Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:47:31 (31516): wrapper (7.7.26015): starting
08:47:31 (31516): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 08:47:31] Arguments: --nthreads 8
[2026-03-14 08:47:31] Threads: 8
[2026-03-14 08:47:31] Checking for CVMFS
[2026-03-14 08:47:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 08:47:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 08:47:32] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 08:47:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 08:47:32] 2.11.2.0 13009 127293 130108 157270 1 54 20253971 25165824 598 130560 163 41413868 99.827 28977702 993 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 08:47:32] CVMFS is ok
[2026-03-14 08:47:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 08:47:32] Checking for apptainer binary...
[2026-03-14 08:47:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 08:47:32] Running /usr/bin/apptainer --version
[2026-03-14 08:47:32] apptainer version 1.3.2-1.el7
[2026-03-14 08:47:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 08:47:34] cg-vwn438.simple-grid.lan
[2026-03-14 08:47:34] apptainer works
[2026-03-14 08:47:34] Set ATHENA_PROC_NUMBER=8
[2026-03-14 08:47:34] Set ATHENA_CORE_NUMBER=8
[2026-03-14 08:47:34] Starting ATLAS job with PandaID=7054059799
[2026-03-14 08:47:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 11:41:25]  *** The last 200 lines of the pilot log: ***
[2026-03-14 11:41:25] 2026-03-14 10:40:35,204 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 11:41:25] 2026-03-14 10:40:35,204 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 11:41:25] 2026-03-14 10:40:35,205 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 11:41:25] 2026-03-14 10:40:35,205 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 11:41:25] 2026-03-14 10:40:35,209 | INFO     | fitting pss+swap vs Time
[2026-03-14 11:41:25] 2026-03-14 10:40:35,210 | INFO     | sum of square deviations: 1523386702.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,216 | INFO     | sum of deviations: -2614430750.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,217 | INFO     | mean x: 1773479657.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,217 | INFO     | mean y: 2489622.9823529413
[2026-03-14 11:41:25] 2026-03-14 10:40:35,217 | INFO     | intersect: 3046128998.555941
[2026-03-14 11:41:25] 2026-03-14 10:40:35,218 | INFO     | chi2: 2.3812429320964537
[2026-03-14 11:41:25] 2026-03-14 10:40:35,218 | INFO     | sum of square deviations: 1392881930.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,219 | INFO     | sum of deviations: 8643961446.000006
[2026-03-14 11:41:25] 2026-03-14 10:40:35,220 | INFO     | mean x: 1773479505.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,220 | INFO     | mean y: 2502466.6787878787
[2026-03-14 11:41:25] 2026-03-14 10:40:35,220 | INFO     | intersect: -11003375444.660889
[2026-03-14 11:41:25] 2026-03-14 10:40:35,220 | INFO     | chi2: 1.6181543801287586
[2026-03-14 11:41:25] 2026-03-14 10:40:35,221 | INFO     | current chi2=1.6181543801287586 (change=32.04580858517739 %)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,221 | INFO     | sum of square deviations: 1270051720.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,222 | INFO     | sum of deviations: 8483603944.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,222 | INFO     | mean x: 1773479352.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,222 | INFO     | mean y: 2502267.53125
[2026-03-14 11:41:25] 2026-03-14 10:40:35,222 | INFO     | intersect: -11843862879.20333
[2026-03-14 11:41:25] 2026-03-14 10:40:35,223 | INFO     | chi2: 1.619538784938115
[2026-03-14 11:41:25] 2026-03-14 10:40:35,223 | INFO     | current chi2=1.619538784938115 (change=-0.08555455686782945 %)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,223 | INFO     | right removable region: 159
[2026-03-14 11:41:25] 2026-03-14 10:40:35,223 | INFO     | sum of square deviations: 1392881930.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,224 | INFO     | sum of deviations: -28154935093.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,225 | INFO     | mean x: 1773479810.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,225 | INFO     | mean y: 2519054.2
[2026-03-14 11:41:25] 2026-03-14 10:40:35,225 | INFO     | intersect: 35850646496.91581
[2026-03-14 11:41:25] 2026-03-14 10:40:35,225 | INFO     | chi2: 0.9129384003413246
[2026-03-14 11:41:25] 2026-03-14 10:40:35,225 | INFO     | current chi2=0.9129384003413246 (change=61.66126571816968 %)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,226 | INFO     | sum of square deviations: 1270051720.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,227 | INFO     | sum of deviations: -26405672802.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,227 | INFO     | mean x: 1773479962.5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,227 | INFO     | mean y: 2516814.225
[2026-03-14 11:41:25] 2026-03-14 10:40:35,227 | INFO     | intersect: 36874977103.22664
[2026-03-14 11:41:25] 2026-03-14 10:40:35,227 | INFO     | chi2: 0.8987283013881369
[2026-03-14 11:41:25] 2026-03-14 10:40:35,228 | INFO     | current chi2=0.8987283013881369 (change=1.5565233040777893 %)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,228 | INFO     | left removable region: 20
[2026-03-14 11:41:25] 2026-03-14 10:40:35,228 | INFO     | sum of square deviations: 832722590.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,229 | INFO     | sum of deviations: -4483027372.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,229 | INFO     | mean x: 1773479932.0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,229 | INFO     | mean y: 2516393.3165467624
[2026-03-14 11:41:25] 2026-03-14 10:40:35,229 | INFO     | intersect: 9550184697.653889
[2026-03-14 11:41:25] 2026-03-14 10:40:35,230 | INFO     | chi2: 0.05500255153212344
[2026-03-14 11:41:25] 2026-03-14 10:40:35,230 | INFO     | current memory leak: -5.38 B/s (using 139 data points, chi2=0.06)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,230 | INFO     | could have reported an average CPU frequency of 1999 MHz (9 samples)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | ..............................
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . Timing measurements:
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . get job = 0 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . initial setup = 9 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . payload setup = 9 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . stage-in = 0 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . payload execution = 10334 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,231 | INFO     | . stage-out = 1 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,232 | INFO     | . log creation = 0 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,232 | INFO     | ..............................
[2026-03-14 11:41:25] 2026-03-14 10:40:35,348 | INFO     | 
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | job summary report
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | --------------------------------------------------
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | PanDA job id: 7054059799
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | task id: 48967085
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | errors: (none)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,349 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | pilot state: finished 
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | transexitcode: 0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | exeerrorcode: 0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | exeerrordiag: 
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | exitcode: 0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | exitmsg: OK
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | cpuconsumptiontime: 68676 s
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | nevents: 400
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | neventsw: 0
[2026-03-14 11:41:25] 2026-03-14 10:40:35,350 | INFO     | pid: 7576
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | pgrp: 7576
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | corecount: 8
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | event service: False
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | sizes: {0: 2279152, 1: 2280270, 2: 2280270, 10347: 2308962, 10350: 2318016, 10351: 2318218}
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | --------------------------------------------------
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | 
[2026-03-14 11:41:25] 2026-03-14 10:40:35,351 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-03-14 11:41:25] 2026-03-14 10:40:35,376 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,377 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,378 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 11:41:25] 2026-03-14 10:40:35,379 | INFO     | job 7054059799 has completed (purged errors)
[2026-03-14 11:41:25] 2026-03-14 10:40:35,379 | INFO     | overall cleanup function is called
[2026-03-14 11:41:25] 2026-03-14 10:40:36,383 | INFO     | --- collectZombieJob: --- 10, [7576]
[2026-03-14 11:41:25] 2026-03-14 10:40:36,384 | INFO     | zombie collector waiting for pid 7576
[2026-03-14 11:41:25] 2026-03-14 10:40:36,384 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 11:41:25] 2026-03-14 10:40:36,384 | INFO     | collected zombie processes
[2026-03-14 11:41:25] 2026-03-14 10:40:36,384 | INFO     | will attempt to kill all subprocesses of pid=7576
[2026-03-14 11:41:25] 2026-03-14 10:40:36,447 | INFO     | process IDs to be killed: [7576] (in reverse order)
[2026-03-14 11:41:25] 2026-03-14 10:40:36,504 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 11:41:25] 2026-03-14 10:40:36,504 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 11:41:25] 2026-03-14 10:40:36,506 | INFO     | did not find any defunct processes belonging to 7576
[2026-03-14 11:41:25] 2026-03-14 10:40:36,508 | INFO     | did not find any defunct processes belonging to 7576
[2026-03-14 11:41:25] 2026-03-14 10:40:36,508 | INFO     | ready for new job
[2026-03-14 11:41:25] 2026-03-14 10:40:36,508 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 11:41:25] 2026-03-14 10:40:36,510 | INFO     | **************************************
[2026-03-14 11:41:25] 2026-03-14 10:40:36,510 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 11:41:25] 2026-03-14 10:40:36,510 | INFO     | **************************************
[2026-03-14 11:41:25] 2026-03-14 10:40:36,511 | INFO     | 
[2026-03-14 11:41:25] 2026-03-14 10:40:36,511 | INFO     | pilot is running in a VM
[2026-03-14 11:41:25] 2026-03-14 10:40:36,511 | INFO     | architecture information:
[2026-03-14 11:41:25] 2026-03-14 10:40:36,512 | INFO     | executing command: cat /etc/os-release
[2026-03-14 11:41:25] 2026-03-14 10:40:36,538 | INFO     | cat /etc/os-release:
[2026-03-14 11:41:25] NAME="CentOS Linux"
[2026-03-14 11:41:25] VERSION="7 (Core)"
[2026-03-14 11:41:25] ID="centos"
[2026-03-14 11:41:25] ID_LIKE="rhel fedora"
[2026-03-14 11:41:25] VERSION_ID="7"
[2026-03-14 11:41:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 11:41:25] ANSI_COLOR="0;31"
[2026-03-14 11:41:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 11:41:25] HOME_URL="https://www.centos.org/"
[2026-03-14 11:41:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 11:41:25] 
[2026-03-14 11:41:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 11:41:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 11:41:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 11:41:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 11:41:25] 
[2026-03-14 11:41:25] 2026-03-14 10:40:36,539 | INFO     | **************************************
[2026-03-14 11:41:25] 2026-03-14 10:40:37,042 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-03-14 11:41:25] 2026-03-14 10:40:37,077 | INFO     | sufficient remaining disk space (496860397568 B)
[2026-03-14 11:41:25] 2026-03-14 10:40:37,077 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 11:41:25] 2026-03-14 10:40:37,077 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 11:41:25] 2026-03-14 10:40:37,077 | INFO     | update_server=False
[2026-03-14 11:41:25] 2026-03-14 10:40:37,077 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 11:41:25] 2026-03-14 10:40:37,078 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:41:25] 2026-03-14 10:40:37,078 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 11:41:25] 2026-03-14 10:40:37,079 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 11:41:25] 2026-03-14 10:40:37,079 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 11:41:25] 2026-03-14 10:40:37,080 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 11:41:25] 2026-03-14 10:40:37,080 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 11:41:25] 2026-03-14 10:40:37,653 | WARNING  | process 7576 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 11:41:25] 2026-03-14 10:40:37,704 | INFO     | using path: /var/lib/boinc/slots/5/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 11:41:25] 2026-03-14 10:40:37,724 | INFO     | all payload control threads have been joined
[2026-03-14 11:41:25] 2026-03-14 10:40:37,769 | INFO     | number of running child processes to parent process 7576: 1
[2026-03-14 11:41:25] 2026-03-14 10:40:37,769 | INFO     | maximum number of monitored processes: 6
[2026-03-14 11:41:25] 2026-03-14 10:40:37,770 | INFO     | aborting job monitoring since job object (job id=7054059799) has expired
[2026-03-14 11:41:25] 2026-03-14 10:40:37,770 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:41:25] 2026-03-14 10:40:37,770 | INFO     | will abort loop
[2026-03-14 11:41:25] 2026-03-14 10:40:37,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 11:41:25] 2026-03-14 10:40:37,930 | INFO     | all data control threads have been joined
[2026-03-14 11:41:25] 2026-03-14 10:40:38,065 | INFO     | all job control threads have been joined
[2026-03-14 11:41:25] 2026-03-14 10:40:38,080 | INFO     | job.realtimelogging is not enabled
[2026-03-14 11:41:25] 2026-03-14 10:40:38,083 | INFO     | [job] retrieve thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,084 | INFO     | [job] queue monitor thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,245 | INFO     | [data] copytool_in thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,695 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,702 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,730 | INFO     | [payload] control thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,775 | INFO     | [job] job monitor thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:38,936 | INFO     | [data] control thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,071 | INFO     | [job] control thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,078 | INFO     | [payload] failed_post thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,081 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,431 | INFO     | [payload] validate_post thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,503 | INFO     | [job] validate thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,539 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:39,849 | INFO     | [data] copytool_out thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:40:41,086 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 11:41:25] 2026-03-14 10:41:19,525 | INFO     | [monitor] cgroup control has ended
[2026-03-14 11:41:25] 2026-03-14 10:41:19,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264911857472)>', '<ExcThread(monitor, started 140264471508736)>']
[2026-03-14 11:41:25] 2026-03-14 10:41:20,267 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 11:41:25] 2026-03-14 10:41:20,268 | INFO     | [monitor] control thread has ended
[2026-03-14 11:41:25] 2026-03-14 10:41:24,738 | INFO     | all workflow threads have been joined
[2026-03-14 11:41:25] 2026-03-14 10:41:24,738 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 11:41:25] 2026-03-14 10:41:24,738 | INFO     | traces error code: 0
[2026-03-14 11:41:25] 2026-03-14 10:41:24,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 11:41:25] 2026-03-14 10:41:24,885 [wrapper] ==== pilot stdout END ====
[2026-03-14 11:41:25] 2026-03-14 10:41:24,890 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 11:41:25] 2026-03-14 10:41:24,895 [wrapper] pilotpid: 3160
[2026-03-14 11:41:25] 2026-03-14 10:41:24,903 [wrapper] Pilot exit status: 0
[2026-03-14 11:41:25] 2026-03-14 10:41:24,945 [wrapper] pandaids: 7054059799
[2026-03-14 11:41:25] 2026-03-14 10:41:24,998 [wrapper] cleanup supervisor_pilot 12975 3161
[2026-03-14 11:41:25] 2026-03-14 10:41:25,007 [wrapper] Test setup, not cleaning
[2026-03-14 11:41:25] 2026-03-14 10:41:25,019 [wrapper] apfmon messages muted
[2026-03-14 11:41:25] 2026-03-14 10:41:25,023 [wrapper] ==== wrapper stdout END ====
[2026-03-14 11:41:25] 2026-03-14 10:41:25,034 [wrapper] ==== wrapper stderr END ====
[2026-03-14 11:41:25]  *** Error codes and diagnostics ***
[2026-03-14 11:41:25]     "exeErrorCode": 0,
[2026-03-14 11:41:25]     "exeErrorDiag": "",
[2026-03-14 11:41:25]     "pilotErrorCode": 0,
[2026-03-14 11:41:25]     "pilotErrorDiag": "",
[2026-03-14 11:41:25]  *** Listing of results directory ***
[2026-03-14 11:41:25] total 411820
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc    585013 Mar 13 23:28 pilot3.tar.gz
[2026-03-14 11:41:25] -rwx------. 1 boinc boinc     36322 Mar 13 23:28 runpilot2-wrapper.sh
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc      5111 Mar 13 23:29 queuedata.json
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc       100 Mar 14 08:47 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 11:41:25] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 08:47 run_atlas
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc       105 Mar 14 08:47 job.xml
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc 211415027 Mar 14 08:47 EVNT.48967083._000894.pool.root.1
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc    597523 Mar 14 08:47 input.tar.gz
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc      6391 Mar 14 08:47 init_data.xml
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:47 start_atlas.sh
[2026-03-14 11:41:25] drwxrwx--x. 2 boinc boinc        68 Mar 14 08:47 shared
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc         0 Mar 14 08:47 boinc_lockfile
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc      2563 Mar 14 08:47 pandaJob.out
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc   1004579 Mar 14 08:47 agis_schedconf.cvmfs.json
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc   1511579 Mar 14 08:47 agis_ddmendpoints.agis.ALL.json
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc       415 Mar 14 08:48 workernode_map.json
[2026-03-14 11:41:25] drwx------. 5 boinc boinc      4096 Mar 14 08:48 pilot3
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc 202612611 Mar 14 11:39 HITS.48967085._022021.pool.root.1
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc        95 Mar 14 11:40 pilot_heartbeat.json
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc       530 Mar 14 11:40 boinc_task_state.xml
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc      1016 Mar 14 11:40 memory_monitor_summary.json
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc    406805 Mar 14 11:40 log.48967085._022021.job.log.tgz.1
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc      6315 Mar 14 11:40 heartbeat.json
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc      8192 Mar 14 11:40 boinc_mmap_file
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc        28 Mar 14 11:40 wrapper_checkpoint.txt
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc      5198 Mar 14 11:41 pilotlog.txt
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc   1473693 Mar 14 11:41 log.48967085._022021.job.log.1
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc       357 Mar 14 11:41 output.list
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc       620 Mar 14 11:41 runtime_log
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc   1894400 Mar 14 11:41 result.tar.gz
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc      8816 Mar 14 11:41 runtime_log.err
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc       654 Mar 14 11:41 b09MDmpAQL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm32qLDmr9TZyn.diag
[2026-03-14 11:41:25] -rw-r--r--. 1 boinc boinc     20597 Mar 14 11:41 stderr.txt
[2026-03-14 11:41:25] HITS file was successfully produced:
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc 202612611 Mar 14 11:39 shared/HITS.pool.root.1
[2026-03-14 11:41:25]  *** Contents of shared directory: ***
[2026-03-14 11:41:25] total 406776
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc 211415027 Mar 14 08:47 ATLAS.root_0
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc    597523 Mar 14 08:47 input.tar.gz
[2026-03-14 11:41:25] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:47 start_atlas.sh
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc 202612611 Mar 14 11:39 HITS.pool.root.1
[2026-03-14 11:41:25] -rw-------. 1 boinc boinc   1894400 Mar 14 11:41 result.tar.gz
11:41:26 (31516): run_atlas exited; CPU time 68763.963870
11:41:26 (31516): called boinc_finish(0)

</stderr_txt>
]]>

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