Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:26:15 (5185): wrapper (7.7.26015): starting
00:26:15 (5185): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 00:26:15] Arguments: --nthreads 8
[2026-03-14 00:26:15] Threads: 8
[2026-03-14 00:26:15] Checking for CVMFS
[2026-03-14 00:26:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 00:26:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 00:26:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 00:26:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 00:26:15] 2.11.0.0 4712 143433 80988 157258 1 1 2313988 4096000 0 130560 1 4178443 98.963 9409693 381 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-03-14 00:26:15] CVMFS is ok
[2026-03-14 00:26:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 00:26:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 00:26:15] Further information can be found at the LHC@home message board.
[2026-03-14 00:26:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 00:26:15] Checking for apptainer binary...
[2026-03-14 00:26:15] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-03-14 00:26:15] apptainer is not installed, using version from CVMFS
[2026-03-14 00:26:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 00:27:36] WARNING: Environment variable TMPDIR already has value [/tmp/job_11306262/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node041
[2026-03-14 00:27:36] apptainer works
[2026-03-14 00:27:36] Set ATHENA_PROC_NUMBER=8
[2026-03-14 00:27:36] Set ATHENA_CORE_NUMBER=8
[2026-03-14 00:27:36] Starting ATLAS job with PandaID=7042020641
[2026-03-14 00:27:36] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11306262/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 02:07:05]  *** The last 200 lines of the pilot log: ***
[2026-03-14 02:07:05]  protocol_id=None
[2026-03-14 02:07:05]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 02:07:05]  replicas=None
[2026-03-14 02:07:05]  scope=mc23_13p6TeV
[2026-03-14 02:07:05]  status=None
[2026-03-14 02:07:05]  status_code=0
[2026-03-14 02:07:05]  storage_token=
[2026-03-14 02:07:05]  surl=/tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/log.48929183._000108.job.log.tgz.1
[2026-03-14 02:07:05]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/09/log.48929183._000108.job.log.tgz.1
[2026-03-14 02:07:05]  workdir=None
[2026-03-14 02:07:05] ]
[2026-03-14 02:07:05] 2026-03-14 01:05:52,353 | INFO     | transferring file log.48929183._000108.job.log.tgz.1 from /tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/log.48929183._000108.job.log.tgz.1 to /tmp/j
[2026-03-14 02:07:05] 2026-03-14 01:05:52,353 | INFO     | executing command: /usr/bin/env mv /tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/log.48929183._000108.job.log.tgz.1 /tmp/job_11306262/atlas/pilot/sl
[2026-03-14 02:07:05] 2026-03-14 01:05:52,362 | INFO     | adding to output.list: log.48929183._000108.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/09/log.48929183._000108.job.log.tg
[2026-03-14 02:07:05] 2026-03-14 01:05:52,362 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 02:07:05] 2026-03-14 01:05:52,362 | INFO     | summary of transferred files:
[2026-03-14 02:07:05] 2026-03-14 01:05:52,362 | INFO     |  -- lfn=log.48929183._000108.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 02:07:05] 2026-03-14 01:05:52,362 | INFO     | stage-out finished correctly
[2026-03-14 02:07:05] 2026-03-14 01:05:53,319 | INFO     | time since job start (5763s) is within the limit (349056.0s)
[2026-03-14 02:07:05] 2026-03-14 01:05:54,465 | INFO     | PID=10701 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 02:07:05] 2026-03-14 01:05:54,465 | INFO     | .. there are 8 such processes running
[2026-03-14 02:07:05] 2026-03-14 01:05:54,631 | WARNING  | process 17127 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 02:07:05] 2026-03-14 01:05:54,631 | INFO     | using path: /tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 02:07:05] 2026-03-14 01:05:54,743 | INFO     | number of running child processes to parent process 17127: 1
[2026-03-14 02:07:05] 2026-03-14 01:05:54,743 | INFO     | maximum number of monitored processes: 9
[2026-03-14 02:07:05] 2026-03-14 01:05:55,465 | INFO     | time since job start (5765s) is within the limit (349056.0s)
[2026-03-14 02:07:05] 2026-03-14 01:05:55,737 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 02:07:05] 2026-03-14 01:05:56,836 | INFO     | job 7042020641 has state=finished
[2026-03-14 02:07:05] 2026-03-14 01:05:56,836 | INFO     | preparing for final server update for job 7042020641 in state='finished'
[2026-03-14 02:07:05] 2026-03-14 01:05:57,250 | INFO     | monitor loop #490: job 0:7042020641 is in state 'finished'
[2026-03-14 02:07:05] 2026-03-14 01:05:57,250 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,410 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,410 | INFO     | reading metadata from: /tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/jobReport.json
[2026-03-14 02:07:05] 2026-03-14 01:05:57,411 | INFO     | added worker_node to metadata from /tmp/job_11306262/atlas/pilot/slots/0/workernode_map.json
[2026-03-14 02:07:05] 2026-03-14 01:05:57,412 | INFO     | this job has now completed (state=finished)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,412 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,412 | INFO     | log transfer has been attempted: DONE
[2026-03-14 02:07:05] 2026-03-14 01:05:57,412 | INFO     | job 7042020641 has finished - writing final server update
[2026-03-14 02:07:05] 2026-03-14 01:05:57,412 | INFO     | total number of processed events: 400 (read)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | INFO     | using path: /tmp/job_11306262/atlas/pilot/slots/0/PanDA_Pilot-7042020641/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | INFO     | extracted standard info from prmon json
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 02:07:05] 2026-03-14 01:05:57,430 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 02:07:05] 2026-03-14 01:05:57,431 | INFO     | fitting pss+swap vs Time
[2026-03-14 02:07:05] 2026-03-14 01:05:57,431 | INFO     | sum of square deviations: 190403570.0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | sum of deviations: 72085448626.00002
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | mean x: 1773447646.0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | mean y: 2184766.117647059
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | intersect: -671412585327.9181
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | chi2: 10.198565136703758
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | current memory leak: 378.59 B/s (using 85 data points, chi2=10.20)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | could have reported an average CPU frequency of 2364 MHz (7 samples)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | ..............................
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . Timing measurements:
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . get job = 0 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . initial setup = 11 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . payload setup = 171 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . stage-in = 0 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . payload execution = 5575 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . stage-out = 0 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | . log creation = 0 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,432 | INFO     | ..............................
[2026-03-14 02:07:05] 2026-03-14 01:05:57,476 | INFO     | time since job start (5767s) is within the limit (349056.0s)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | 
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | job summary report
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | --------------------------------------------------
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | PanDA job id: 7042020641
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | task id: 48929183
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | errors: (none)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 02:07:05] 2026-03-14 01:05:57,479 | INFO     | pilot state: finished 
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | transexitcode: 0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | exeerrorcode: 0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | exeerrordiag: 
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | exitcode: 0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | exitmsg: OK
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | cpuconsumptiontime: 27787 s
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | nevents: 400
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | neventsw: 0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | pid: 17127
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | pgrp: 17127
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | corecount: 8
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | event service: False
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | sizes: {0: 2280117, 1: 2280379, 11: 2280407, 5750: 2316099, 5754: 2316099, 5756: 2316293}
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | --------------------------------------------------
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | 
[2026-03-14 02:07:05] 2026-03-14 01:05:57,480 | INFO     | executing command: ls -lF /tmp/job_11306262/atlas/pilot/slots/0
[2026-03-14 02:07:05] 2026-03-14 01:05:57,488 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | job 7042020641 has completed (purged errors)
[2026-03-14 02:07:05] 2026-03-14 01:05:57,489 | INFO     | overall cleanup function is called
[2026-03-14 02:07:05] 2026-03-14 01:05:58,495 | INFO     | --- collectZombieJob: --- 10, [17127]
[2026-03-14 02:07:05] 2026-03-14 01:05:58,495 | INFO     | zombie collector waiting for pid 17127
[2026-03-14 02:07:05] 2026-03-14 01:05:58,495 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 02:07:05] 2026-03-14 01:05:58,495 | INFO     | collected zombie processes
[2026-03-14 02:07:05] 2026-03-14 01:05:58,495 | INFO     | will attempt to kill all subprocesses of pid=17127
[2026-03-14 02:07:05] 2026-03-14 01:05:58,609 | INFO     | process IDs to be killed: [17127] (in reverse order)
[2026-03-14 02:07:05] 2026-03-14 01:05:58,649 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 02:07:05] 2026-03-14 01:05:58,649 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 02:07:05] 2026-03-14 01:05:58,654 | INFO     | did not find any defunct processes belonging to 17127
[2026-03-14 02:07:05] 2026-03-14 01:05:58,657 | INFO     | did not find any defunct processes belonging to 17127
[2026-03-14 02:07:05] 2026-03-14 01:05:58,657 | INFO     | ready for new job
[2026-03-14 02:07:05] 2026-03-14 01:05:58,657 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 02:07:05] 2026-03-14 01:05:58,658 | INFO     | **************************************
[2026-03-14 02:07:05] 2026-03-14 01:05:58,658 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-14 02:07:05] 2026-03-14 01:05:58,658 | INFO     | **************************************
[2026-03-14 02:07:05] 2026-03-14 01:05:58,658 | INFO     | 
[2026-03-14 02:07:05] 2026-03-14 01:05:58,671 | INFO     | architecture information:
[2026-03-14 02:07:05] 2026-03-14 01:05:58,672 | INFO     | executing command: cat /etc/os-release
[2026-03-14 02:07:05] 2026-03-14 01:05:58,677 | INFO     | cat /etc/os-release:
[2026-03-14 02:07:05] NAME="CentOS Linux"
[2026-03-14 02:07:05] VERSION="7 (Core)"
[2026-03-14 02:07:05] ID="centos"
[2026-03-14 02:07:05] ID_LIKE="rhel fedora"
[2026-03-14 02:07:05] VERSION_ID="7"
[2026-03-14 02:07:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 02:07:05] ANSI_COLOR="0;31"
[2026-03-14 02:07:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 02:07:05] HOME_URL="https://www.centos.org/"
[2026-03-14 02:07:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 02:07:05] 
[2026-03-14 02:07:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 02:07:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 02:07:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 02:07:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 02:07:05] 
[2026-03-14 02:07:05] 2026-03-14 01:05:58,677 | INFO     | **************************************
[2026-03-14 02:07:05] 2026-03-14 01:05:59,180 | INFO     | executing command: df -mP /tmp/job_11306262/atlas/pilot/slots/0
[2026-03-14 02:07:05] 2026-03-14 01:05:59,185 | INFO     | sufficient remaining disk space (220079325184 B)
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | INFO     | update_server=False
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | INFO     | aborting loop
[2026-03-14 02:07:05] 2026-03-14 01:05:59,186 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 02:07:05] 2026-03-14 01:05:59,187 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 02:07:05] 2026-03-14 01:05:59,187 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 02:07:05] 2026-03-14 01:06:00,191 | INFO     | [job] queue monitor thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,191 | INFO     | [job] retrieve thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,191 | INFO     | [job] job monitor thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,217 | INFO     | all data control threads have been joined
[2026-03-14 02:07:05] 2026-03-14 01:06:00,345 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,370 | INFO     | all job control threads have been joined
[2026-03-14 02:07:05] 2026-03-14 01:06:00,394 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 02:07:05] 2026-03-14 01:06:00,468 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:00,649 | INFO     | all payload control threads have been joined
[2026-03-14 02:07:05] 2026-03-14 01:06:00,812 | INFO     | [data] copytool_in thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,013 | INFO     | [payload] validate_post thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,222 | INFO     | [data] control thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,244 | INFO     | [payload] failed_post thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,375 | INFO     | [job] control thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,535 | INFO     | [job] validate thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,654 | INFO     | [payload] control thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:01,790 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 02:07:05] 2026-03-14 01:06:02,426 | INFO     | [data] copytool_out thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:05,795 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:09,942 | INFO     | job.realtimelogging is not enabled
[2026-03-14 02:07:05] 2026-03-14 01:06:10,947 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 02:07:05] 2026-03-14 01:06:58,853 | INFO     | [monitor] cgroup control has ended
[2026-03-14 02:07:05] 2026-03-14 01:07:00,040 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-03-14 02:07:05] 2026-03-14 01:07:00,479 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 02:07:05] 2026-03-14 01:07:00,480 | INFO     | [monitor] control thread has ended
[2026-03-14 02:07:05] 2026-03-14 01:07:05,065 | INFO     | all workflow threads have been joined
[2026-03-14 02:07:05] 2026-03-14 01:07:05,065 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 02:07:05] 2026-03-14 01:07:05,065 | INFO     | traces error code: 0
[2026-03-14 02:07:05] 2026-03-14 01:07:05,065 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 02:07:05] 2026-03-14 01:07:05,114 [wrapper] ==== pilot stdout END ====
[2026-03-14 02:07:05] 2026-03-14 01:07:05,116 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 02:07:05] 2026-03-14 01:07:05,117 [wrapper] pilotpid: 10701
[2026-03-14 02:07:05] 2026-03-14 01:07:05,118 [wrapper] Pilot exit status: 0
[2026-03-14 02:07:05] 2026-03-14 01:07:05,186 [wrapper] pandaids: 7042020641
[2026-03-14 02:07:05] 2026-03-14 01:07:05,211 [wrapper] cleanup supervisor_pilot 23834 10702
[2026-03-14 02:07:05] 2026-03-14 01:07:05,212 [wrapper] Test setup, not cleaning
[2026-03-14 02:07:05] 2026-03-14 01:07:05,213 [wrapper] apfmon messages muted
[2026-03-14 02:07:05] 2026-03-14 01:07:05,215 [wrapper] ==== wrapper stdout END ====
[2026-03-14 02:07:05] 2026-03-14 01:07:05,216 [wrapper] ==== wrapper stderr END ====
[2026-03-14 02:07:05]  *** Error codes and diagnostics ***
[2026-03-14 02:07:05]     "exeErrorCode": 0,
[2026-03-14 02:07:05]     "exeErrorDiag": "",
[2026-03-14 02:07:05]     "pilotErrorCode": 0,
[2026-03-14 02:07:05]     "pilotErrorDiag": "",
[2026-03-14 02:07:05]  *** Listing of results directory ***
[2026-03-14 02:07:05] total 456252
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      5111 Mar  5 18:40 queuedata.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user    584627 Mar  5 18:40 pilot3.tar.gz
[2026-03-14 02:07:05] -rwx------ 1 mf493845 unix-user     36322 Mar  5 18:40 runpilot2-wrapper.sh
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       100 Mar 13 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 02:07:05] -rwxr-xr-x 1 mf493845 unix-user      7986 Mar 13 23:16 run_atlas
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       105 Mar 13 23:16 job.xml
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user 275523537 Mar 14 00:26 EVNT.48929179._000005.pool.root.1
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 14 00:26 start_atlas.sh
[2026-03-14 02:07:05] drwxrwx--x 2 mf493845 unix-user       100 Mar 14 00:26 shared
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user    597950 Mar 14 00:26 input.tar.gz
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      6389 Mar 14 00:26 init_data.xml
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user         0 Mar 14 00:26 boinc_setup_complete
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      8192 Mar 14 00:26 boinc_mmap_file
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user         0 Mar 14 00:26 boinc_lockfile
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      2588 Mar 14 00:27 pandaJob.out
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user   1006713 Mar 14 00:29 agis_schedconf.cvmfs.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user   1511579 Mar 14 00:29 agis_ddmendpoints.agis.ALL.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       415 Mar 14 00:29 workernode_map.json
[2026-03-14 02:07:05] drwx------ 5 mf493845 unix-user       440 Mar 14 00:29 pilot3
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user 185426400 Mar 14 02:05 HITS.48929183._000108.pool.root.1
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user        95 Mar 14 02:05 pilot_heartbeat.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      1017 Mar 14 02:05 memory_monitor_summary.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user    330838 Mar 14 02:05 log.48929183._000108.job.log.tgz.1
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      6317 Mar 14 02:05 heartbeat.json
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      4634 Mar 14 02:07 pilotlog.txt
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user    843580 Mar 14 02:07 log.48929183._000108.job.log.1
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       357 Mar 14 02:07 output.list
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       620 Mar 14 02:07 runtime_log
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user   1187840 Mar 14 02:07 result.tar.gz
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user       645 Mar 14 02:07 zKPODmQrRI9n9Rq4apOajLDm4fhM0noT9bVooX4SDmKTMLDml6FkQn.diag
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user      9219 Mar 14 02:07 runtime_log.err
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user     22338 Mar 14 02:07 stderr.txt
[2026-03-14 02:07:05] HITS file was successfully produced:
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user 185426400 Mar 14 02:05 shared/HITS.pool.root.1
[2026-03-14 02:07:05]  *** Contents of shared directory: ***
[2026-03-14 02:07:05] total 451912
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user 275523537 Mar 14 00:26 ATLAS.root_0
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user     15845 Mar 14 00:26 start_atlas.sh
[2026-03-14 02:07:05] -rw-r--r-- 2 mf493845 unix-user    597950 Mar 14 00:26 input.tar.gz
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user 185426400 Mar 14 02:05 HITS.pool.root.1
[2026-03-14 02:07:05] -rw------- 1 mf493845 unix-user   1187840 Mar 14 02:07 result.tar.gz
02:07:06 (5185): run_atlas exited; CPU time 27866.343538
02:07:06 (5185): called boinc_finish(0)

</stderr_txt>
]]>

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