Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:20:19 (1308246): wrapper (7.7.26015): starting
13:20:19 (1308246): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 13:20:19] Arguments: --nthreads 12
[2026-03-14 13:20:19] Threads: 12
[2026-03-14 13:20:19] Checking for CVMFS
[2026-03-14 13:20:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 13:20:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 13:20:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 13:20:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 13:20:21] 2.13.3.0 9230 185728 333184 157285 3 57 32495334 32503809 24216 16776704 0 877625727 99.725 624202167 33076 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-14 13:20:21] CVMFS is ok
[2026-03-14 13:20:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 13:20:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 13:20:21] Further information can be found at the LHC@home message board.
[2026-03-14 13:20:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 13:20:21] Checking for apptainer binary...
[2026-03-14 13:20:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 13:20:21] Running /usr/bin/apptainer --version
[2026-03-14 13:20:21] apptainer version 1.4.5-2.el9
[2026-03-14 13:20:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 13:20:22] c-4-35.aglt2.org
[2026-03-14 13:20:22] apptainer works
[2026-03-14 13:20:22] Set ATHENA_PROC_NUMBER=12
[2026-03-14 13:20:22] Set ATHENA_CORE_NUMBER=12
[2026-03-14 13:20:22] Starting ATLAS job with PandaID=7045264663
[2026-03-14 13:20:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
21:27:10 (2420617): wrapper (7.7.26015): starting
21:27:10 (2420617): wrapper: running run_atlas (--nthreads 12)
[2026-03-14 21:27:10] Arguments: --nthreads 12
[2026-03-14 21:27:10] Threads: 12
[2026-03-14 21:27:10] This job has been restarted, cleaning up previous attempt
[2026-03-14 21:27:11] Checking for CVMFS
[2026-03-14 21:27:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 21:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 21:27:12] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 21:27:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 21:27:13] 2.13.3.0 9230 186215 333844 157297 1 19 20463992 32503808 24332 16776704 0 877930234 99.724 625200948 33081 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-03-14 21:27:13] CVMFS is ok
[2026-03-14 21:27:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 21:27:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 21:27:13] Further information can be found at the LHC@home message board.
[2026-03-14 21:27:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 21:27:13] Checking for apptainer binary...
[2026-03-14 21:27:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 21:27:13] Running /usr/bin/apptainer --version
[2026-03-14 21:27:13] apptainer version 1.4.5-2.el9
[2026-03-14 21:27:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 21:27:14] c-4-35.aglt2.org
[2026-03-14 21:27:14] apptainer works
[2026-03-14 21:27:14] Set ATHENA_PROC_NUMBER=12
[2026-03-14 21:27:14] Set ATHENA_CORE_NUMBER=12
[2026-03-14 21:27:14] Starting ATLAS job with PandaID=7045264663
[2026-03-14 21:27:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 14:01:49]  *** The last 200 lines of the pilot log: ***
[2026-03-15 14:01:49] 2026-03-15 18:00:46,870 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-03-15 14:01:49] 2026-03-15 18:00:46,871 | INFO     | this job has now completed (state=finished)
[2026-03-15 14:01:49] 2026-03-15 18:00:46,871 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 14:01:49] 2026-03-15 18:00:46,871 | INFO     | log transfer has been attempted: DONE
[2026-03-15 14:01:49] 2026-03-15 18:00:46,871 | INFO     | job 7045264663 has finished - writing final server update
[2026-03-15 14:01:49] 2026-03-15 18:00:46,871 | INFO     | total number of processed events: 400 (read)
[2026-03-15 14:01:49] 2026-03-15 18:00:46,885 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7045264663/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 14:01:49] 2026-03-15 18:00:46,886 | INFO     | extracted standard info from prmon json
[2026-03-15 14:01:49] 2026-03-15 18:00:46,886 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 14:01:49] 2026-03-15 18:00:46,886 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 14:01:49] 2026-03-15 18:00:46,891 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 14:01:49] 2026-03-15 18:00:46,891 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 14:01:49] 2026-03-15 18:00:47,017 | INFO     | fitting pss+swap vs Time
[2026-03-15 14:01:49] 2026-03-15 18:00:47,018 | INFO     | sum of square deviations: 288287777080.2038
[2026-03-15 14:01:49] 2026-03-15 18:00:47,211 | INFO     | sum of deviations: -129062415510.26321
[2026-03-15 14:01:49] 2026-03-15 18:00:47,211 | INFO     | mean x: 1773567859.7674181
[2026-03-15 14:01:49] 2026-03-15 18:00:47,211 | INFO     | mean y: 2690478.6772540985
[2026-03-15 14:01:49] 2026-03-15 18:00:47,211 | INFO     | intersect: 796692064.0766546
[2026-03-15 14:01:49] 2026-03-15 18:00:47,225 | INFO     | chi2: 3.111125586990832
[2026-03-15 14:01:49] 2026-03-15 18:00:47,226 | INFO     | sum of square deviations: 283879669967.4481
[2026-03-15 14:01:49] 2026-03-15 18:00:47,350 | INFO     | sum of deviations: -65227237550.308174
[2026-03-15 14:01:49] 2026-03-15 18:00:47,350 | INFO     | mean x: 1773567707.2657053
[2026-03-15 14:01:49] 2026-03-15 18:00:47,350 | INFO     | mean y: 2692677.7415036047
[2026-03-15 14:01:49] 2026-03-15 18:00:47,350 | INFO     | intersect: 410206615.48364955
[2026-03-15 14:01:49] 2026-03-15 18:00:47,369 | INFO     | chi2: 2.4004002484438374
[2026-03-15 14:01:49] 2026-03-15 18:00:47,369 | INFO     | current chi2=2.4004002484438374 (change=22.844636729513322 %)
[2026-03-15 14:01:49] 2026-03-15 18:00:47,369 | INFO     | right removable region: 970
[2026-03-15 14:01:49] 2026-03-15 18:00:47,370 | INFO     | sum of square deviations: 283879689244.8471
[2026-03-15 14:01:49] 2026-03-15 18:00:47,577 | INFO     | sum of deviations: -331734521843.3936
[2026-03-15 14:01:49] 2026-03-15 18:00:47,577 | INFO     | mean x: 1773568012.268795
[2026-03-15 14:01:49] 2026-03-15 18:00:47,578 | INFO     | mean y: 2697478.7064881567
[2026-03-15 14:01:49] 2026-03-15 18:00:47,578 | INFO     | intersect: 2075243556.4897068
[2026-03-15 14:01:49] 2026-03-15 18:00:47,579 | INFO     | chi2: 1.3433872476079838
[2026-03-15 14:01:49] 2026-03-15 18:00:47,579 | INFO     | current chi2=1.3433872476079838 (change=56.81989652795259 %)
[2026-03-15 14:01:49] 2026-03-15 18:00:47,606 | INFO     | sum of square deviations: 279516765046.9807
[2026-03-15 14:01:49] 2026-03-15 18:00:47,796 | INFO     | sum of deviations: -364160334818.3671
[2026-03-15 14:01:49] 2026-03-15 18:00:47,804 | INFO     | mean x: 1773568164.7701864
[2026-03-15 14:01:49] 2026-03-15 18:00:47,804 | INFO     | mean y: 2698610.480331263
[2026-03-15 14:01:49] 2026-03-15 18:00:47,804 | INFO     | intersect: 2313340609.3506045
[2026-03-15 14:01:49] 2026-03-15 18:00:47,806 | INFO     | chi2: 1.2906987914523231
[2026-03-15 14:01:49] 2026-03-15 18:00:47,806 | INFO     | current chi2=1.2906987914523231 (change=3.922060169134176 %)
[2026-03-15 14:01:49] 2026-03-15 18:00:47,806 | INFO     | left removable region: 20
[2026-03-15 14:01:49] 2026-03-15 18:00:47,809 | INFO     | sum of square deviations: 265856507633.18314
[2026-03-15 14:01:49] 2026-03-15 18:00:47,820 | INFO     | monitor loop #3534: job 0:7045264663 is in state 'finished'
[2026-03-15 14:01:49] 2026-03-15 18:00:47,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 14:01:49] 2026-03-15 18:00:47,973 | INFO     | sum of deviations: -223371170979.31174
[2026-03-15 14:01:49] 2026-03-15 18:00:47,974 | INFO     | mean x: 1773568286.7642105
[2026-03-15 14:01:49] 2026-03-15 18:00:48,021 | INFO     | mean y: 2698124.337894737
[2026-03-15 14:01:49] 2026-03-15 18:00:48,021 | INFO     | intersect: 1492840414.0760221
[2026-03-15 14:01:49] 2026-03-15 18:00:48,023 | INFO     | chi2: 0.482634471807229
[2026-03-15 14:01:49] 2026-03-15 18:00:48,023 | INFO     | current memory leak: -0.84 B/s (using 950 data points, chi2=0.48)
[2026-03-15 14:01:49] 2026-03-15 18:00:48,024 | INFO     | could have reported an average CPU frequency of 2600 MHz (36 samples)
[2026-03-15 14:01:49] 2026-03-15 18:00:48,024 | INFO     | ..............................
[2026-03-15 14:01:49] 2026-03-15 18:00:48,024 | INFO     | . Timing measurements:
[2026-03-15 14:01:49] 2026-03-15 18:00:48,025 | INFO     | . get job = 0 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,025 | INFO     | . initial setup = 3 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,025 | INFO     | . payload setup = 24 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,040 | INFO     | . stage-in = 0 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,040 | INFO     | . payload execution = 59529 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,041 | INFO     | . stage-out = 9 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,041 | INFO     | . log creation = 2 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,041 | INFO     | ..............................
[2026-03-15 14:01:49] 2026-03-15 18:00:47,999 | INFO     | time since job start (59575s) is within the limit (345600.0s)
[2026-03-15 14:01:49] 2026-03-15 18:00:48,827 | INFO     | 
[2026-03-15 14:01:49] 2026-03-15 18:00:48,827 | INFO     | job summary report
[2026-03-15 14:01:49] 2026-03-15 18:00:48,827 | INFO     | --------------------------------------------------
[2026-03-15 14:01:49] 2026-03-15 18:00:48,827 | INFO     | PanDA job id: 7045264663
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | task id: 48955010
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | errors: (none)
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | pilot state: finished 
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | transexitcode: 0
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | exeerrorcode: 0
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | exeerrordiag: 
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | exitcode: 0
[2026-03-15 14:01:49] 2026-03-15 18:00:48,828 | INFO     | exitmsg: OK
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | cpuconsumptiontime: 43963 s
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | nevents: 400
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | neventsw: 0
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | pid: 2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | pgrp: 2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | corecount: 12
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | event service: False
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | sizes: {0: 2279748, 1: 2279776, 2: 2280237, 59556: 2331464, 59558: 2331463, 59568: 2340517, 59571: 2340701, 59574: 2340895}
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | --------------------------------------------------
[2026-03-15 14:01:49] 2026-03-15 18:00:48,829 | INFO     | 
[2026-03-15 14:01:49] 2026-03-15 18:00:48,830 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-03-15 14:01:49] 2026-03-15 18:00:49,099 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,100 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,101 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | job 7045264663 has completed (purged errors)
[2026-03-15 14:01:49] 2026-03-15 18:00:49,102 | INFO     | overall cleanup function is called
[2026-03-15 14:01:49] 2026-03-15 18:00:50,147 | INFO     | --- collectZombieJob: --- 10, [2428365]
[2026-03-15 14:01:49] 2026-03-15 18:00:50,147 | INFO     | zombie collector waiting for pid 2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:50,147 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 14:01:49] 2026-03-15 18:00:50,147 | INFO     | collected zombie processes
[2026-03-15 14:01:49] 2026-03-15 18:00:50,147 | INFO     | will attempt to kill all subprocesses of pid=2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:51,721 | INFO     | process IDs to be killed: [2428365] (in reverse order)
[2026-03-15 14:01:49] 2026-03-15 18:00:51,874 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 14:01:49] 2026-03-15 18:00:51,875 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 14:01:49] 2026-03-15 18:00:51,990 | INFO     | did not find any defunct processes belonging to 2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:52,032 | INFO     | did not find any defunct processes belonging to 2428365
[2026-03-15 14:01:49] 2026-03-15 18:00:52,033 | INFO     | ready for new job
[2026-03-15 14:01:49] 2026-03-15 18:00:52,033 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 14:01:49] 2026-03-15 18:00:52,037 | INFO     | **************************************
[2026-03-15 14:01:49] 2026-03-15 18:00:52,037 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 14:01:49] 2026-03-15 18:00:52,037 | INFO     | **************************************
[2026-03-15 14:01:49] 2026-03-15 18:00:52,037 | INFO     | 
[2026-03-15 14:01:49] 2026-03-15 18:00:52,039 | INFO     | architecture information:
[2026-03-15 14:01:49] 2026-03-15 18:00:52,039 | INFO     | executing command: cat /etc/os-release
[2026-03-15 14:01:49] 2026-03-15 18:00:52,118 | INFO     | cat /etc/os-release:
[2026-03-15 14:01:49] NAME="CentOS Linux"
[2026-03-15 14:01:49] VERSION="7 (Core)"
[2026-03-15 14:01:49] ID="centos"
[2026-03-15 14:01:49] ID_LIKE="rhel fedora"
[2026-03-15 14:01:49] VERSION_ID="7"
[2026-03-15 14:01:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 14:01:49] ANSI_COLOR="0;31"
[2026-03-15 14:01:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 14:01:49] HOME_URL="https://www.centos.org/"
[2026-03-15 14:01:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 14:01:49] 
[2026-03-15 14:01:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 14:01:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 14:01:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 14:01:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 14:01:49] 
[2026-03-15 14:01:49] 2026-03-15 18:00:52,119 | INFO     | **************************************
[2026-03-15 14:01:49] 2026-03-15 18:00:52,622 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-03-15 14:01:49] 2026-03-15 18:00:52,761 | INFO     | sufficient remaining disk space (95199166464 B)
[2026-03-15 14:01:49] 2026-03-15 18:00:52,762 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 14:01:49] 2026-03-15 18:00:52,762 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 14:01:49] 2026-03-15 18:00:52,762 | INFO     | update_server=False
[2026-03-15 14:01:49] 2026-03-15 18:00:52,762 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 14:01:49] 2026-03-15 18:00:52,763 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 14:01:49] 2026-03-15 18:00:52,881 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-15 14:01:49] 2026-03-15 18:00:52,888 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-15 14:01:49] 2026-03-15 18:00:52,888 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:01:49] 2026-03-15 18:00:52,888 | INFO     | will abort loop
[2026-03-15 14:01:49] 2026-03-15 18:00:53,518 | INFO     | all data control threads have been joined
[2026-03-15 14:01:49] 2026-03-15 18:00:53,731 | INFO     | all payload control threads have been joined
[2026-03-15 14:01:49] 2026-03-15 18:00:53,800 | INFO     | [job] retrieve thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:53,847 | INFO     | [payload] failed_post thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:53,881 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 14:01:49] 2026-03-15 18:00:53,927 | INFO     | [job] job monitor thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:53,941 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 14:01:49] 2026-03-15 18:00:54,137 | INFO     | all job control threads have been joined
[2026-03-15 14:01:49] 2026-03-15 18:00:54,386 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,524 | INFO     | [data] control thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,538 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,558 | INFO     | [data] copytool_in thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,567 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,571 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,577 | INFO     | [job] validate thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,627 | INFO     | [payload] validate_post thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,746 | INFO     | [payload] control thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:54,905 | INFO     | [job] queue monitor thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:55,155 | INFO     | [job] control thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:55,963 | INFO     | [data] copytool_out thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:00:56,785 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 14:01:49] 2026-03-15 18:01:21,999 | INFO     | PID=2425712 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 14:01:49] 2026-03-15 18:01:22,000 | INFO     | .. there are 42 such processes running
[2026-03-15 14:01:49] 2026-03-15 18:01:22,000 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 14:01:49] 2026-03-15 18:01:22,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 14:01:49] 2026-03-15 18:01:22,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 14:01:49] 2026-03-15 18:01:39,924 | INFO     | [monitor] cgroup control has ended
[2026-03-15 14:01:49] 2026-03-15 18:01:41,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139784172992320)>', '<ExcThread(monitor, started 139783821039360)>']
[2026-03-15 14:01:49] 2026-03-15 18:01:42,201 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 14:01:49] 2026-03-15 18:01:42,201 | INFO     | [monitor] control thread has ended
[2026-03-15 14:01:49] 2026-03-15 18:01:46,521 | INFO     | all workflow threads have been joined
[2026-03-15 14:01:49] 2026-03-15 18:01:46,521 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 14:01:49] 2026-03-15 18:01:46,521 | INFO     | traces error code: 0
[2026-03-15 14:01:49] 2026-03-15 18:01:46,522 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 14:01:49] 2026-03-15 18:01:47,881 [wrapper] ==== pilot stdout END ====
[2026-03-15 14:01:49] 2026-03-15 18:01:47,891 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 14:01:49] 2026-03-15 18:01:47,925 [wrapper] pilotpid: 2425712
[2026-03-15 14:01:49] 2026-03-15 18:01:47,931 [wrapper] Pilot exit status: 0
[2026-03-15 14:01:49] 2026-03-15 18:01:48,024 [wrapper] pandaids: 7045264663 7045264663
[2026-03-15 14:01:49] 2026-03-15 18:01:48,832 [wrapper] cleanup supervisor_pilot  523290 2425713
[2026-03-15 14:01:49] 2026-03-15 18:01:48,869 [wrapper] Test setup, not cleaning
[2026-03-15 14:01:49] 2026-03-15 18:01:48,910 [wrapper] apfmon messages muted
[2026-03-15 14:01:49] 2026-03-15 18:01:48,943 [wrapper] ==== wrapper stdout END ====
[2026-03-15 14:01:49] 2026-03-15 18:01:49,001 [wrapper] ==== wrapper stderr END ====
[2026-03-15 14:01:49]  *** Error codes and diagnostics ***
[2026-03-15 14:01:49]     "exeErrorCode": 0,
[2026-03-15 14:01:49]     "exeErrorDiag": "",
[2026-03-15 14:01:49]     "pilotErrorCode": 0,
[2026-03-15 14:01:49]     "pilotErrorDiag": "",
[2026-03-15 14:01:49]  *** Listing of results directory ***
[2026-03-15 14:01:50] total 1061944
[2026-03-15 14:01:50] drwx------. 5 boincer umatlas      4096 Mar 10 12:00 pilot3
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas    585013 Mar 13 19:38 pilot3.tar.gz
[2026-03-15 14:01:50] -rwx------. 1 boincer umatlas     36322 Mar 13 19:38 runpilot2-wrapper.sh
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas      5111 Mar 13 19:38 queuedata.json
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas       100 Mar 14 13:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 14:01:50] -rwxr-xr-x. 1 boincer umatlas      7986 Mar 14 13:20 run_atlas
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas       105 Mar 14 13:20 job.xml
[2026-03-15 14:01:50] -rw-r--r--. 3 boincer umatlas 442108019 Mar 14 13:20 EVNT.46701403._001694.pool.root.1
[2026-03-15 14:01:50] -rw-r--r--. 3 boincer umatlas 442108019 Mar 14 13:20 ATLAS.root_0
[2026-03-15 14:01:50] -rw-r--r--. 2 boincer umatlas     15845 Mar 14 13:20 start_atlas.sh
[2026-03-15 14:01:50] drwxrwx--x. 2 boincer umatlas      4096 Mar 14 13:20 shared
[2026-03-15 14:01:50] -rw-r--r--. 2 boincer umatlas    597527 Mar 14 13:20 input.tar.gz
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas         0 Mar 14 13:20 boinc_lockfile
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas      2564 Mar 14 21:27 pandaJob.out
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas        57 Mar 14 21:27 setup.sh.local
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   1006481 Mar 14 21:27 agis_schedconf.cvmfs.json
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas       430 Mar 14 21:27 workernode_map.json
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas      6660 Mar 15 12:21 init_data.xml
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas 182468183 Mar 15 13:58 HITS.48955010._034981.pool.root.1
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas       531 Mar 15 13:59 boinc_task_state.xml
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas      1050 Mar 15 14:00 memory_monitor_summary.json
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas        96 Mar 15 14:00 pilot_heartbeat.json
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   1511579 Mar 15 14:00 agis_ddmendpoints.agis.ALL.json
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   1113343 Mar 15 14:00 log.48955010._034981.job.log.tgz.1
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas      6400 Mar 15 14:00 heartbeat.json
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas      5006 Mar 15 14:01 pilotlog.txt
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   7290007 Mar 15 14:01 log.48955010._034981.job.log.1
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas        28 Mar 15 14:01 wrapper_checkpoint.txt
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas      8192 Mar 15 14:01 boinc_mmap_file
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas       357 Mar 15 14:01 output.list
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas       620 Mar 15 14:01 runtime_log
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   8417280 Mar 15 14:01 result.tar.gz
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas      9419 Mar 15 14:01 runtime_log.err
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas       784 Mar 15 14:01 imIODmRGRL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmxWoLDm73covm.diag
[2026-03-15 14:01:50] -rw-r--r--. 1 boincer umatlas     23523 Mar 15 14:01 stderr.txt
[2026-03-15 14:01:50] HITS file was successfully produced:
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas 182468183 Mar 15 13:58 shared/HITS.pool.root.1
[2026-03-15 14:01:50]  *** Contents of shared directory: ***
[2026-03-15 14:01:50] total 618768
[2026-03-15 14:01:50] -rw-r--r--. 3 boincer umatlas 442108019 Mar 14 13:20 ATLAS.root_0
[2026-03-15 14:01:50] -rw-r--r--. 2 boincer umatlas     15845 Mar 14 13:20 start_atlas.sh
[2026-03-15 14:01:50] -rw-r--r--. 2 boincer umatlas    597527 Mar 14 13:20 input.tar.gz
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas 182468183 Mar 15 13:58 HITS.pool.root.1
[2026-03-15 14:01:50] -rw-------. 1 boincer umatlas   8417280 Mar 15 14:01 result.tar.gz
14:01:51 (2420617): run_atlas exited; CPU time 47250.137180
14:01:51 (2420617): called boinc_finish(0)

</stderr_txt>
]]>

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