Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:57:25 (16867): wrapper (7.7.26015): starting
08:57:25 (16867): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 08:57:25] Arguments: --nthreads 8
[2026-03-14 08:57:25] Threads: 8
[2026-03-14 08:57:25] Checking for CVMFS
[2026-03-14 08:57:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 08:57:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 08:57:27] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 08:57:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 08:57:28] 2.11.2.0 18409 127303 137412 157270 2 53 20911941 25165824 4834 130560 154 37932932 99.820 28212195 971 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 08:57:28] CVMFS is ok
[2026-03-14 08:57:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 08:57:28] Checking for apptainer binary...
[2026-03-14 08:57:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 08:57:28] Running /usr/bin/apptainer --version
[2026-03-14 08:57:29] apptainer version 1.3.2-1.el7
[2026-03-14 08:57:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 08:57:46] cg-vwn403.simple-grid.lan
[2026-03-14 08:57:46] apptainer works
[2026-03-14 08:57:46] Set ATHENA_PROC_NUMBER=8
[2026-03-14 08:57:46] Set ATHENA_CORE_NUMBER=8
[2026-03-14 08:57:46] Starting ATLAS job with PandaID=7053819318
[2026-03-14 08:57:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 13:58:02]  *** The last 200 lines of the pilot log: ***
[2026-03-14 13:58:02] 2026-03-14 12:56:54,525 | INFO     | job 7053819318 has finished - writing final server update
[2026-03-14 13:58:02] 2026-03-14 12:56:54,525 | INFO     | total number of processed events: 400 (read)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,527 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7053819318/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,528 | INFO     | extracted standard info from prmon json
[2026-03-14 13:58:02] 2026-03-14 12:56:54,528 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 13:58:02] 2026-03-14 12:56:54,528 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 13:58:02] 2026-03-14 12:56:54,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 13:58:02] 2026-03-14 12:56:54,529 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 13:58:02] 2026-03-14 12:56:54,535 | INFO     | fitting pss+swap vs Time
[2026-03-14 13:58:02] 2026-03-14 12:56:54,536 | INFO     | sum of square deviations: 7178069470.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,539 | INFO     | sum of deviations: 101993917779.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,539 | INFO     | mean x: 1773484320.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,539 | INFO     | mean y: 2452836.831578947
[2026-03-14 13:58:02] 2026-03-14 12:56:54,539 | INFO     | intersect: -25197165900.826824
[2026-03-14 13:58:02] 2026-03-14 12:56:54,540 | INFO     | chi2: 5.502026402430164
[2026-03-14 13:58:02] 2026-03-14 12:56:54,540 | INFO     | sum of square deviations: 6806862510.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,546 | INFO     | sum of deviations: 119015717465.5
[2026-03-14 13:58:02] 2026-03-14 12:56:54,547 | INFO     | mean x: 1773484167.5
[2026-03-14 13:58:02] 2026-03-14 12:56:54,547 | INFO     | mean y: 2459719.4892857145
[2026-03-14 13:58:02] 2026-03-14 12:56:54,547 | INFO     | intersect: -31006318597.779457
[2026-03-14 13:58:02] 2026-03-14 12:56:54,547 | INFO     | chi2: 4.761705349998645
[2026-03-14 13:58:02] 2026-03-14 12:56:54,547 | INFO     | current chi2=4.761705349998645 (change=13.455425297569084 %)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,548 | INFO     | right removable region: 279
[2026-03-14 13:58:02] 2026-03-14 12:56:54,548 | INFO     | sum of square deviations: 6806862510.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,550 | INFO     | sum of deviations: 8196978303.499992
[2026-03-14 13:58:02] 2026-03-14 12:56:54,551 | INFO     | mean x: 1773484472.5
[2026-03-14 13:58:02] 2026-03-14 12:56:54,551 | INFO     | mean y: 2491332.2321428573
[2026-03-14 13:58:02] 2026-03-14 12:56:54,551 | INFO     | intersect: -2133178915.4509747
[2026-03-14 13:58:02] 2026-03-14 12:56:54,552 | INFO     | chi2: 1.358867012990257
[2026-03-14 13:58:02] 2026-03-14 12:56:54,552 | INFO     | current chi2=1.358867012990257 (change=75.30242653161268 %)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,552 | INFO     | sum of square deviations: 6448679050.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,555 | INFO     | sum of deviations: -19394123023.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,555 | INFO     | mean x: 1773484625.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,555 | INFO     | mean y: 2503014.690909091
[2026-03-14 13:58:02] 2026-03-14 12:56:54,555 | INFO     | intersect: 5336181234.67443
[2026-03-14 13:58:02] 2026-03-14 12:56:54,556 | INFO     | chi2: 0.8500705227922241
[2026-03-14 13:58:02] 2026-03-14 12:56:54,556 | INFO     | current chi2=0.8500705227922241 (change=37.442699346891935 %)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,557 | INFO     | sum of square deviations: 6103286527.5
[2026-03-14 13:58:02] 2026-03-14 12:56:54,559 | INFO     | sum of deviations: -27718827549.000008
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | mean x: 1773484777.5
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | mean y: 2506667.8962962963
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | intersect: 8057006237.398795
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | chi2: 0.7990434645512409
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | current chi2=0.7990434645512409 (change=6.00268529173024 %)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,560 | INFO     | left removable region: 30
[2026-03-14 13:58:02] 2026-03-14 12:56:54,561 | INFO     | sum of square deviations: 4787066500.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,563 | INFO     | sum of deviations: -8529235208.000002
[2026-03-14 13:58:02] 2026-03-14 12:56:54,563 | INFO     | mean x: 1773485052.0
[2026-03-14 13:58:02] 2026-03-14 12:56:54,563 | INFO     | mean y: 2514547.514056225
[2026-03-14 13:58:02] 2026-03-14 12:56:54,564 | INFO     | intersect: 3162376886.251175
[2026-03-14 13:58:02] 2026-03-14 12:56:54,564 | INFO     | chi2: 0.012377530461897632
[2026-03-14 13:58:02] 2026-03-14 12:56:54,564 | INFO     | current memory leak: -1.78 B/s (using 249 data points, chi2=0.01)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,565 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-14 13:58:02] 2026-03-14 12:56:54,565 | INFO     | ..............................
[2026-03-14 13:58:02] 2026-03-14 12:56:54,565 | INFO     | . Timing measurements:
[2026-03-14 13:58:02] 2026-03-14 12:56:54,565 | INFO     | . get job = 0 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . initial setup = 100 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . payload setup = 123 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . stage-in = 0 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . payload execution = 17463 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . stage-out = 3 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | . log creation = 1 s
[2026-03-14 13:58:02] 2026-03-14 12:56:54,566 | INFO     | ..............................
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | 
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | job summary report
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | --------------------------------------------------
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | PanDA job id: 7053819318
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | task id: 48967085
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | errors: (none)
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 13:58:02] 2026-03-14 12:56:55,086 | INFO     | pilot state: finished 
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | transexitcode: 0
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | exeerrorcode: 0
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | exeerrordiag: 
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | exitcode: 0
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | exitmsg: OK
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | cpuconsumptiontime: 68148 s
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | nevents: 400
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | neventsw: 0
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | pid: 25547
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | pgrp: 25547
[2026-03-14 13:58:02] 2026-03-14 12:56:55,087 | INFO     | corecount: 8
[2026-03-14 13:58:02] 2026-03-14 12:56:55,088 | INFO     | event service: False
[2026-03-14 13:58:02] 2026-03-14 12:56:55,088 | INFO     | sizes: {0: 2279703, 1: 2280160, 2: 2280248, 12: 2280248, 17591: 2312261, 17596: 2321259, 17598: 2321443, 17599: 2321637}
[2026-03-14 13:58:02] 2026-03-14 12:56:55,088 | INFO     | --------------------------------------------------
[2026-03-14 13:58:02] 2026-03-14 12:56:55,088 | INFO     | 
[2026-03-14 13:58:02] 2026-03-14 12:56:55,088 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-14 13:58:02] 2026-03-14 12:56:55,177 | INFO     | time since job start (17611s) is within the limit (345600.0s)
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,546 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,547 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 13:58:02] 2026-03-14 12:56:55,548 | INFO     | job 7053819318 has completed (purged errors)
[2026-03-14 13:58:02] 2026-03-14 12:56:55,549 | INFO     | overall cleanup function is called
[2026-03-14 13:58:02] 2026-03-14 12:56:56,558 | INFO     | --- collectZombieJob: --- 10, [25547]
[2026-03-14 13:58:02] 2026-03-14 12:56:56,558 | INFO     | zombie collector waiting for pid 25547
[2026-03-14 13:58:02] 2026-03-14 12:56:56,558 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 13:58:02] 2026-03-14 12:56:56,558 | INFO     | collected zombie processes
[2026-03-14 13:58:02] 2026-03-14 12:56:56,558 | INFO     | will attempt to kill all subprocesses of pid=25547
[2026-03-14 13:58:02] 2026-03-14 12:56:56,673 | INFO     | process IDs to be killed: [25547] (in reverse order)
[2026-03-14 13:58:02] 2026-03-14 12:56:57,107 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 13:58:02] 2026-03-14 12:56:57,108 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 13:58:02] 2026-03-14 12:56:57,111 | INFO     | did not find any defunct processes belonging to 25547
[2026-03-14 13:58:02] 2026-03-14 12:56:57,114 | INFO     | did not find any defunct processes belonging to 25547
[2026-03-14 13:58:02] 2026-03-14 12:56:57,114 | INFO     | ready for new job
[2026-03-14 13:58:02] 2026-03-14 12:56:57,114 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 13:58:02] 2026-03-14 12:56:57,117 | INFO     | **************************************
[2026-03-14 13:58:02] 2026-03-14 12:56:57,117 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 13:58:02] 2026-03-14 12:56:57,117 | INFO     | **************************************
[2026-03-14 13:58:02] 2026-03-14 12:56:57,117 | INFO     | 
[2026-03-14 13:58:02] 2026-03-14 12:56:57,118 | INFO     | pilot is running in a VM
[2026-03-14 13:58:02] 2026-03-14 12:56:57,118 | INFO     | architecture information:
[2026-03-14 13:58:02] 2026-03-14 12:56:57,119 | INFO     | executing command: cat /etc/os-release
[2026-03-14 13:58:02] 2026-03-14 12:56:57,139 | INFO     | cat /etc/os-release:
[2026-03-14 13:58:02] NAME="CentOS Linux"
[2026-03-14 13:58:02] VERSION="7 (Core)"
[2026-03-14 13:58:02] ID="centos"
[2026-03-14 13:58:02] ID_LIKE="rhel fedora"
[2026-03-14 13:58:02] VERSION_ID="7"
[2026-03-14 13:58:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 13:58:02] ANSI_COLOR="0;31"
[2026-03-14 13:58:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 13:58:02] HOME_URL="https://www.centos.org/"
[2026-03-14 13:58:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 13:58:02] 
[2026-03-14 13:58:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 13:58:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 13:58:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 13:58:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 13:58:02] 
[2026-03-14 13:58:02] 2026-03-14 12:56:57,139 | INFO     | **************************************
[2026-03-14 13:58:02] 2026-03-14 12:56:57,643 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-14 13:58:02] 2026-03-14 12:56:57,713 | INFO     | sufficient remaining disk space (494116274176 B)
[2026-03-14 13:58:02] 2026-03-14 12:56:57,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 13:58:02] 2026-03-14 12:56:57,713 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 13:58:02] 2026-03-14 12:56:57,713 | INFO     | update_server=False
[2026-03-14 13:58:02] 2026-03-14 12:56:57,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 13:58:02] 2026-03-14 12:56:57,715 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 13:58:02] 2026-03-14 12:56:57,715 | INFO     | aborting loop
[2026-03-14 13:58:02] 2026-03-14 12:56:57,731 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 13:58:02] 2026-03-14 12:56:57,779 | INFO     | all job control threads have been joined
[2026-03-14 13:58:02] 2026-03-14 12:56:57,827 | INFO     | all data control threads have been joined
[2026-03-14 13:58:02] 2026-03-14 12:56:58,664 | INFO     | all payload control threads have been joined
[2026-03-14 13:58:02] 2026-03-14 12:56:58,720 | INFO     | [job] retrieve thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:58,721 | INFO     | [job] job monitor thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:58,785 | INFO     | [job] control thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:58,833 | INFO     | [data] control thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:58,907 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,033 | INFO     | [data] copytool_in thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,217 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,535 | INFO     | [job] validate thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,596 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,670 | INFO     | [payload] control thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,688 | INFO     | [payload] validate_post thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 13:58:02] 2026-03-14 12:56:59,738 | INFO     | [data] copytool_out thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,900 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:56:59,926 | INFO     | [payload] failed_post thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:57:00,267 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 13:58:02] 2026-03-14 12:57:00,738 | INFO     | [job] queue monitor thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:57:04,276 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 13:58:02] 2026-03-14 12:57:28,366 | INFO     | PID=21033 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 13:58:02] 2026-03-14 12:57:28,367 | INFO     | .. there are 9 such processes running
[2026-03-14 13:58:02] 2026-03-14 12:57:28,367 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 13:58:02] 2026-03-14 12:57:28,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 13:58:02] 2026-03-14 12:57:28,367 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 13:58:02] 2026-03-14 12:57:53,959 | INFO     | [monitor] cgroup control has ended
[2026-03-14 13:58:02] 2026-03-14 12:57:54,435 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139914987775808)>', '<ExcThread(monitor, started 139914322634496)>']
[2026-03-14 13:58:02] 2026-03-14 12:57:54,523 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 13:58:02] 2026-03-14 12:57:54,524 | INFO     | [monitor] control thread has ended
[2026-03-14 13:58:02] 2026-03-14 12:57:59,461 | INFO     | all workflow threads have been joined
[2026-03-14 13:58:02] 2026-03-14 12:57:59,461 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 13:58:02] 2026-03-14 12:57:59,461 | INFO     | traces error code: 0
[2026-03-14 13:58:02] 2026-03-14 12:57:59,461 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 13:58:02] 2026-03-14 12:57:59,683 [wrapper] ==== pilot stdout END ====
[2026-03-14 13:58:02] 2026-03-14 12:57:59,786 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 13:58:02] 2026-03-14 12:57:59,854 [wrapper] pilotpid: 21033
[2026-03-14 13:58:02] 2026-03-14 12:57:59,938 [wrapper] Pilot exit status: 0
[2026-03-14 13:58:02] 2026-03-14 12:58:00,394 [wrapper] pandaids: 7053819318
[2026-03-14 13:58:02] 2026-03-14 12:58:01,198 [wrapper] cleanup supervisor_pilot  1981 21034
[2026-03-14 13:58:02] 2026-03-14 12:58:01,303 [wrapper] Test setup, not cleaning
[2026-03-14 13:58:02] 2026-03-14 12:58:01,367 [wrapper] apfmon messages muted
[2026-03-14 13:58:02] 2026-03-14 12:58:01,403 [wrapper] ==== wrapper stdout END ====
[2026-03-14 13:58:02] 2026-03-14 12:58:01,475 [wrapper] ==== wrapper stderr END ====
[2026-03-14 13:58:02]  *** Error codes and diagnostics ***
[2026-03-14 13:58:02]     "exeErrorCode": 0,
[2026-03-14 13:58:02]     "exeErrorDiag": "",
[2026-03-14 13:58:02]     "pilotErrorCode": 0,
[2026-03-14 13:58:02]     "pilotErrorDiag": "",
[2026-03-14 13:58:02]  *** Listing of results directory ***
[2026-03-14 13:58:02] total 413624
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc    585013 Mar 13 19:06 pilot3.tar.gz
[2026-03-14 13:58:02] -rwx------. 1 boinc boinc     36322 Mar 13 19:07 runpilot2-wrapper.sh
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc      5111 Mar 13 19:08 queuedata.json
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc       100 Mar 14 08:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 13:58:02] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 08:57 run_atlas
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc       105 Mar 14 08:57 job.xml
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc 212349129 Mar 14 08:57 EVNT.48967083._000678.pool.root.1
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:57 start_atlas.sh
[2026-03-14 13:58:02] drwxrwx--x. 2 boinc boinc        68 Mar 14 08:57 shared
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc    597526 Mar 14 08:57 input.tar.gz
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc      6391 Mar 14 08:57 init_data.xml
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc         0 Mar 14 08:57 boinc_lockfile
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc      2563 Mar 14 08:57 pandaJob.out
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc       415 Mar 14 09:03 workernode_map.json
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc   1004579 Mar 14 09:03 agis_schedconf.cvmfs.json
[2026-03-14 13:58:02] drwx------. 5 boinc boinc      4096 Mar 14 09:03 pilot3
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc 201376486 Mar 14 13:55 HITS.48967085._021430.pool.root.1
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc       530 Mar 14 13:55 boinc_task_state.xml
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc        95 Mar 14 13:56 pilot_heartbeat.json
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc      1012 Mar 14 13:56 memory_monitor_summary.json
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc   1511579 Mar 14 13:56 agis_ddmendpoints.agis.ALL.json
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc    502872 Mar 14 13:56 log.48967085._021430.job.log.tgz.1
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc      6318 Mar 14 13:56 heartbeat.json
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc      8192 Mar 14 13:57 boinc_mmap_file
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc        28 Mar 14 13:57 wrapper_checkpoint.txt
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc      4880 Mar 14 13:57 pilotlog.txt
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc   2447340 Mar 14 13:58 log.48967085._021430.job.log.1
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc       357 Mar 14 13:58 output.list
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc       620 Mar 14 13:58 runtime_log
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc   2969600 Mar 14 13:58 result.tar.gz
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc       656 Mar 14 13:58 TaSMDmH6LL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmDpnLDmahJQGn.diag
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc      8816 Mar 14 13:58 runtime_log.err
[2026-03-14 13:58:02] -rw-r--r--. 1 boinc boinc     20484 Mar 14 13:58 stderr.txt
[2026-03-14 13:58:02] HITS file was successfully produced:
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc 201376486 Mar 14 13:55 shared/HITS.pool.root.1
[2026-03-14 13:58:02]  *** Contents of shared directory: ***
[2026-03-14 13:58:02] total 407536
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc 212349129 Mar 14 08:57 ATLAS.root_0
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc     15845 Mar 14 08:57 start_atlas.sh
[2026-03-14 13:58:02] -rw-r--r--. 2 boinc boinc    597526 Mar 14 08:57 input.tar.gz
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc 201376486 Mar 14 13:55 HITS.pool.root.1
[2026-03-14 13:58:02] -rw-------. 1 boinc boinc   2969600 Mar 14 13:58 result.tar.gz
13:58:03 (16867): run_atlas exited; CPU time 68416.649418
13:58:03 (16867): called boinc_finish(0)

</stderr_txt>
]]>

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