Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:57:59 (595863): wrapper (7.7.26015): starting
19:57:59 (595863): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 19:57:59] Arguments: --nthreads 4
[2026-03-14 19:57:59] Threads: 4
[2026-03-14 19:57:59] Checking for CVMFS
[2026-03-14 19:57:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 19:58:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 19:58:00] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 19:58:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 19:58:00] 2.9.2.0 141980 24686 104236 157286 2 50 30667046 36864000 0 130560 0 12902791 99.986 923853 7564 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 19:58:00] CVMFS is ok
[2026-03-14 19:58:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 19:58:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 19:58:00] Further information can be found at the LHC@home message board.
[2026-03-14 19:58:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 19:58:00] Checking for apptainer binary...
[2026-03-14 19:58:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 19:58:00] Running /usr/bin/apptainer --version
[2026-03-14 19:58:00] apptainer version 1.4.1-1.1
[2026-03-14 19:58:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 19:58:00] magicA244a
[2026-03-14 19:58:00] apptainer works
[2026-03-14 19:58:00] Set ATHENA_PROC_NUMBER=4
[2026-03-14 19:58:00] Set ATHENA_CORE_NUMBER=4
[2026-03-14 19:58:00] Starting ATLAS job with PandaID=7045584673
[2026-03-14 19:58:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 21:01:21]  *** The last 200 lines of the pilot log: ***
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | job 7045584673 has completed (purged errors)
[2026-03-14 21:01:21] 2026-03-14 20:00:43,104 | INFO     | overall cleanup function is called
[2026-03-14 21:01:21] 2026-03-14 20:00:44,111 | INFO     | --- collectZombieJob: --- 10, [604489]
[2026-03-14 21:01:21] 2026-03-14 20:00:44,112 | INFO     | zombie collector waiting for pid 604489
[2026-03-14 21:01:21] 2026-03-14 20:00:44,112 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 21:01:21] 2026-03-14 20:00:44,112 | INFO     | collected zombie processes
[2026-03-14 21:01:21] 2026-03-14 20:00:44,112 | INFO     | will attempt to kill all subprocesses of pid=604489
[2026-03-14 21:01:21] 2026-03-14 20:00:44,154 | INFO     | process IDs to be killed: [604489] (in reverse order)
[2026-03-14 21:01:21] 2026-03-14 20:00:44,182 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 21:01:21] 2026-03-14 20:00:44,182 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 21:01:21] 2026-03-14 20:00:44,183 | INFO     | did not find any defunct processes belonging to 604489
[2026-03-14 21:01:21] 2026-03-14 20:00:44,184 | INFO     | did not find any defunct processes belonging to 604489
[2026-03-14 21:01:21] 2026-03-14 20:00:44,184 | INFO     | ready for new job
[2026-03-14 21:01:21] 2026-03-14 20:00:44,184 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 21:01:21] 2026-03-14 20:00:44,185 | INFO     | **************************************
[2026-03-14 21:01:21] 2026-03-14 20:00:44,185 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 21:01:21] 2026-03-14 20:00:44,185 | INFO     | **************************************
[2026-03-14 21:01:21] 2026-03-14 20:00:44,185 | INFO     | 
[2026-03-14 21:01:21] 2026-03-14 20:00:44,186 | INFO     | architecture information:
[2026-03-14 21:01:21] 2026-03-14 20:00:44,186 | INFO     | executing command: cat /etc/os-release
[2026-03-14 21:01:21] 2026-03-14 20:00:44,196 | INFO     | cat /etc/os-release:
[2026-03-14 21:01:21] NAME="CentOS Linux"
[2026-03-14 21:01:21] VERSION="7 (Core)"
[2026-03-14 21:01:21] ID="centos"
[2026-03-14 21:01:21] ID_LIKE="rhel fedora"
[2026-03-14 21:01:21] VERSION_ID="7"
[2026-03-14 21:01:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 21:01:21] ANSI_COLOR="0;31"
[2026-03-14 21:01:21] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 21:01:21] HOME_URL="https://www.centos.org/"
[2026-03-14 21:01:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 21:01:21] 
[2026-03-14 21:01:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 21:01:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 21:01:21] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 21:01:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 21:01:21] 
[2026-03-14 21:01:21] 2026-03-14 20:00:44,196 | INFO     | **************************************
[2026-03-14 21:01:21] 2026-03-14 20:00:44,700 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 21:01:21] 2026-03-14 20:00:44,712 | INFO     | sufficient remaining disk space (326044221440 B)
[2026-03-14 21:01:21] 2026-03-14 20:00:44,712 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | INFO     | update_server=False
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 21:01:21] 2026-03-14 20:00:44,713 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 21:01:21] 2026-03-14 20:00:44,796 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 21:01:21] 2026-03-14 20:00:45,009 | INFO     | all payload control threads have been joined
[2026-03-14 21:01:21] 2026-03-14 20:00:45,032 | INFO     | all data control threads have been joined
[2026-03-14 21:01:21] 2026-03-14 20:00:45,353 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 21:01:21] 2026-03-14 20:00:45,354 | INFO     | aborting loop
[2026-03-14 21:01:21] 2026-03-14 20:00:45,474 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 21:01:21] 2026-03-14 20:00:45,718 | INFO     | [job] retrieve thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:45,719 | INFO     | [job] queue monitor thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:45,759 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:45,775 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:45,849 | INFO     | [data] copytool_in thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,015 | INFO     | [payload] control thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,037 | INFO     | [data] control thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,085 | INFO     | [payload] failed_post thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,313 | INFO     | all job control threads have been joined
[2026-03-14 21:01:21] 2026-03-14 20:00:46,359 | INFO     | [job] job monitor thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,483 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:46,802 | INFO     | [data] copytool_out thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:47,103 | INFO     | [job] validate thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:47,112 | INFO     | [payload] validate_post thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:47,319 | INFO     | [job] control thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:49,482 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:00:55,670 | INFO     | job.realtimelogging is not enabled
[2026-03-14 21:01:21] 2026-03-14 20:00:56,676 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 21:01:21] 2026-03-14 20:01:16,104 | INFO     | [monitor] cgroup control has ended
[2026-03-14 21:01:21] 2026-03-14 20:01:16,410 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411093653312)>', '<ExcThread(monitor, started 140410290677504)>']
[2026-03-14 21:01:21] 2026-03-14 20:01:16,884 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 21:01:21] 2026-03-14 20:01:16,884 | INFO     | [monitor] control thread has ended
[2026-03-14 21:01:21] 2026-03-14 20:01:21,436 | INFO     | all workflow threads have been joined
[2026-03-14 21:01:21] 2026-03-14 20:01:21,436 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 21:01:21] 2026-03-14 20:01:21,436 | INFO     | traces error code: 0
[2026-03-14 21:01:21] 2026-03-14 20:01:21,437 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 21:01:21] 2026-03-14 20:01:21,491 [wrapper] ==== pilot stdout END ====
[2026-03-14 21:01:21] 2026-03-14 20:01:21,494 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 21:01:21] 2026-03-14 20:01:21,496 [wrapper] pilotpid: 599972
[2026-03-14 21:01:21] 2026-03-14 20:01:21,499 [wrapper] Pilot exit status: 0
[2026-03-14 21:01:21] 2026-03-14 20:01:21,507 [wrapper] pandaids: 7045584673
[2026-03-14 21:01:21] 2026-03-14 20:01:21,524 [wrapper] cleanup supervisor_pilot  609608 599973
[2026-03-14 21:01:21] 2026-03-14 20:01:21,527 [wrapper] Test setup, not cleaning
[2026-03-14 21:01:21] 2026-03-14 20:01:21,529 [wrapper] apfmon messages muted
[2026-03-14 21:01:21] 2026-03-14 20:01:21,532 [wrapper] ==== wrapper stdout END ====
[2026-03-14 21:01:21] 2026-03-14 20:01:21,534 [wrapper] ==== wrapper stderr END ====
[2026-03-14 21:01:21]  *** Error codes and diagnostics ***
[2026-03-14 21:01:21]     "exeErrorCode": 0,
[2026-03-14 21:01:21]     "exeErrorDiag": "",
[2026-03-14 21:01:21]     "pilotErrorCode": 0,
[2026-03-14 21:01:21]     "pilotErrorDiag": "",
[2026-03-14 21:01:21]  *** Listing of results directory ***
[2026-03-14 21:01:21] total 619480
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc    585013 Mar 14 02:49 pilot3.tar.gz
[2026-03-14 21:01:21] -rwx------ 1 boinc boinc     36322 Mar 14 02:52 runpilot2-wrapper.sh
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc      5111 Mar 14 02:56 queuedata.json
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc       100 Mar 14 19:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 21:01:21] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 19:57 run_atlas
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc       105 Mar 14 19:57 job.xml
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc 437586932 Mar 14 19:57 EVNT.46701403._002507.pool.root.1
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc    597534 Mar 14 19:57 input.tar.gz
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc     15845 Mar 14 19:57 start_atlas.sh
[2026-03-14 21:01:21] drwxrwx--x 2 boinc boinc      4096 Mar 14 19:57 shared
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc         0 Mar 14 19:57 boinc_setup_complete
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc      6438 Mar 14 19:57 init_data.xml
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc         0 Mar 14 19:57 boinc_lockfile
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc      2572 Mar 14 19:58 pandaJob.out
[2026-03-14 21:01:21] -rw------- 1 boinc boinc   1005889 Mar 14 19:58 agis_schedconf.cvmfs.json
[2026-03-14 21:01:21] -rw------- 1 boinc boinc   1511579 Mar 14 19:58 agis_ddmendpoints.agis.ALL.json
[2026-03-14 21:01:21] -rw------- 1 boinc boinc       420 Mar 14 19:58 workernode_map.json
[2026-03-14 21:01:21] drwx------ 5 boinc boinc      4096 Mar 14 19:58 pilot3
[2026-03-14 21:01:21] -rw------- 1 boinc boinc 191167724 Mar 14 21:00 HITS.48955015._022474.pool.root.1
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc       530 Mar 14 21:00 boinc_task_state.xml
[2026-03-14 21:01:21] -rw------- 1 boinc boinc        95 Mar 14 21:00 pilot_heartbeat.json
[2026-03-14 21:01:21] -rw------- 1 boinc boinc      1013 Mar 14 21:00 memory_monitor_summary.json
[2026-03-14 21:01:21] -rw------- 1 boinc boinc    272708 Mar 14 21:00 log.48955015._022474.job.log.tgz.1
[2026-03-14 21:01:21] -rw------- 1 boinc boinc      6297 Mar 14 21:00 heartbeat.json
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc      8192 Mar 14 21:01 boinc_mmap_file
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc        27 Mar 14 21:01 wrapper_checkpoint.txt
[2026-03-14 21:01:21] -rw------- 1 boinc boinc      4624 Mar 14 21:01 pilotlog.txt
[2026-03-14 21:01:21] -rw------- 1 boinc boinc    563472 Mar 14 21:01 log.48955015._022474.job.log.1
[2026-03-14 21:01:21] -rw------- 1 boinc boinc       357 Mar 14 21:01 output.list
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc       620 Mar 14 21:01 runtime_log
[2026-03-14 21:01:21] -rw------- 1 boinc boinc    849920 Mar 14 21:01 result.tar.gz
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc      8916 Mar 14 21:01 runtime_log.err
[2026-03-14 21:01:21] -rw------- 1 boinc boinc       661 Mar 14 21:01 GxGKDm6LTL9n9Rq4apOajLDm4fhM0noT9bVooX4SDm91oLDmvSfF7n.diag
[2026-03-14 21:01:21] -rw-r--r-- 1 boinc boinc     12556 Mar 14 21:01 stderr.txt
[2026-03-14 21:01:21] HITS file was successfully produced:
[2026-03-14 21:01:21] -rw------- 1 boinc boinc 191167724 Mar 14 21:00 shared/HITS.pool.root.1
[2026-03-14 21:01:21]  *** Contents of shared directory: ***
[2026-03-14 21:01:21] total 615456
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc 437586932 Mar 14 19:57 ATLAS.root_0
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc    597534 Mar 14 19:57 input.tar.gz
[2026-03-14 21:01:21] -rw-r--r-- 2 boinc boinc     15845 Mar 14 19:57 start_atlas.sh
[2026-03-14 21:01:21] -rw------- 1 boinc boinc 191167724 Mar 14 21:00 HITS.pool.root.1
[2026-03-14 21:01:21] -rw------- 1 boinc boinc    849920 Mar 14 21:01 result.tar.gz
21:01:23 (595863): run_atlas exited; CPU time 13610.682948
21:01:23 (595863): called boinc_finish(0)

</stderr_txt>
]]>

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