Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:06:38 (2658064): wrapper (7.7.26015): starting
10:06:38 (2658064): wrapper: running run_atlas (--nthreads 2)
[2026-03-14 10:06:38] Arguments: --nthreads 2
[2026-03-14 10:06:38] Threads: 2
[2026-03-14 10:06:38] Checking for CVMFS
[2026-03-14 10:06:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 10:06:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 10:06:39] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 10:06:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 10:06:39] 2.9.2.0 2369423 2940 58644 157271 1 50 30786766 36864001 0 130560 0 814083 99.975 114546 13647 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 10:06:39] CVMFS is ok
[2026-03-14 10:06:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 10:06:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 10:06:39] Further information can be found at the LHC@home message board.
[2026-03-14 10:06:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 10:06:39] Checking for apptainer binary...
[2026-03-14 10:06:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 10:06:39] Running /usr/bin/apptainer --version
[2026-03-14 10:06:39] apptainer version 1.4.1-1.1
[2026-03-14 10:06:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 10:06:39] thA310
[2026-03-14 10:06:39] apptainer works
[2026-03-14 10:06:39] Set ATHENA_PROC_NUMBER=2
[2026-03-14 10:06:39] Set ATHENA_CORE_NUMBER=2
[2026-03-14 10:06:39] Starting ATLAS job with PandaID=7044842486
[2026-03-14 10:06:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 12:09:38]  *** The last 200 lines of the pilot log: ***
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 12:09:38] 2026-03-14 11:09:07,110 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 12:09:38] 2026-03-14 11:09:07,111 | INFO     | job 7044842486 has completed (purged errors)
[2026-03-14 12:09:38] 2026-03-14 11:09:07,111 | INFO     | overall cleanup function is called
[2026-03-14 12:09:38] 2026-03-14 11:09:08,117 | INFO     | --- collectZombieJob: --- 10, [2666507]
[2026-03-14 12:09:38] 2026-03-14 11:09:08,117 | INFO     | zombie collector waiting for pid 2666507
[2026-03-14 12:09:38] 2026-03-14 11:09:08,119 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 12:09:38] 2026-03-14 11:09:08,119 | INFO     | collected zombie processes
[2026-03-14 12:09:38] 2026-03-14 11:09:08,119 | INFO     | will attempt to kill all subprocesses of pid=2666507
[2026-03-14 12:09:38] 2026-03-14 11:09:08,157 | INFO     | process IDs to be killed: [2666507] (in reverse order)
[2026-03-14 12:09:38] 2026-03-14 11:09:08,180 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 12:09:38] 2026-03-14 11:09:08,180 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 12:09:38] 2026-03-14 11:09:08,181 | INFO     | did not find any defunct processes belonging to 2666507
[2026-03-14 12:09:38] 2026-03-14 11:09:08,182 | INFO     | did not find any defunct processes belonging to 2666507
[2026-03-14 12:09:38] 2026-03-14 11:09:08,182 | INFO     | ready for new job
[2026-03-14 12:09:38] 2026-03-14 11:09:08,182 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 12:09:38] 2026-03-14 11:09:08,182 | INFO     | **************************************
[2026-03-14 12:09:38] 2026-03-14 11:09:08,183 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 12:09:38] 2026-03-14 11:09:08,183 | INFO     | **************************************
[2026-03-14 12:09:38] 2026-03-14 11:09:08,183 | INFO     | 
[2026-03-14 12:09:38] 2026-03-14 11:09:08,183 | INFO     | architecture information:
[2026-03-14 12:09:38] 2026-03-14 11:09:08,183 | INFO     | executing command: cat /etc/os-release
[2026-03-14 12:09:38] 2026-03-14 11:09:08,193 | INFO     | cat /etc/os-release:
[2026-03-14 12:09:38] NAME="CentOS Linux"
[2026-03-14 12:09:38] VERSION="7 (Core)"
[2026-03-14 12:09:38] ID="centos"
[2026-03-14 12:09:38] ID_LIKE="rhel fedora"
[2026-03-14 12:09:38] VERSION_ID="7"
[2026-03-14 12:09:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 12:09:38] ANSI_COLOR="0;31"
[2026-03-14 12:09:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 12:09:38] HOME_URL="https://www.centos.org/"
[2026-03-14 12:09:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 12:09:38] 
[2026-03-14 12:09:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 12:09:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 12:09:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 12:09:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 12:09:38] 
[2026-03-14 12:09:38] 2026-03-14 11:09:08,193 | INFO     | **************************************
[2026-03-14 12:09:38] 2026-03-14 11:09:08,696 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 12:09:38] 2026-03-14 11:09:08,716 | INFO     | sufficient remaining disk space (491608080384 B)
[2026-03-14 12:09:38] 2026-03-14 11:09:08,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 12:09:38] 2026-03-14 11:09:08,717 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 12:09:38] 2026-03-14 11:09:08,717 | INFO     | update_server=False
[2026-03-14 12:09:38] 2026-03-14 11:09:08,717 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 12:09:38] 2026-03-14 11:09:08,718 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 12:09:38] 2026-03-14 11:09:08,718 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 12:09:38] 2026-03-14 11:09:08,718 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 12:09:38] 2026-03-14 11:09:08,797 | INFO     | [monitor] cgroup control has ended
[2026-03-14 12:09:38] 2026-03-14 11:09:08,872 | INFO     | all data control threads have been joined
[2026-03-14 12:09:38] 2026-03-14 11:09:08,993 | INFO     | job.realtimelogging is not enabled
[2026-03-14 12:09:38] 2026-03-14 11:09:09,003 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-14 12:09:38] 2026-03-14 11:09:09,003 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-14 12:09:38] 2026-03-14 11:09:09,003 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 12:09:38] 2026-03-14 11:09:09,003 | INFO     | will abort loop
[2026-03-14 12:09:38] 2026-03-14 11:09:09,173 | INFO     | all payload control threads have been joined
[2026-03-14 12:09:38] 2026-03-14 11:09:09,723 | INFO     | [job] queue monitor thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:09,724 | INFO     | [job] retrieve thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:09,878 | INFO     | [data] control thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:09,999 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,008 | INFO     | [job] job monitor thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,031 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,179 | INFO     | [payload] control thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,273 | INFO     | all job control threads have been joined
[2026-03-14 12:09:38] 2026-03-14 11:09:10,274 | INFO     | [payload] failed_post thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,725 | INFO     | [data] copytool_out thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,738 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,757 | INFO     | [job] validate thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,784 | INFO     | [data] copytool_in thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,807 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:10,835 | INFO     | [payload] validate_post thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:11,279 | INFO     | [job] control thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:12,724 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 12:09:38] 2026-03-14 11:09:14,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346623866688)>', '<ExcThread(monitor, started 140345757128448)>']
[2026-03-14 12:09:38] 2026-03-14 11:09:19,152 | INFO     | all workflow threads have been joined
[2026-03-14 12:09:38] 2026-03-14 11:09:19,152 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 12:09:38] 2026-03-14 11:09:19,152 | INFO     | traces error code: 0
[2026-03-14 12:09:38] 2026-03-14 11:09:19,153 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 12:09:38] 2026-03-14 11:09:38,376 | INFO     | PID=2662094 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 12:09:38] 2026-03-14 11:09:38,377 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 12:09:38] 2026-03-14 11:09:38,377 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 12:09:38] 2026-03-14 11:09:38,377 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 12:09:38] 2026-03-14 11:09:38,377 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 12:09:38] 2026-03-14 11:09:38,377 | INFO     | [monitor] control thread has ended
[2026-03-14 12:09:38] 2026-03-14 11:09:38,417 [wrapper] ==== pilot stdout END ====
[2026-03-14 12:09:38] 2026-03-14 11:09:38,420 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 12:09:38] 2026-03-14 11:09:38,423 [wrapper] pilotpid: 2662094
[2026-03-14 12:09:38] 2026-03-14 11:09:38,425 [wrapper] Pilot exit status: 0
[2026-03-14 12:09:38] 2026-03-14 11:09:38,432 [wrapper] pandaids: 7044842486
[2026-03-14 12:09:38] 2026-03-14 11:09:38,446 [wrapper] cleanup supervisor_pilot 2672734 2662095
[2026-03-14 12:09:38] 2026-03-14 11:09:38,448 [wrapper] Test setup, not cleaning
[2026-03-14 12:09:38] 2026-03-14 11:09:38,450 [wrapper] apfmon messages muted
[2026-03-14 12:09:38] 2026-03-14 11:09:38,453 [wrapper] ==== wrapper stdout END ====
[2026-03-14 12:09:38] 2026-03-14 11:09:38,455 [wrapper] ==== wrapper stderr END ====
[2026-03-14 12:09:38]  *** Error codes and diagnostics ***
[2026-03-14 12:09:38]     "exeErrorCode": 0,
[2026-03-14 12:09:38]     "exeErrorDiag": "",
[2026-03-14 12:09:38]     "pilotErrorCode": 0,
[2026-03-14 12:09:38]     "pilotErrorDiag": "",
[2026-03-14 12:09:38]  *** Listing of results directory ***
[2026-03-14 12:09:38] total 622444
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc    585013 Mar 13 19:59 pilot3.tar.gz
[2026-03-14 12:09:38] -rwx------ 1 boinc boinc     36322 Mar 13 20:03 runpilot2-wrapper.sh
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc      5111 Mar 13 20:03 queuedata.json
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc       100 Mar 14 10:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 12:09:38] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 10:06 run_atlas
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc       105 Mar 14 10:06 job.xml
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc 442121121 Mar 14 10:06 EVNT.46701403._002431.pool.root.1
[2026-03-14 12:09:38] drwxrwx--x 2 boinc boinc      4096 Mar 14 10:06 shared
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc    597527 Mar 14 10:06 input.tar.gz
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc     15845 Mar 14 10:06 start_atlas.sh
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc         0 Mar 14 10:06 boinc_setup_complete
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc      6205 Mar 14 10:06 init_data.xml
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc         0 Mar 14 10:06 boinc_lockfile
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc      2572 Mar 14 10:06 pandaJob.out
[2026-03-14 12:09:38] -rw------- 1 boinc boinc   1004579 Mar 14 10:06 agis_schedconf.cvmfs.json
[2026-03-14 12:09:38] -rw------- 1 boinc boinc   1511579 Mar 14 10:06 agis_ddmendpoints.agis.ALL.json
[2026-03-14 12:09:38] -rw------- 1 boinc boinc       416 Mar 14 10:06 workernode_map.json
[2026-03-14 12:09:38] drwx------ 5 boinc boinc      4096 Mar 14 10:06 pilot3
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc       530 Mar 14 12:08 boinc_task_state.xml
[2026-03-14 12:09:38] -rw------- 1 boinc boinc 188636499 Mar 14 12:08 HITS.48955015._018798.pool.root.1
[2026-03-14 12:09:38] -rw------- 1 boinc boinc      1017 Mar 14 12:09 memory_monitor_summary.json
[2026-03-14 12:09:38] -rw------- 1 boinc boinc    302040 Mar 14 12:09 log.48955015._018798.job.log.tgz.1
[2026-03-14 12:09:38] -rw------- 1 boinc boinc      6293 Mar 14 12:09 heartbeat.json
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc      8192 Mar 14 12:09 boinc_mmap_file
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc        27 Mar 14 12:09 wrapper_checkpoint.txt
[2026-03-14 12:09:38] -rw------- 1 boinc boinc       747 Mar 14 12:09 pilotlog.txt
[2026-03-14 12:09:38] -rw------- 1 boinc boinc        95 Mar 14 12:09 pilot_heartbeat.json
[2026-03-14 12:09:38] -rw------- 1 boinc boinc   1055976 Mar 14 12:09 log.48955015._018798.job.log.1
[2026-03-14 12:09:38] -rw------- 1 boinc boinc       357 Mar 14 12:09 output.list
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc       620 Mar 14 12:09 runtime_log
[2026-03-14 12:09:38] -rw------- 1 boinc boinc   1372160 Mar 14 12:09 result.tar.gz
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc      8896 Mar 14 12:09 runtime_log.err
[2026-03-14 12:09:38] -rw------- 1 boinc boinc       657 Mar 14 12:09 dBrKDmayML9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmbYqLDmHGevlm.diag
[2026-03-14 12:09:38] -rw-r--r-- 1 boinc boinc     11738 Mar 14 12:09 stderr.txt
[2026-03-14 12:09:38] HITS file was successfully produced:
[2026-03-14 12:09:38] -rw------- 1 boinc boinc 188636499 Mar 14 12:08 shared/HITS.pool.root.1
[2026-03-14 12:09:38]  *** Contents of shared directory: ***
[2026-03-14 12:09:38] total 617920
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc 442121121 Mar 14 10:06 ATLAS.root_0
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc    597527 Mar 14 10:06 input.tar.gz
[2026-03-14 12:09:38] -rw-r--r-- 2 boinc boinc     15845 Mar 14 10:06 start_atlas.sh
[2026-03-14 12:09:38] -rw------- 1 boinc boinc 188636499 Mar 14 12:08 HITS.pool.root.1
[2026-03-14 12:09:38] -rw------- 1 boinc boinc   1372160 Mar 14 12:09 result.tar.gz
12:09:40 (2658064): run_atlas exited; CPU time 14045.945721
12:09:40 (2658064): called boinc_finish(0)

</stderr_txt>
]]>

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