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:17,084 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 17:05:49] 2026-03-14 16:05:17,084 | INFO     | collected zombie processes
[2026-03-14 17:05:49] 2026-03-14 16:05:17,084 | INFO     | will attempt to kill all subprocesses of pid=1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:17,677 | INFO     | using path: /var/lib/boinc/var/slot76/slots/10/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 17:05:49] 2026-03-14 16:05:18,712 | INFO     | process IDs to be killed: [1559673] (in reverse order)
[2026-03-14 17:05:49] 2026-03-14 16:05:18,841 | INFO     | number of running child processes to parent process 1559673: 1
[2026-03-14 17:05:49] 2026-03-14 16:05:18,842 | INFO     | maximum number of monitored processes: 6
[2026-03-14 17:05:49] 2026-03-14 16:05:18,842 | INFO     | aborting job monitoring since job object (job id=7045286972) has expired
[2026-03-14 17:05:49] 2026-03-14 16:05:18,942 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 17:05:49] 2026-03-14 16:05:18,942 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 17:05:49] 2026-03-14 16:05:18,968 | INFO     | did not find any defunct processes belonging to 1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:18,993 | INFO     | did not find any defunct processes belonging to 1559673
[2026-03-14 17:05:49] 2026-03-14 16:05:18,993 | INFO     | ready for new job
[2026-03-14 17:05:49] 2026-03-14 16:05:18,993 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 17:05:49] 2026-03-14 16:05:18,994 | INFO     | **************************************
[2026-03-14 17:05:49] 2026-03-14 16:05:18,994 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 17:05:49] 2026-03-14 16:05:18,994 | INFO     | **************************************
[2026-03-14 17:05:49] 2026-03-14 16:05:18,994 | INFO     | 
[2026-03-14 17:05:49] 2026-03-14 16:05:18,998 | INFO     | architecture information:
[2026-03-14 17:05:49] 2026-03-14 16:05:18,999 | INFO     | executing command: cat /etc/os-release
[2026-03-14 17:05:49] 2026-03-14 16:05:19,016 | INFO     | cat /etc/os-release:
[2026-03-14 17:05:49] NAME="CentOS Linux"
[2026-03-14 17:05:49] VERSION="7 (Core)"
[2026-03-14 17:05:49] ID="centos"
[2026-03-14 17:05:49] ID_LIKE="rhel fedora"
[2026-03-14 17:05:49] VERSION_ID="7"
[2026-03-14 17:05:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 17:05:49] ANSI_COLOR="0;31"
[2026-03-14 17:05:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 17:05:49] HOME_URL="https://www.centos.org/"
[2026-03-14 17:05:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 17:05:49] 
[2026-03-14 17:05:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 17:05:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 17:05:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 17:05:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 17:05:49] 
[2026-03-14 17:05:49] 2026-03-14 16:05:19,016 | INFO     | **************************************
[2026-03-14 17:05:49] 2026-03-14 16:05:19,519 | INFO     | executing command: df -mP /var/lib/boinc/var/slot76/slots/10
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | INFO     | sufficient remaining disk space (20103299072 B)
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | INFO     | update_server=False
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 17:05:49] 2026-03-14 16:05:19,532 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 17:05:49] 2026-03-14 16:05:19,533 | INFO     | will abort loop
[2026-03-14 17:05:49] 2026-03-14 16:05:19,533 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 17:05:49] 2026-03-14 16:05:20,306 | INFO     | all payload control threads have been joined
[2026-03-14 17:05:49] 2026-03-14 16:05:20,530 | INFO     | all data control threads have been joined
[2026-03-14 17:05:49] 2026-03-14 16:05:20,538 | INFO     | [job] job monitor thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:20,538 | INFO     | [job] retrieve thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:20,741 | INFO     | all job control threads have been joined
[2026-03-14 17:05:49] 2026-03-14 16:05:20,789 | INFO     | [payload] validate_post thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,062 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 17:05:49] 2026-03-14 16:05:21,233 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,312 | INFO     | [payload] control thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,357 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,384 | INFO     | [job] validate thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,384 | INFO     | [payload] failed_post thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,449 | INFO     | [data] copytool_in thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,535 | INFO     | [data] control thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,537 | INFO     | [data] copytool_out thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,746 | INFO     | [job] control thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,847 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:21,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 17:05:49] 2026-03-14 16:05:22,068 | INFO     | [job] queue monitor thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:25,985 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:30,405 | INFO     | job.realtimelogging is not enabled
[2026-03-14 17:05:49] 2026-03-14 16:05:31,410 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 17:05:49] 2026-03-14 16:05:38,466 | INFO     | [monitor] cgroup control has ended
[2026-03-14 17:05:49] 2026-03-14 16:05:39,471 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22986029872960)>', '<ExcThread(monitor, started 22985717036800)>']
[2026-03-14 17:05:49] 2026-03-14 16:05:44,496 | INFO     | all workflow threads have been joined
[2026-03-14 17:05:49] 2026-03-14 16:05:44,497 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 17:05:49] 2026-03-14 16:05:44,497 | INFO     | traces error code: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:44,497 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 17:05:49] 2026-03-14 16:05:48,806 | INFO     | PID=1551767 has CPU usage=10.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-03-14 17:05:49] 2026-03-14 16:05:48,806 | INFO     | .. there are 47 such processes running
[2026-03-14 17:05:49] 2026-03-14 16:05:48,807 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 17:05:49] 2026-03-14 16:05:48,807 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 17:05:49] 2026-03-14 16:05:48,807 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 17:05:49] 2026-03-14 16:05:48,807 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 17:05:49] 2026-03-14 16:05:48,807 | INFO     | [monitor] control thread has ended
[2026-03-14 17:05:49] 2026-03-14 16:05:49,012 [wrapper] ==== pilot stdout END ====
[2026-03-14 17:05:49] 2026-03-14 16:05:49,014 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 17:05:49] 2026-03-14 16:05:49,017 [wrapper] pilotpid: 1551767
[2026-03-14 17:05:49] 2026-03-14 16:05:49,019 [wrapper] Pilot exit status: 0
[2026-03-14 17:05:49] 2026-03-14 16:05:49,029 [wrapper] pandaids: 7045286972
[2026-03-14 17:05:49] 2026-03-14 16:05:49,157 [wrapper] cleanup supervisor_pilot 2200507 1551769
[2026-03-14 17:05:49] 2026-03-14 16:05:49,160 [wrapper] Test setup, not cleaning
[2026-03-14 17:05:49] 2026-03-14 16:05:49,162 [wrapper] apfmon messages muted
[2026-03-14 17:05:49] 2026-03-14 16:05:49,163 [wrapper] ==== wrapper stdout END ====
[2026-03-14 17:05:49] 2026-03-14 16:05:49,164 [wrapper] ==== wrapper stderr END ====
[2026-03-14 17:05:49]  *** Error codes and diagnostics ***
[2026-03-14 17:05:49]     "exeErrorCode": 0,
[2026-03-14 17:05:49]     "exeErrorDiag": "",
[2026-03-14 17:05:49]     "pilotErrorCode": 0,
[2026-03-14 17:05:49]     "pilotErrorDiag": "",
[2026-03-14 17:05:49]  *** Listing of results directory ***
[2026-03-14 17:05:49] total 609416
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc    585013 Mar 14 00:38 pilot3.tar.gz
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc      5111 Mar 14 00:38 queuedata.json
[2026-03-14 17:05:49] -rwx------. 1 boinc boinc     36322 Mar 14 00:38 runpilot2-wrapper.sh
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc       100 Mar 14 15:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 17:05:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 15:49 run_atlas
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc       105 Mar 14 15:49 job.xml
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc 438317901 Mar 14 15:49 EVNT.46701403._001703.pool.root.1
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc     15845 Mar 14 15:49 start_atlas.sh
[2026-03-14 17:05:49] drwxrwx--x. 2 boinc boinc      4096 Mar 14 15:49 shared
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc    597532 Mar 14 15:49 input.tar.gz
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc      6708 Mar 14 15:49 init_data.xml
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc         0 Mar 14 15:49 boinc_lockfile
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc      2564 Mar 14 15:49 pandaJob.out
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc   1004579 Mar 14 15:49 agis_schedconf.cvmfs.json
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc   1511579 Mar 14 15:49 agis_ddmendpoints.agis.ALL.json
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc       444 Mar 14 15:49 workernode_map.json
[2026-03-14 17:05:49] drwx------. 5 boinc boinc      4096 Mar 14 15:49 pilot3
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc 179887933 Mar 14 17:04 HITS.48955010._035416.pool.root.1
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc       530 Mar 14 17:05 boinc_task_state.xml
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc      1029 Mar 14 17:05 memory_monitor_summary.json
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc    284750 Mar 14 17:05 log.48955010._035416.job.log.tgz.1
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc      6353 Mar 14 17:05 heartbeat.json
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc      8192 Mar 14 17:05 boinc_mmap_file
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc        27 Mar 14 17:05 wrapper_checkpoint.txt
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc       824 Mar 14 17:05 pilotlog.txt
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc        95 Mar 14 17:05 pilot_heartbeat.json
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc    667804 Mar 14 17:05 log.48955010._035416.job.log.1
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc       357 Mar 14 17:05 output.list
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc       620 Mar 14 17:05 runtime_log
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc    972800 Mar 14 17:05 result.tar.gz
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc      9221 Mar 14 17:05 runtime_log.err
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc       663 Mar 14 17:05 YozMDmiGRL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmKErLDms0DDpm.diag
[2026-03-14 17:05:49] -rw-r--r--. 1 boinc boinc     14488 Mar 14 17:05 stderr.txt
[2026-03-14 17:05:49] HITS file was successfully produced:
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc 179887933 Mar 14 17:04 shared/HITS.pool.root.1
[2026-03-14 17:05:49]  *** Contents of shared directory: ***
[2026-03-14 17:05:49] total 605280
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc 438317901 Mar 14 15:49 ATLAS.root_0
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc     15845 Mar 14 15:49 start_atlas.sh
[2026-03-14 17:05:49] -rw-r--r--. 2 boinc boinc    597532 Mar 14 15:49 input.tar.gz
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc 179887933 Mar 14 17:04 HITS.pool.root.1
[2026-03-14 17:05:49] -rw-------. 1 boinc boinc    972800 Mar 14 17:05 result.tar.gz
17:05:50 (1540693): run_atlas exited; CPU time 17568.762120
17:05:50 (1540693): called boinc_finish(0)

</stderr_txt>
]]>

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