Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:01:54 (426255): wrapper (7.7.26015): starting
15:01:54 (426255): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 15:01:54] Arguments: --nthreads 4
[2026-03-14 15:01:54] Threads: 4
[2026-03-14 15:01:54] Checking for CVMFS
[2026-03-14 15:01:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 15:01:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 15:01:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 15:01:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 15:01:55] 2.9.2.0 3079 2320 94204 157279 1 50 34019264 36864000 0 130560 0 1145372 99.986 83802 9175 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 15:01:55] CVMFS is ok
[2026-03-14 15:01:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 15:01:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 15:01:55] Further information can be found at the LHC@home message board.
[2026-03-14 15:01:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 15:01:55] Checking for apptainer binary...
[2026-03-14 15:01:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 15:01:55] Running /usr/bin/apptainer --version
[2026-03-14 15:01:55] apptainer version 1.4.1-1.1
[2026-03-14 15:01:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 15:01:55] thA317
[2026-03-14 15:01:55] apptainer works
[2026-03-14 15:01:55] Set ATHENA_PROC_NUMBER=4
[2026-03-14 15:01:55] Set ATHENA_CORE_NUMBER=4
[2026-03-14 15:01:55] Starting ATLAS job with PandaID=7045286971
[2026-03-14 15:01:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 16:12:37]  *** The last 200 lines of the pilot log: ***
[2026-03-14 16:12:37] 2026-03-14 15:12:04,711 | INFO     | maximum number of monitored processes: 6
[2026-03-14 16:12:37] 2026-03-14 15:12:04,711 | INFO     | aborting job monitoring since job object (job id=7045286971) has expired
[2026-03-14 16:12:37] 2026-03-14 15:12:05,396 | INFO     | --- collectZombieJob: --- 10, [434892]
[2026-03-14 16:12:37] 2026-03-14 15:12:05,396 | INFO     | zombie collector waiting for pid 434892
[2026-03-14 16:12:37] 2026-03-14 15:12:05,396 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 16:12:37] 2026-03-14 15:12:05,396 | INFO     | collected zombie processes
[2026-03-14 16:12:37] 2026-03-14 15:12:05,396 | INFO     | will attempt to kill all subprocesses of pid=434892
[2026-03-14 16:12:37] 2026-03-14 15:12:05,449 | INFO     | process IDs to be killed: [434892] (in reverse order)
[2026-03-14 16:12:37] 2026-03-14 15:12:05,487 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 16:12:37] 2026-03-14 15:12:05,487 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 16:12:37] 2026-03-14 15:12:05,489 | INFO     | did not find any defunct processes belonging to 434892
[2026-03-14 16:12:37] 2026-03-14 15:12:05,491 | INFO     | did not find any defunct processes belonging to 434892
[2026-03-14 16:12:37] 2026-03-14 15:12:05,491 | INFO     | ready for new job
[2026-03-14 16:12:37] 2026-03-14 15:12:05,491 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | **************************************
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | **************************************
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | 
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | architecture information:
[2026-03-14 16:12:37] 2026-03-14 15:12:05,492 | INFO     | executing command: cat /etc/os-release
[2026-03-14 16:12:37] 2026-03-14 15:12:05,507 | INFO     | cat /etc/os-release:
[2026-03-14 16:12:37] NAME="CentOS Linux"
[2026-03-14 16:12:37] VERSION="7 (Core)"
[2026-03-14 16:12:37] ID="centos"
[2026-03-14 16:12:37] ID_LIKE="rhel fedora"
[2026-03-14 16:12:37] VERSION_ID="7"
[2026-03-14 16:12:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 16:12:37] ANSI_COLOR="0;31"
[2026-03-14 16:12:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 16:12:37] HOME_URL="https://www.centos.org/"
[2026-03-14 16:12:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 16:12:37] 
[2026-03-14 16:12:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 16:12:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 16:12:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 16:12:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 16:12:37] 
[2026-03-14 16:12:37] 2026-03-14 15:12:05,507 | INFO     | **************************************
[2026-03-14 16:12:37] 2026-03-14 15:12:06,010 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 16:12:37] 2026-03-14 15:12:06,028 | INFO     | sufficient remaining disk space (223184158720 B)
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | INFO     | update_server=False
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | INFO     | aborting loop
[2026-03-14 16:12:37] 2026-03-14 15:12:06,029 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:12:37] 2026-03-14 15:12:06,475 | INFO     | all job control threads have been joined
[2026-03-14 16:12:37] 2026-03-14 15:12:06,896 | INFO     | all data control threads have been joined
[2026-03-14 16:12:37] 2026-03-14 15:12:07,032 | INFO     | [job] queue monitor thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,034 | INFO     | [job] job monitor thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,035 | INFO     | [job] retrieve thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,039 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,236 | INFO     | all payload control threads have been joined
[2026-03-14 16:12:37] 2026-03-14 15:12:07,481 | INFO     | [job] control thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,503 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 16:12:37] 2026-03-14 15:12:07,579 | INFO     | [payload] validate_post thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,811 | INFO     | [payload] failed_post thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,902 | INFO     | [data] control thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:07,968 | INFO     | [job] validate thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:08,098 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:08,200 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:08,242 | INFO     | [payload] control thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:08,359 | INFO     | [data] copytool_in thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:08,878 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 16:12:37] 2026-03-14 15:12:09,509 | INFO     | [data] copytool_out thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:12,759 | INFO     | [monitor] cgroup control has ended
[2026-03-14 16:12:37] 2026-03-14 15:12:12,885 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:16,522 | INFO     | job.realtimelogging is not enabled
[2026-03-14 16:12:37] 2026-03-14 15:12:17,528 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 16:12:37] 2026-03-14 15:12:18,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140114429462336)>', '<ExcThread(monitor, started 140113501742848)>']
[2026-03-14 16:12:37] 2026-03-14 15:12:23,252 | INFO     | all workflow threads have been joined
[2026-03-14 16:12:37] 2026-03-14 15:12:23,252 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 16:12:37] 2026-03-14 15:12:23,253 | INFO     | traces error code: 0
[2026-03-14 16:12:37] 2026-03-14 15:12:23,253 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 16:12:37] 2026-03-14 15:12:37,135 | INFO     | PID=430387 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 16:12:37] 2026-03-14 15:12:37,136 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 16:12:37] 2026-03-14 15:12:37,136 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 16:12:37] 2026-03-14 15:12:37,136 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 16:12:37] 2026-03-14 15:12:37,136 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 16:12:37] 2026-03-14 15:12:37,136 | INFO     | [monitor] control thread has ended
[2026-03-14 16:12:37] 2026-03-14 15:12:37,211 [wrapper] ==== pilot stdout END ====
[2026-03-14 16:12:37] 2026-03-14 15:12:37,215 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 16:12:37] 2026-03-14 15:12:37,219 [wrapper] pilotpid: 430387
[2026-03-14 16:12:37] 2026-03-14 15:12:37,224 [wrapper] Pilot exit status: 0
[2026-03-14 16:12:37] 2026-03-14 15:12:37,237 [wrapper] pandaids: 7045286971
[2026-03-14 16:12:37] 2026-03-14 15:12:37,261 [wrapper] cleanup supervisor_pilot  440509 430388
[2026-03-14 16:12:37] 2026-03-14 15:12:37,266 [wrapper] Test setup, not cleaning
[2026-03-14 16:12:37] 2026-03-14 15:12:37,270 [wrapper] apfmon messages muted
[2026-03-14 16:12:37] 2026-03-14 15:12:37,274 [wrapper] ==== wrapper stdout END ====
[2026-03-14 16:12:37] 2026-03-14 15:12:37,278 [wrapper] ==== wrapper stderr END ====
[2026-03-14 16:12:37]  *** Error codes and diagnostics ***
[2026-03-14 16:12:37]     "exeErrorCode": 0,
[2026-03-14 16:12:37]     "exeErrorDiag": "",
[2026-03-14 16:12:37]     "pilotErrorCode": 0,
[2026-03-14 16:12:37]     "pilotErrorDiag": "",
[2026-03-14 16:12:37]  *** Listing of results directory ***
[2026-03-14 16:12:37] total 611488
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc    585013 Mar 14 00:38 pilot3.tar.gz
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc      5111 Mar 14 00:38 queuedata.json
[2026-03-14 16:12:37] -rwx------ 1 boinc boinc     36322 Mar 14 00:38 runpilot2-wrapper.sh
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc       100 Mar 14 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 16:12:37] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 15:01 run_atlas
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc       105 Mar 14 15:01 job.xml
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc 438317901 Mar 14 15:01 EVNT.46701403._001703.pool.root.1
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc    597530 Mar 14 15:01 input.tar.gz
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc     15845 Mar 14 15:01 start_atlas.sh
[2026-03-14 16:12:37] drwxrwx--x 2 boinc boinc      4096 Mar 14 15:01 shared
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc         0 Mar 14 15:01 boinc_setup_complete
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc      6376 Mar 14 15:01 init_data.xml
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc         0 Mar 14 15:01 boinc_lockfile
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc      2564 Mar 14 15:01 pandaJob.out
[2026-03-14 16:12:37] -rw------- 1 boinc boinc   1004579 Mar 14 15:02 agis_schedconf.cvmfs.json
[2026-03-14 16:12:37] -rw------- 1 boinc boinc   1511579 Mar 14 15:02 agis_ddmendpoints.agis.ALL.json
[2026-03-14 16:12:37] -rw------- 1 boinc boinc       420 Mar 14 15:02 workernode_map.json
[2026-03-14 16:12:37] drwx------ 5 boinc boinc      4096 Mar 14 15:02 pilot3
[2026-03-14 16:12:37] -rw------- 1 boinc boinc 182131626 Mar 14 16:11 HITS.48955010._035415.pool.root.1
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc       530 Mar 14 16:11 boinc_task_state.xml
[2026-03-14 16:12:37] -rw------- 1 boinc boinc      1020 Mar 14 16:11 memory_monitor_summary.json
[2026-03-14 16:12:37] -rw------- 1 boinc boinc    275361 Mar 14 16:11 log.48955010._035415.job.log.tgz.1
[2026-03-14 16:12:37] -rw------- 1 boinc boinc      6305 Mar 14 16:12 heartbeat.json
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc      8192 Mar 14 16:12 boinc_mmap_file
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc        27 Mar 14 16:12 wrapper_checkpoint.txt
[2026-03-14 16:12:37] -rw------- 1 boinc boinc       746 Mar 14 16:12 pilotlog.txt
[2026-03-14 16:12:37] -rw------- 1 boinc boinc        95 Mar 14 16:12 pilot_heartbeat.json
[2026-03-14 16:12:37] -rw------- 1 boinc boinc    622514 Mar 14 16:12 log.48955010._035415.job.log.1
[2026-03-14 16:12:37] -rw------- 1 boinc boinc       357 Mar 14 16:12 output.list
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc       620 Mar 14 16:12 runtime_log
[2026-03-14 16:12:37] -rw------- 1 boinc boinc    911360 Mar 14 16:12 result.tar.gz
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc      8896 Mar 14 16:12 runtime_log.err
[2026-03-14 16:12:37] -rw------- 1 boinc boinc       657 Mar 14 16:12 UvxMDmiGRL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJErLDmB4zGFo.diag
[2026-03-14 16:12:37] -rw-r--r-- 1 boinc boinc     10922 Mar 14 16:12 stderr.txt
[2026-03-14 16:12:37] HITS file was successfully produced:
[2026-03-14 16:12:37] -rw------- 1 boinc boinc 182131626 Mar 14 16:11 shared/HITS.pool.root.1
[2026-03-14 16:12:37]  *** Contents of shared directory: ***
[2026-03-14 16:12:37] total 607412
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc 438317901 Mar 14 15:01 ATLAS.root_0
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc    597530 Mar 14 15:01 input.tar.gz
[2026-03-14 16:12:37] -rw-r--r-- 2 boinc boinc     15845 Mar 14 15:01 start_atlas.sh
[2026-03-14 16:12:37] -rw------- 1 boinc boinc 182131626 Mar 14 16:11 HITS.pool.root.1
[2026-03-14 16:12:37] -rw------- 1 boinc boinc    911360 Mar 14 16:12 result.tar.gz
16:12:39 (426255): run_atlas exited; CPU time 15232.700004
16:12:39 (426255): called boinc_finish(0)

</stderr_txt>
]]>

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