Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:03:55 (858560): wrapper (7.7.26015): starting
14:03:55 (858560): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 14:03:55] Arguments: --nthreads 3
[2026-03-14 14:03:55] Threads: 3
[2026-03-14 14:03:55] Checking for CVMFS
[2026-03-14 14:03:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 14:03:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 14:03:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 14:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 14:03:55] 2.9.2.0 5444 5490 83080 157278 2 50 32750265 36864001 0 130560 0 2399805 99.984 210782 15334 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 14:03:55] CVMFS is ok
[2026-03-14 14:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 14:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 14:03:55] Further information can be found at the LHC@home message board.
[2026-03-14 14:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 14:03:55] Checking for apptainer binary...
[2026-03-14 14:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 14:03:55] Running /usr/bin/apptainer --version
[2026-03-14 14:03:55] apptainer version 1.4.1-1.1
[2026-03-14 14:03:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 14:03:55] magicA161a
[2026-03-14 14:03:55] apptainer works
[2026-03-14 14:03:55] Set ATHENA_PROC_NUMBER=3
[2026-03-14 14:03:55] Set ATHENA_CORE_NUMBER=3
[2026-03-14 14:03:55] Starting ATLAS job with PandaID=7054068340
[2026-03-14 14:03:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 15:39:18]  *** The last 200 lines of the pilot log: ***
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | job 7054068340 has completed (purged errors)
[2026-03-14 15:39:18] 2026-03-14 14:38:43,631 | INFO     | overall cleanup function is called
[2026-03-14 15:39:18] 2026-03-14 14:38:44,456 | WARNING  | process 867023 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 15:39:18] 2026-03-14 14:38:44,485 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 15:39:18] 2026-03-14 14:38:44,520 | INFO     | number of running child processes to parent process 867023: 1
[2026-03-14 15:39:18] 2026-03-14 14:38:44,520 | INFO     | maximum number of monitored processes: 6
[2026-03-14 15:39:18] 2026-03-14 14:38:44,520 | INFO     | aborting job monitoring since job object (job id=7054068340) has expired
[2026-03-14 15:39:18] 2026-03-14 14:38:44,638 | INFO     | --- collectZombieJob: --- 10, [867023]
[2026-03-14 15:39:18] 2026-03-14 14:38:44,638 | INFO     | zombie collector waiting for pid 867023
[2026-03-14 15:39:18] 2026-03-14 14:38:44,638 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 15:39:18] 2026-03-14 14:38:44,638 | INFO     | collected zombie processes
[2026-03-14 15:39:18] 2026-03-14 14:38:44,638 | INFO     | will attempt to kill all subprocesses of pid=867023
[2026-03-14 15:39:18] 2026-03-14 14:38:44,678 | INFO     | process IDs to be killed: [867023] (in reverse order)
[2026-03-14 15:39:18] 2026-03-14 14:38:44,702 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 15:39:18] 2026-03-14 14:38:44,702 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 15:39:18] 2026-03-14 14:38:44,704 | INFO     | did not find any defunct processes belonging to 867023
[2026-03-14 15:39:18] 2026-03-14 14:38:44,705 | INFO     | did not find any defunct processes belonging to 867023
[2026-03-14 15:39:18] 2026-03-14 14:38:44,705 | INFO     | ready for new job
[2026-03-14 15:39:18] 2026-03-14 14:38:44,705 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 15:39:18] 2026-03-14 14:38:44,705 | INFO     | **************************************
[2026-03-14 15:39:18] 2026-03-14 14:38:44,706 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 15:39:18] 2026-03-14 14:38:44,706 | INFO     | **************************************
[2026-03-14 15:39:18] 2026-03-14 14:38:44,706 | INFO     | 
[2026-03-14 15:39:18] 2026-03-14 14:38:44,706 | INFO     | architecture information:
[2026-03-14 15:39:18] 2026-03-14 14:38:44,706 | INFO     | executing command: cat /etc/os-release
[2026-03-14 15:39:18] 2026-03-14 14:38:44,715 | INFO     | cat /etc/os-release:
[2026-03-14 15:39:18] NAME="CentOS Linux"
[2026-03-14 15:39:18] VERSION="7 (Core)"
[2026-03-14 15:39:18] ID="centos"
[2026-03-14 15:39:18] ID_LIKE="rhel fedora"
[2026-03-14 15:39:18] VERSION_ID="7"
[2026-03-14 15:39:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 15:39:18] ANSI_COLOR="0;31"
[2026-03-14 15:39:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 15:39:18] HOME_URL="https://www.centos.org/"
[2026-03-14 15:39:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 15:39:18] 
[2026-03-14 15:39:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 15:39:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 15:39:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 15:39:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 15:39:18] 
[2026-03-14 15:39:18] 2026-03-14 14:38:44,715 | INFO     | **************************************
[2026-03-14 15:39:18] 2026-03-14 14:38:45,218 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 15:39:18] 2026-03-14 14:38:45,231 | INFO     | sufficient remaining disk space (370307760128 B)
[2026-03-14 15:39:18] 2026-03-14 14:38:45,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 15:39:18] 2026-03-14 14:38:45,231 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 15:39:18] 2026-03-14 14:38:45,231 | INFO     | update_server=False
[2026-03-14 15:39:18] 2026-03-14 14:38:45,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 15:39:18] 2026-03-14 14:38:45,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:39:18] 2026-03-14 14:38:45,232 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 15:39:18] 2026-03-14 14:38:45,232 | INFO     | will abort loop
[2026-03-14 15:39:18] 2026-03-14 14:38:45,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 15:39:18] 2026-03-14 14:38:45,714 | INFO     | all data control threads have been joined
[2026-03-14 15:39:18] 2026-03-14 14:38:45,766 | INFO     | all payload control threads have been joined
[2026-03-14 15:39:18] 2026-03-14 14:38:46,237 | INFO     | [job] queue monitor thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,237 | INFO     | [job] retrieve thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,237 | INFO     | [job] job monitor thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,258 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,260 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,388 | INFO     | [data] copytool_in thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,412 | INFO     | [payload] validate_post thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,720 | INFO     | [data] control thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,732 | INFO     | all job control threads have been joined
[2026-03-14 15:39:18] 2026-03-14 14:38:46,772 | INFO     | [payload] control thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:46,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 15:39:18] 2026-03-14 14:38:47,209 | INFO     | [payload] failed_post thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:47,486 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:47,631 | INFO     | [job] validate thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:47,692 | INFO     | [data] copytool_out thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:47,733 | INFO     | [job] control thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:50,938 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:38:55,403 | INFO     | job.realtimelogging is not enabled
[2026-03-14 15:39:18] 2026-03-14 14:38:56,409 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 15:39:18] 2026-03-14 14:39:13,481 | INFO     | [monitor] cgroup control has ended
[2026-03-14 15:39:18] 2026-03-14 14:39:13,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140252131927872)>', '<ExcThread(monitor, started 140251787933440)>']
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | INFO     | PID=862598 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 15:39:18] 2026-03-14 14:39:16,140 | INFO     | [monitor] control thread has ended
[2026-03-14 15:39:18] 2026-03-14 14:39:18,693 | INFO     | all workflow threads have been joined
[2026-03-14 15:39:18] 2026-03-14 14:39:18,693 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 15:39:18] 2026-03-14 14:39:18,693 | INFO     | traces error code: 0
[2026-03-14 15:39:18] 2026-03-14 14:39:18,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 15:39:18] 2026-03-14 14:39:18,741 [wrapper] ==== pilot stdout END ====
[2026-03-14 15:39:18] 2026-03-14 14:39:18,744 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 15:39:18] 2026-03-14 14:39:18,746 [wrapper] pilotpid: 862598
[2026-03-14 15:39:18] 2026-03-14 14:39:18,748 [wrapper] Pilot exit status: 0
[2026-03-14 15:39:18] 2026-03-14 14:39:18,756 [wrapper] pandaids: 7054068340
[2026-03-14 15:39:18] 2026-03-14 14:39:18,771 [wrapper] cleanup supervisor_pilot  872415 862599
[2026-03-14 15:39:18] 2026-03-14 14:39:18,774 [wrapper] Test setup, not cleaning
[2026-03-14 15:39:18] 2026-03-14 14:39:18,776 [wrapper] apfmon messages muted
[2026-03-14 15:39:18] 2026-03-14 14:39:18,778 [wrapper] ==== wrapper stdout END ====
[2026-03-14 15:39:18] 2026-03-14 14:39:18,780 [wrapper] ==== wrapper stderr END ====
[2026-03-14 15:39:18]  *** Error codes and diagnostics ***
[2026-03-14 15:39:18]     "exeErrorCode": 0,
[2026-03-14 15:39:18]     "exeErrorDiag": "",
[2026-03-14 15:39:18]     "pilotErrorCode": 0,
[2026-03-14 15:39:18]     "pilotErrorDiag": "",
[2026-03-14 15:39:18]  *** Listing of results directory ***
[2026-03-14 15:39:18] total 402812
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc    585013 Mar 13 23:28 pilot3.tar.gz
[2026-03-14 15:39:18] -rwx------ 1 boinc boinc     36322 Mar 13 23:30 runpilot2-wrapper.sh
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc      5111 Mar 13 23:33 queuedata.json
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc       100 Mar 14 14:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 15:39:18] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 14:03 run_atlas
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc       105 Mar 14 14:03 job.xml
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc 210805888 Mar 14 14:03 EVNT.48966985._001051.pool.root.1
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc    597544 Mar 14 14:03 input.tar.gz
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc     15845 Mar 14 14:03 start_atlas.sh
[2026-03-14 15:39:18] drwxrwx--x 2 boinc boinc      4096 Mar 14 14:03 shared
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc         0 Mar 14 14:03 boinc_setup_complete
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc      6449 Mar 14 14:03 init_data.xml
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc         0 Mar 14 14:03 boinc_lockfile
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc      2591 Mar 14 14:03 pandaJob.out
[2026-03-14 15:39:18] -rw------- 1 boinc boinc   1004579 Mar 14 14:04 agis_schedconf.cvmfs.json
[2026-03-14 15:39:18] -rw------- 1 boinc boinc   1511579 Mar 14 14:04 agis_ddmendpoints.agis.ALL.json
[2026-03-14 15:39:18] -rw------- 1 boinc boinc       419 Mar 14 14:04 workernode_map.json
[2026-03-14 15:39:18] drwx------ 5 boinc boinc      4096 Mar 14 14:04 pilot3
[2026-03-14 15:39:18] -rw------- 1 boinc boinc 195572323 Mar 14 15:38 HITS.48966988._026330.pool.root.1
[2026-03-14 15:39:18] -rw------- 1 boinc boinc        95 Mar 14 15:38 pilot_heartbeat.json
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc       529 Mar 14 15:38 boinc_task_state.xml
[2026-03-14 15:39:18] -rw------- 1 boinc boinc      1017 Mar 14 15:38 memory_monitor_summary.json
[2026-03-14 15:39:18] -rw------- 1 boinc boinc    259541 Mar 14 15:38 log.48966988._026330.job.log.tgz.1
[2026-03-14 15:39:18] -rw------- 1 boinc boinc      6296 Mar 14 15:38 heartbeat.json
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc      8192 Mar 14 15:39 boinc_mmap_file
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc        27 Mar 14 15:39 wrapper_checkpoint.txt
[2026-03-14 15:39:18] -rw------- 1 boinc boinc      4821 Mar 14 15:39 pilotlog.txt
[2026-03-14 15:39:18] -rw------- 1 boinc boinc    825921 Mar 14 15:39 log.48966988._026330.job.log.1
[2026-03-14 15:39:18] -rw------- 1 boinc boinc       357 Mar 14 15:39 output.list
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc       620 Mar 14 15:39 runtime_log
[2026-03-14 15:39:18] -rw------- 1 boinc boinc   1105920 Mar 14 15:39 result.tar.gz
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc      8916 Mar 14 15:39 runtime_log.err
[2026-03-14 15:39:18] -rw------- 1 boinc boinc       661 Mar 14 15:39 CKmNDm7CQL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm25qLDmXUIhHn.diag
[2026-03-14 15:39:18] -rw-r--r-- 1 boinc boinc     12749 Mar 14 15:39 stderr.txt
[2026-03-14 15:39:18] HITS file was successfully produced:
[2026-03-14 15:39:18] -rw------- 1 boinc boinc 195572323 Mar 14 15:38 shared/HITS.pool.root.1
[2026-03-14 15:39:18]  *** Contents of shared directory: ***
[2026-03-14 15:39:18] total 398544
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc 210805888 Mar 14 14:03 ATLAS.root_0
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc    597544 Mar 14 14:03 input.tar.gz
[2026-03-14 15:39:18] -rw-r--r-- 2 boinc boinc     15845 Mar 14 14:03 start_atlas.sh
[2026-03-14 15:39:18] -rw------- 1 boinc boinc 195572323 Mar 14 15:38 HITS.pool.root.1
[2026-03-14 15:39:18] -rw------- 1 boinc boinc   1105920 Mar 14 15:39 result.tar.gz
15:39:21 (858560): run_atlas exited; CPU time 16031.324595
15:39:21 (858560): called boinc_finish(0)

</stderr_txt>
]]>

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