Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:35:02 (70949): wrapper (7.7.26015): starting
15:35:02 (70949): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 15:35:02] Arguments: --nthreads 3
[2026-03-14 15:35:02] Threads: 3
[2026-03-14 15:35:02] Checking for CVMFS
[2026-03-14 15:35:02] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 15:35:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 15:35:03] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 15:35:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 15:35:03] 2.9.2.0 3076 396 61100 157280 0 50 24898091 36864001 0 130560 0 194300 99.988 13539 9467 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 15:35:03] CVMFS is ok
[2026-03-14 15:35:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 15:35:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 15:35:03] Further information can be found at the LHC@home message board.
[2026-03-14 15:35:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 15:35:03] Checking for apptainer binary...
[2026-03-14 15:35:03] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 15:35:03] Running /usr/bin/apptainer --version
[2026-03-14 15:35:03] apptainer version 1.4.1-1.1
[2026-03-14 15:35:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 15:35:03] thA352a
[2026-03-14 15:35:03] apptainer works
[2026-03-14 15:35:03] Set ATHENA_PROC_NUMBER=3
[2026-03-14 15:35:03] Set ATHENA_CORE_NUMBER=3
[2026-03-14 15:35:03] Starting ATLAS job with PandaID=7054069042
[2026-03-14 15:35:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 15:43:18]  *** The last 200 lines of the pilot log: ***
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | INFO     | update_server=False
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 15:43:18] 2026-03-14 14:42:33,288 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:43:18] 2026-03-14 14:42:33,289 | INFO     | aborting loop
[2026-03-14 15:43:18] 2026-03-14 14:42:33,289 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 15:43:18] 2026-03-14 14:42:33,289 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 15:43:18] 2026-03-14 14:42:33,289 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 15:43:18] 2026-03-14 14:42:33,290 | INFO     | all job control threads have been joined
[2026-03-14 15:43:18] 2026-03-14 14:42:33,427 | INFO     | all data control threads have been joined
[2026-03-14 15:43:18] 2026-03-14 14:42:34,050 | INFO     | all payload control threads have been joined
[2026-03-14 15:43:18] 2026-03-14 14:42:34,289 | INFO     | [job] retrieve thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,294 | INFO     | [job] job monitor thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,295 | INFO     | [job] control thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,295 | INFO     | [job] queue monitor thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,333 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,430 | INFO     | [data] control thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,439 | INFO     | [data] copytool_in thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:34,788 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,050 | INFO     | [payload] failed_post thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,056 | INFO     | [payload] control thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,292 | INFO     | [data] copytool_out thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,636 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,720 | INFO     | [job] validate thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,782 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:35,865 | INFO     | [payload] validate_post thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:42:37,295 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 15:43:18] 2026-03-14 14:43:12,873 | INFO     | [monitor] cgroup control has ended
[2026-03-14 15:43:18] 2026-03-14 14:43:13,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139948377163584)>', '<ExcThread(monitor, started 139947734456064)>']
[2026-03-14 15:43:18] 2026-03-14 14:43:13,501 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 15:43:18] 2026-03-14 14:43:13,501 | INFO     | [monitor] control thread has ended
[2026-03-14 15:43:18] 2026-03-14 14:43:18,254 | INFO     | all workflow threads have been joined
[2026-03-14 15:43:18] 2026-03-14 14:43:18,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 15:43:18] 2026-03-14 14:43:18,255 | INFO     | traces error code: 0
[2026-03-14 15:43:18] 2026-03-14 14:43:18,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 15:43:18] 2026-03-14 14:43:18,304 [wrapper] ==== pilot stdout END ====
[2026-03-14 15:43:18] 2026-03-14 14:43:18,307 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 15:43:18] 2026-03-14 14:43:18,309 [wrapper] pilotpid: 74989
[2026-03-14 15:43:18] 2026-03-14 14:43:18,311 [wrapper] Pilot exit status: 0
[2026-03-14 15:43:18] 2026-03-14 14:43:18,318 [wrapper] pandaids: 7054069042
[2026-03-14 15:43:18] 2026-03-14 14:43:18,334 [wrapper] cleanup supervisor_pilot   74995 74990
[2026-03-14 15:43:18] 2026-03-14 14:43:18,336 [wrapper] Test setup, not cleaning
[2026-03-14 15:43:18] 2026-03-14 14:43:18,339 [wrapper] apfmon messages muted
[2026-03-14 15:43:18] 2026-03-14 14:43:18,341 [wrapper] ==== wrapper stdout END ====
[2026-03-14 15:43:18] 2026-03-14 14:43:18,344 [wrapper] ==== wrapper stderr END ====
[2026-03-14 15:43:18]  *** Error codes and diagnostics ***
[2026-03-14 15:43:18]     "exeErrorCode": 65,
[2026-03-14 15:43:18]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-14 15:43:18]     "pilotErrorCode": 1305,
[2026-03-14 15:43:18]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
[2026-03-14 15:43:18]  *** Listing of results directory ***
[2026-03-14 15:43:18] total 210888
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc    585013 Mar 13 23:28 pilot3.tar.gz
[2026-03-14 15:43:18] -rwx------ 1 boinc boinc     36322 Mar 13 23:31 runpilot2-wrapper.sh
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      5111 Mar 13 23:33 queuedata.json
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc       100 Mar 14 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 15:43:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 15:35 run_atlas
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc       105 Mar 14 15:35 job.xml
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc 211647555 Mar 14 15:35 EVNT.48966985._001057.pool.root.1
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc    597543 Mar 14 15:35 input.tar.gz
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc     15845 Mar 14 15:35 start_atlas.sh
[2026-03-14 15:43:18] drwxrwx--x 2 boinc boinc      4096 Mar 14 15:35 shared
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc         0 Mar 14 15:35 boinc_setup_complete
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      6439 Mar 14 15:35 init_data.xml
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc         0 Mar 14 15:35 boinc_lockfile
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      2591 Mar 14 15:35 pandaJob.out
[2026-03-14 15:43:18] -rw------- 1 boinc boinc   1004579 Mar 14 15:35 agis_schedconf.cvmfs.json
[2026-03-14 15:43:18] -rw------- 1 boinc boinc   1511579 Mar 14 15:35 agis_ddmendpoints.agis.ALL.json
[2026-03-14 15:43:18] -rw------- 1 boinc boinc       428 Mar 14 15:35 workernode_map.json
[2026-03-14 15:43:18] drwx------ 5 boinc boinc      4096 Mar 14 15:35 pilot3
[2026-03-14 15:43:18] -rw------- 1 boinc boinc       996 Mar 14 15:40 memory_monitor_summary.json
[2026-03-14 15:43:18] -rw------- 1 boinc boinc     76066 Mar 14 15:40 log.48966988._026479.job.log.tgz.1
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc       525 Mar 14 15:40 boinc_task_state.xml
[2026-03-14 15:43:18] -rw------- 1 boinc boinc        95 Mar 14 15:42 pilot_heartbeat.json
[2026-03-14 15:43:18] -rw------- 1 boinc boinc      8047 Mar 14 15:42 heartbeat.json
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc        23 Mar 14 15:43 wrapper_checkpoint.txt
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      8192 Mar 14 15:43 boinc_mmap_file
[2026-03-14 15:43:18] -rw------- 1 boinc boinc      4552 Mar 14 15:43 pilotlog.txt
[2026-03-14 15:43:18] -rw------- 1 boinc boinc    117446 Mar 14 15:43 log.48966988._026479.job.log.1
[2026-03-14 15:43:18] -rw------- 1 boinc boinc       188 Mar 14 15:43 output.list
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc       620 Mar 14 15:43 runtime_log
[2026-03-14 15:43:18] -rw------- 1 boinc boinc    215040 Mar 14 15:43 result.tar.gz
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      8748 Mar 14 15:43 runtime_log.err
[2026-03-14 15:43:18] -rw------- 1 boinc boinc       650 Mar 14 15:43 jPCNDmEDQL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmERoLDmYC06Ym.diag
[2026-03-14 15:43:18] -rw-r--r-- 1 boinc boinc      7863 Mar 14 15:43 stderr.txt
[2026-03-14 15:43:18] No HITS result produced
[2026-03-14 15:43:18]  *** Contents of shared directory: ***
[2026-03-14 15:43:18] total 207500
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc 211647555 Mar 14 15:35 ATLAS.root_0
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc    597543 Mar 14 15:35 input.tar.gz
[2026-03-14 15:43:18] -rw-r--r-- 2 boinc boinc     15845 Mar 14 15:35 start_atlas.sh
[2026-03-14 15:43:18] -rw------- 1 boinc boinc    215040 Mar 14 15:43 result.tar.gz
15:43:20 (70949): run_atlas exited; CPU time 87.113981
15:43:20 (70949): called boinc_finish(0)

</stderr_txt>
]]>

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