Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
08:31:27 (1670820): wrapper (7.7.26015): starting
08:31:27 (1670820): wrapper: running run_atlas (--nthreads 2)
[2026-03-14 08:31:27] Arguments: --nthreads 2
[2026-03-14 08:31:27] Threads: 2
[2026-03-14 08:31:27] Checking for CVMFS
[2026-03-14 08:31:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 08:31:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 08:31:28] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 08:31:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 08:31:28] 2.9.2.0 12722 17095 61612 157270 0 49 32411676 36864001 0 130560 0 4861724 99.976 635731 6071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 08:31:28] CVMFS is ok
[2026-03-14 08:31:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 08:31:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 08:31:28] Further information can be found at the LHC@home message board.
[2026-03-14 08:31:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 08:31:28] Checking for apptainer binary...
[2026-03-14 08:31:28] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 08:31:28] Running /usr/bin/apptainer --version
[2026-03-14 08:31:28] apptainer version 1.4.1-1.1
[2026-03-14 08:31:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 08:31:28] thA334a
[2026-03-14 08:31:28] apptainer works
[2026-03-14 08:31:28] Set ATHENA_PROC_NUMBER=2
[2026-03-14 08:31:28] Set ATHENA_CORE_NUMBER=2
[2026-03-14 08:31:28] Starting ATLAS job with PandaID=7044752619
[2026-03-14 08:31:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 10:31:02]  *** The last 200 lines of the pilot log: ***
[2026-03-14 10:31:02] 2026-03-14 09:30:30,170 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,170 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | job 7044752619 has completed (purged errors)
[2026-03-14 10:31:02] 2026-03-14 09:30:30,171 | INFO     | overall cleanup function is called
[2026-03-14 10:31:02] 2026-03-14 09:30:31,177 | INFO     | --- collectZombieJob: --- 10, [1679269]
[2026-03-14 10:31:02] 2026-03-14 09:30:31,177 | INFO     | zombie collector waiting for pid 1679269
[2026-03-14 10:31:02] 2026-03-14 09:30:31,178 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 10:31:02] 2026-03-14 09:30:31,178 | INFO     | collected zombie processes
[2026-03-14 10:31:02] 2026-03-14 09:30:31,178 | INFO     | will attempt to kill all subprocesses of pid=1679269
[2026-03-14 10:31:02] 2026-03-14 09:30:31,210 | INFO     | process IDs to be killed: [1679269] (in reverse order)
[2026-03-14 10:31:02] 2026-03-14 09:30:31,231 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 10:31:02] 2026-03-14 09:30:31,231 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 10:31:02] 2026-03-14 09:30:31,232 | INFO     | did not find any defunct processes belonging to 1679269
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | did not find any defunct processes belonging to 1679269
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | ready for new job
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | **************************************
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | **************************************
[2026-03-14 10:31:02] 2026-03-14 09:30:31,233 | INFO     | 
[2026-03-14 10:31:02] 2026-03-14 09:30:31,234 | INFO     | architecture information:
[2026-03-14 10:31:02] 2026-03-14 09:30:31,234 | INFO     | executing command: cat /etc/os-release
[2026-03-14 10:31:02] 2026-03-14 09:30:31,242 | INFO     | cat /etc/os-release:
[2026-03-14 10:31:02] NAME="CentOS Linux"
[2026-03-14 10:31:02] VERSION="7 (Core)"
[2026-03-14 10:31:02] ID="centos"
[2026-03-14 10:31:02] ID_LIKE="rhel fedora"
[2026-03-14 10:31:02] VERSION_ID="7"
[2026-03-14 10:31:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 10:31:02] ANSI_COLOR="0;31"
[2026-03-14 10:31:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 10:31:02] HOME_URL="https://www.centos.org/"
[2026-03-14 10:31:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 10:31:02] 
[2026-03-14 10:31:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 10:31:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 10:31:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 10:31:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 10:31:02] 
[2026-03-14 10:31:02] 2026-03-14 09:30:31,242 | INFO     | **************************************
[2026-03-14 10:31:02] 2026-03-14 09:30:31,746 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | INFO     | sufficient remaining disk space (489954476032 B)
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | INFO     | update_server=False
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 10:31:02] 2026-03-14 09:30:31,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:31:02] 2026-03-14 09:30:32,100 | INFO     | all payload control threads have been joined
[2026-03-14 10:31:02] 2026-03-14 09:30:32,430 | INFO     | all data control threads have been joined
[2026-03-14 10:31:02] 2026-03-14 09:30:32,433 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 10:31:02] 2026-03-14 09:30:32,433 | INFO     | aborting loop
[2026-03-14 10:31:02] 2026-03-14 09:30:32,764 | INFO     | [job] retrieve thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:32,765 | INFO     | [job] queue monitor thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:32,840 | INFO     | [payload] failed_post thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:32,869 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:32,977 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,007 | INFO     | [data] copytool_in thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,106 | INFO     | [payload] control thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,436 | INFO     | [data] control thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,439 | INFO     | [job] job monitor thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,440 | INFO     | all job control threads have been joined
[2026-03-14 10:31:02] 2026-03-14 09:30:33,455 | INFO     | [payload] validate_post thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,694 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,764 | INFO     | [data] copytool_out thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:33,866 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 10:31:02] 2026-03-14 09:30:34,179 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:34,243 | INFO     | [job] validate thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:34,446 | INFO     | [job] control thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:37,873 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 10:31:02] 2026-03-14 09:30:55,905 | INFO     | [monitor] cgroup control has ended
[2026-03-14 10:31:02] 2026-03-14 09:30:56,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139963630708544)>', '<ExcThread(monitor, started 139962775234304)>']
[2026-03-14 10:31:02] 2026-03-14 09:31:01,426 | INFO     | 7129s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-14 10:31:02] 2026-03-14 09:31:01,502 | INFO     | all workflow threads have been joined
[2026-03-14 10:31:02] 2026-03-14 09:31:01,503 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 10:31:02] 2026-03-14 09:31:01,503 | INFO     | traces error code: 0
[2026-03-14 10:31:02] 2026-03-14 09:31:01,504 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | INFO     | PID=1674857 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 10:31:02] 2026-03-14 09:31:02,472 | INFO     | [monitor] control thread has ended
[2026-03-14 10:31:02] 2026-03-14 09:31:02,512 [wrapper] ==== pilot stdout END ====
[2026-03-14 10:31:02] 2026-03-14 09:31:02,514 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 10:31:02] 2026-03-14 09:31:02,517 [wrapper] pilotpid: 1674857
[2026-03-14 10:31:02] 2026-03-14 09:31:02,519 [wrapper] Pilot exit status: 0
[2026-03-14 10:31:02] 2026-03-14 09:31:02,525 [wrapper] pandaids: 7044752619
[2026-03-14 10:31:02] 2026-03-14 09:31:02,538 [wrapper] cleanup supervisor_pilot 1684093 1674858
[2026-03-14 10:31:02] 2026-03-14 09:31:02,540 [wrapper] Test setup, not cleaning
[2026-03-14 10:31:02] 2026-03-14 09:31:02,542 [wrapper] apfmon messages muted
[2026-03-14 10:31:02] 2026-03-14 09:31:02,545 [wrapper] ==== wrapper stdout END ====
[2026-03-14 10:31:02] 2026-03-14 09:31:02,547 [wrapper] ==== wrapper stderr END ====
[2026-03-14 10:31:02]  *** Error codes and diagnostics ***
[2026-03-14 10:31:02]     "exeErrorCode": 0,
[2026-03-14 10:31:02]     "exeErrorDiag": "",
[2026-03-14 10:31:02]     "pilotErrorCode": 0,
[2026-03-14 10:31:02]     "pilotErrorDiag": "",
[2026-03-14 10:31:02]  *** Listing of results directory ***
[2026-03-14 10:31:02] total 622796
[2026-03-14 10:31:02] -rwx------ 1 boinc boinc     36322 Mar 13 18:10 runpilot2-wrapper.sh
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc      5111 Mar 13 18:12 queuedata.json
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc    585013 Mar 13 18:12 pilot3.tar.gz
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc       100 Mar 14 08:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 10:31:02] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 08:31 run_atlas
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc       105 Mar 14 08:31 job.xml
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc 444299013 Mar 14 08:31 EVNT.46701403._001644.pool.root.1
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc    597535 Mar 14 08:31 input.tar.gz
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc     15845 Mar 14 08:31 start_atlas.sh
[2026-03-14 10:31:02] drwxrwx--x 2 boinc boinc      4096 Mar 14 08:31 shared
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc         0 Mar 14 08:31 boinc_setup_complete
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc      6206 Mar 14 08:31 init_data.xml
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc         0 Mar 14 08:31 boinc_lockfile
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc      2563 Mar 14 08:31 pandaJob.out
[2026-03-14 10:31:02] -rw------- 1 boinc boinc   1004579 Mar 14 08:31 agis_schedconf.cvmfs.json
[2026-03-14 10:31:02] -rw------- 1 boinc boinc   1511579 Mar 14 08:31 agis_ddmendpoints.agis.ALL.json
[2026-03-14 10:31:02] -rw------- 1 boinc boinc       417 Mar 14 08:31 workernode_map.json
[2026-03-14 10:31:02] drwx------ 5 boinc boinc      4096 Mar 14 08:31 pilot3
[2026-03-14 10:31:02] -rw------- 1 boinc boinc 186935065 Mar 14 10:30 HITS.48955010._032481.pool.root.1
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc       530 Mar 14 10:30 boinc_task_state.xml
[2026-03-14 10:31:02] -rw------- 1 boinc boinc        95 Mar 14 10:30 pilot_heartbeat.json
[2026-03-14 10:31:02] -rw------- 1 boinc boinc      1017 Mar 14 10:30 memory_monitor_summary.json
[2026-03-14 10:31:02] -rw------- 1 boinc boinc    271153 Mar 14 10:30 log.48955010._032481.job.log.tgz.1
[2026-03-14 10:31:02] -rw------- 1 boinc boinc      6302 Mar 14 10:30 heartbeat.json
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc      8192 Mar 14 10:30 boinc_mmap_file
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc        27 Mar 14 10:30 wrapper_checkpoint.txt
[2026-03-14 10:31:02] -rw------- 1 boinc boinc       747 Mar 14 10:31 pilotlog.txt
[2026-03-14 10:31:02] -rw------- 1 boinc boinc   1023316 Mar 14 10:31 log.48955010._032481.job.log.1
[2026-03-14 10:31:02] -rw------- 1 boinc boinc       357 Mar 14 10:31 output.list
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc       620 Mar 14 10:31 runtime_log
[2026-03-14 10:31:02] -rw------- 1 boinc boinc   1310720 Mar 14 10:31 result.tar.gz
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc      8901 Mar 14 10:31 runtime_log.err
[2026-03-14 10:31:02] -rw------- 1 boinc boinc       658 Mar 14 10:31 lkhNDmLDLL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmEgnLDm5tlDln.diag
[2026-03-14 10:31:02] -rw-r--r-- 1 boinc boinc     11654 Mar 14 10:31 stderr.txt
[2026-03-14 10:31:02] HITS file was successfully produced:
[2026-03-14 10:31:02] -rw------- 1 boinc boinc 186935065 Mar 14 10:30 shared/HITS.pool.root.1
[2026-03-14 10:31:02]  *** Contents of shared directory: ***
[2026-03-14 10:31:02] total 618332
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc 444299013 Mar 14 08:31 ATLAS.root_0
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc    597535 Mar 14 08:31 input.tar.gz
[2026-03-14 10:31:02] -rw-r--r-- 2 boinc boinc     15845 Mar 14 08:31 start_atlas.sh
[2026-03-14 10:31:02] -rw------- 1 boinc boinc 186935065 Mar 14 10:30 HITS.pool.root.1
[2026-03-14 10:31:02] -rw------- 1 boinc boinc   1310720 Mar 14 10:31 result.tar.gz
10:31:03 (1670820): run_atlas exited; CPU time 13633.723026
10:31:03 (1670820): called boinc_finish(0)

</stderr_txt>
]]>

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