Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:27:18 (2095411): wrapper (7.7.26015): starting
01:27:18 (2095411): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 01:27:18] Arguments: --nthreads 4
[2026-03-15 01:27:18] Threads: 4
[2026-03-15 01:27:18] Checking for CVMFS
[2026-03-15 01:27:18] No cvmfs_config command found, will try listing directly
[2026-03-15 01:27:18] CVMFS is ok
[2026-03-15 01:27:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 01:27:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 01:27:18] Further information can be found at the LHC@home message board.
[2026-03-15 01:27:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 01:27:18] Checking for apptainer binary...
[2026-03-15 01:27:18] which: no apptainer in ((null))
[2026-03-15 01:27:18] apptainer is not installed, using version from CVMFS
[2026-03-15 01:27:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 01:27:18] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-03-15 01:27:18] apptainer works
[2026-03-15 01:27:18] Set ATHENA_PROC_NUMBER=4
[2026-03-15 01:27:18] Set ATHENA_CORE_NUMBER=4
[2026-03-15 01:27:18] Starting ATLAS job with PandaID=7044619503
[2026-03-15 01:27:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 04:45:01]  *** The last 200 lines of the pilot log: ***
[2026-03-15 04:45:01] 2026-03-15 03:43:55,975 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,323 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,323 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7044619503/jobReport.json
[2026-03-15 04:45:01] 2026-03-15 03:43:56,326 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/0/workernode_map.json
[2026-03-15 04:45:01] 2026-03-15 03:43:56,327 | INFO     | this job has now completed (state=finished)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,327 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,327 | INFO     | log transfer has been attempted: DONE
[2026-03-15 04:45:01] 2026-03-15 03:43:56,327 | INFO     | job 7044619503 has finished - writing final server update
[2026-03-15 04:45:01] 2026-03-15 03:43:56,328 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_571112/.job.ad'
[2026-03-15 04:45:01] 2026-03-15 03:43:56,328 | INFO     | total number of processed events: 400 (read)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,340 | INFO     | using path: /var/lib/boinc/var/slot52/slots/0/PanDA_Pilot-7044619503/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,340 | INFO     | extracted standard info from prmon json
[2026-03-15 04:45:01] 2026-03-15 03:43:56,340 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 04:45:01] 2026-03-15 03:43:56,340 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 04:45:01] 2026-03-15 03:43:56,341 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 04:45:01] 2026-03-15 03:43:56,341 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 04:45:01] 2026-03-15 03:43:56,344 | INFO     | fitting pss+swap vs Time
[2026-03-15 04:45:01] 2026-03-15 03:43:56,345 | INFO     | sum of square deviations: 2229146912.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,346 | INFO     | sum of deviations: -1337054852.0000005
[2026-03-15 04:45:01] 2026-03-15 03:43:56,346 | INFO     | mean x: 1773540334.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,346 | INFO     | mean y: 2336340.10880829
[2026-03-15 04:45:01] 2026-03-15 03:43:56,346 | INFO     | intersect: 1066115804.8121206
[2026-03-15 04:45:01] 2026-03-15 03:43:56,347 | INFO     | chi2: 1.2280888644434
[2026-03-15 04:45:01] 2026-03-15 03:43:56,347 | INFO     | sum of square deviations: 2060343747.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,348 | INFO     | sum of deviations: -1166924144.000004
[2026-03-15 04:45:01] 2026-03-15 03:43:56,348 | INFO     | mean x: 1773540181.5
[2026-03-15 04:45:01] 2026-03-15 03:43:56,348 | INFO     | mean y: 2336493.829787234
[2026-03-15 04:45:01] 2026-03-15 03:43:56,348 | INFO     | intersect: 1006822692.3876531
[2026-03-15 04:45:01] 2026-03-15 03:43:56,349 | INFO     | chi2: 1.228213887634294
[2026-03-15 04:45:01] 2026-03-15 03:43:56,349 | INFO     | current chi2=1.228213887634294 (change=-0.010180304904131533 %)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,349 | INFO     | right removable region: 187
[2026-03-15 04:45:01] 2026-03-15 03:43:56,349 | INFO     | sum of square deviations: 2060343747.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,350 | INFO     | sum of deviations: -21484048445.5
[2026-03-15 04:45:01] 2026-03-15 03:43:56,350 | INFO     | mean x: 1773540486.5
[2026-03-15 04:45:01] 2026-03-15 03:43:56,350 | INFO     | mean y: 2354245.526595745
[2026-03-15 04:45:01] 2026-03-15 03:43:56,350 | INFO     | intersect: 18495787580.377605
[2026-03-15 04:45:01] 2026-03-15 03:43:56,351 | INFO     | chi2: 0.04609938478932147
[2026-03-15 04:45:01] 2026-03-15 03:43:56,351 | INFO     | current chi2=0.04609938478932147 (change=96.24625007814767 %)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,351 | INFO     | sum of square deviations: 1900284932.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,352 | INFO     | sum of deviations: -17935101476.999992
[2026-03-15 04:45:01] 2026-03-15 03:43:56,352 | INFO     | mean x: 1773540639.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,352 | INFO     | mean y: 2350863.218579235
[2026-03-15 04:45:01] 2026-03-15 03:43:56,353 | INFO     | intersect: 16741225543.749071
[2026-03-15 04:45:01] 2026-03-15 03:43:56,353 | INFO     | chi2: 0.04186549156925957
[2026-03-15 04:45:01] 2026-03-15 03:43:56,353 | INFO     | current chi2=0.04186549156925957 (change=9.184272717328424 %)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,353 | INFO     | left removable region: 20
[2026-03-15 04:45:01] 2026-03-15 03:43:56,353 | INFO     | sum of square deviations: 1444149868.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,354 | INFO     | sum of deviations: -12294452339.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,354 | INFO     | mean x: 1773540761.0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,354 | INFO     | mean y: 2346039.634730539
[2026-03-15 04:45:01] 2026-03-15 03:43:56,354 | INFO     | intersect: 15100995314.578466
[2026-03-15 04:45:01] 2026-03-15 03:43:56,355 | INFO     | chi2: 0.037010297192341196
[2026-03-15 04:45:01] 2026-03-15 03:43:56,355 | INFO     | current memory leak: -8.51 B/s (using 167 data points, chi2=0.04)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,355 | INFO     | could have reported an average CPU frequency of 2568 MHz (10 samples)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | ..............................
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . Timing measurements:
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . get job = 0 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . initial setup = 6 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . payload setup = 6 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . stage-in = 0 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . payload execution = 11754 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . stage-out = 1 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | . log creation = 0 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,356 | INFO     | ..............................
[2026-03-15 04:45:01] 2026-03-15 03:43:56,545 | INFO     | 
[2026-03-15 04:45:01] 2026-03-15 03:43:56,545 | INFO     | job summary report
[2026-03-15 04:45:01] 2026-03-15 03:43:56,545 | INFO     | --------------------------------------------------
[2026-03-15 04:45:01] 2026-03-15 03:43:56,545 | INFO     | PanDA job id: 7044619503
[2026-03-15 04:45:01] 2026-03-15 03:43:56,545 | INFO     | task id: 48955015
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | errors: (none)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | pilot state: finished 
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | transexitcode: 0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | exeerrorcode: 0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | exeerrordiag: 
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | exitcode: 0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | exitmsg: OK
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | cpuconsumptiontime: 42700 s
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | nevents: 400
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | neventsw: 0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | pid: 2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | pgrp: 2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:56,546 | INFO     | corecount: 4
[2026-03-15 04:45:01] 2026-03-15 03:43:56,547 | INFO     | event service: False
[2026-03-15 04:45:01] 2026-03-15 03:43:56,547 | INFO     | sizes: {0: 2280041, 1: 2280247, 11: 2280275, 11764: 2310205, 11765: 2319225, 11766: 2319281, 11769: 2319603}
[2026-03-15 04:45:01] 2026-03-15 03:43:56,547 | INFO     | --------------------------------------------------
[2026-03-15 04:45:01] 2026-03-15 03:43:56,547 | INFO     | 
[2026-03-15 04:45:01] 2026-03-15 03:43:56,547 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/0
[2026-03-15 04:45:01] 2026-03-15 03:43:56,572 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,572 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,572 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,573 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | job 7044619503 has completed (purged errors)
[2026-03-15 04:45:01] 2026-03-15 03:43:56,574 | INFO     | overall cleanup function is called
[2026-03-15 04:45:01] 2026-03-15 03:43:57,582 | INFO     | --- collectZombieJob: --- 10, [2104357]
[2026-03-15 04:45:01] 2026-03-15 03:43:57,582 | INFO     | zombie collector waiting for pid 2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:57,582 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 04:45:01] 2026-03-15 03:43:57,582 | INFO     | collected zombie processes
[2026-03-15 04:45:01] 2026-03-15 03:43:57,582 | INFO     | will attempt to kill all subprocesses of pid=2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:58,074 | INFO     | process IDs to be killed: [2104357] (in reverse order)
[2026-03-15 04:45:01] 2026-03-15 03:43:58,243 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 04:45:01] 2026-03-15 03:43:58,243 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 04:45:01] 2026-03-15 03:43:58,256 | INFO     | did not find any defunct processes belonging to 2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:58,272 | INFO     | did not find any defunct processes belonging to 2104357
[2026-03-15 04:45:01] 2026-03-15 03:43:58,272 | INFO     | ready for new job
[2026-03-15 04:45:01] 2026-03-15 03:43:58,272 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 04:45:01] 2026-03-15 03:43:58,274 | INFO     | **************************************
[2026-03-15 04:45:01] 2026-03-15 03:43:58,275 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 04:45:01] 2026-03-15 03:43:58,275 | INFO     | **************************************
[2026-03-15 04:45:01] 2026-03-15 03:43:58,275 | INFO     | 
[2026-03-15 04:45:01] 2026-03-15 03:43:58,278 | INFO     | architecture information:
[2026-03-15 04:45:01] 2026-03-15 03:43:58,283 | INFO     | executing command: cat /etc/os-release
[2026-03-15 04:45:01] 2026-03-15 03:43:58,310 | INFO     | cat /etc/os-release:
[2026-03-15 04:45:01] NAME="CentOS Linux"
[2026-03-15 04:45:01] VERSION="7 (Core)"
[2026-03-15 04:45:01] ID="centos"
[2026-03-15 04:45:01] ID_LIKE="rhel fedora"
[2026-03-15 04:45:01] VERSION_ID="7"
[2026-03-15 04:45:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 04:45:01] ANSI_COLOR="0;31"
[2026-03-15 04:45:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 04:45:01] HOME_URL="https://www.centos.org/"
[2026-03-15 04:45:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 04:45:01] 
[2026-03-15 04:45:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 04:45:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 04:45:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 04:45:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 04:45:01] 
[2026-03-15 04:45:01] 2026-03-15 03:43:58,311 | INFO     | **************************************
[2026-03-15 04:45:01] 2026-03-15 03:43:58,813 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/0
[2026-03-15 04:45:01] 2026-03-15 03:43:58,833 | INFO     | sufficient remaining disk space (21356347392 B)
[2026-03-15 04:45:01] 2026-03-15 03:43:58,833 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 04:45:01] 2026-03-15 03:43:58,833 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 04:45:01] 2026-03-15 03:43:58,833 | INFO     | update_server=False
[2026-03-15 04:45:01] 2026-03-15 03:43:58,833 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 04:45:01] 2026-03-15 03:43:59,419 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 04:45:01] 2026-03-15 03:43:59,421 | INFO     | all data control threads have been joined
[2026-03-15 04:45:01] 2026-03-15 03:43:59,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 04:45:01] 2026-03-15 03:43:59,483 | INFO     | aborting loop
[2026-03-15 04:45:01] 2026-03-15 03:43:59,492 | INFO     | all payload control threads have been joined
[2026-03-15 04:45:01] 2026-03-15 03:43:59,508 | INFO     | all job control threads have been joined
[2026-03-15 04:45:01] 2026-03-15 03:43:59,838 | INFO     | [job] retrieve thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:43:59,858 | INFO     | [payload] failed_post thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:43:59,879 | INFO     | [payload] validate_post thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,039 | INFO     | [data] copytool_in thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,122 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 04:45:01] 2026-03-15 03:44:00,426 | INFO     | [data] control thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,472 | INFO     | [job] validate thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,488 | INFO     | [job] job monitor thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,497 | INFO     | [payload] control thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,513 | INFO     | [job] control thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,587 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,741 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:00,853 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:01,468 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 04:45:01] 2026-03-15 03:44:02,127 | INFO     | [data] copytool_out thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:02,473 | INFO     | [job] queue monitor thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:03,425 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:09,502 | INFO     | job.realtimelogging is not enabled
[2026-03-15 04:45:01] 2026-03-15 03:44:10,507 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 04:45:01] 2026-03-15 03:44:28,157 | INFO     | PID=2099565 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 04:45:01] 2026-03-15 03:44:28,158 | INFO     | .. there are 13 such processes running
[2026-03-15 04:45:01] 2026-03-15 03:44:28,158 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 04:45:01] 2026-03-15 03:44:28,158 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 04:45:01] 2026-03-15 03:44:28,158 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 04:45:01] 2026-03-15 03:44:54,919 | INFO     | [monitor] cgroup control has ended
[2026-03-15 04:45:01] 2026-03-15 03:44:55,117 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22843380463424)>', '<ExcThread(monitor, started 22843139299072)>']
[2026-03-15 04:45:01] 2026-03-15 03:44:55,299 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 04:45:01] 2026-03-15 03:44:55,299 | INFO     | [monitor] control thread has ended
[2026-03-15 04:45:01] 2026-03-15 03:45:00,142 | INFO     | all workflow threads have been joined
[2026-03-15 04:45:01] 2026-03-15 03:45:00,142 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 04:45:01] 2026-03-15 03:45:00,143 | INFO     | traces error code: 0
[2026-03-15 04:45:01] 2026-03-15 03:45:00,143 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 04:45:01] 2026-03-15 03:45:00,355 [wrapper] ==== pilot stdout END ====
[2026-03-15 04:45:01] 2026-03-15 03:45:00,358 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 04:45:01] 2026-03-15 03:45:00,367 [wrapper] pilotpid: 2099565
[2026-03-15 04:45:01] 2026-03-15 03:45:00,375 [wrapper] Pilot exit status: 0
[2026-03-15 04:45:01] 2026-03-15 03:45:00,493 [wrapper] pandaids: 7044619503
[2026-03-15 04:45:01] 2026-03-15 03:45:00,621 [wrapper] cleanup supervisor_pilot 2364707 2099566
[2026-03-15 04:45:01] 2026-03-15 03:45:00,628 [wrapper] Test setup, not cleaning
[2026-03-15 04:45:01] 2026-03-15 03:45:00,631 [wrapper] apfmon messages muted
[2026-03-15 04:45:01] 2026-03-15 03:45:00,650 [wrapper] ==== wrapper stdout END ====
[2026-03-15 04:45:01] 2026-03-15 03:45:00,653 [wrapper] ==== wrapper stderr END ====
[2026-03-15 04:45:01]  *** Error codes and diagnostics ***
[2026-03-15 04:45:01]     "exeErrorCode": 0,
[2026-03-15 04:45:01]     "exeErrorDiag": "",
[2026-03-15 04:45:01]     "pilotErrorCode": 0,
[2026-03-15 04:45:01]     "pilotErrorDiag": "",
[2026-03-15 04:45:01]  *** Listing of results directory ***
[2026-03-15 04:45:01] total 615056
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc      5111 Mar 13 18:07 queuedata.json
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc    585013 Mar 13 18:07 pilot3.tar.gz
[2026-03-15 04:45:01] -rwx------. 1 boinc boinc     36322 Mar 13 18:07 runpilot2-wrapper.sh
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc       100 Mar 15 01:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 04:45:01] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 01:27 run_atlas
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc       105 Mar 15 01:27 job.xml
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc      6563 Mar 15 01:27 init_data.xml
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc 436652120 Mar 15 01:27 EVNT.46701403._002421.pool.root.1
[2026-03-15 04:45:01] drwxrwx--x. 2 boinc boinc      4096 Mar 15 01:27 shared
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc    597533 Mar 15 01:27 input.tar.gz
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc     15845 Mar 15 01:27 start_atlas.sh
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc         0 Mar 15 01:27 boinc_lockfile
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc      2571 Mar 15 01:27 pandaJob.out
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc   1006481 Mar 15 01:27 agis_schedconf.cvmfs.json
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc       447 Mar 15 01:27 workernode_map.json
[2026-03-15 04:45:01] drwx------. 5 boinc boinc      4096 Mar 15 01:27 pilot3
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc 185143809 Mar 15 04:43 HITS.48955015._018278.pool.root.1
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc       530 Mar 15 04:43 boinc_task_state.xml
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc      1033 Mar 15 04:43 memory_monitor_summary.json
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc   1511579 Mar 15 04:43 agis_ddmendpoints.agis.ALL.json
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc    382400 Mar 15 04:43 log.48955015._018278.job.log.tgz.1
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc      6405 Mar 15 04:43 heartbeat.json
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc        95 Mar 15 04:44 pilot_heartbeat.json
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc      4901 Mar 15 04:45 pilotlog.txt
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc   1658093 Mar 15 04:45 log.48955015._018278.job.log.1
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc      8192 Mar 15 04:45 boinc_mmap_file
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc        27 Mar 15 04:45 wrapper_checkpoint.txt
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc       357 Mar 15 04:45 output.list
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc       620 Mar 15 04:45 runtime_log
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc   2058240 Mar 15 04:45 result.tar.gz
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc      9205 Mar 15 04:45 runtime_log.err
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc       665 Mar 15 04:45 nVnMDmaALL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmubnLDmYH7zhm.diag
[2026-03-15 04:45:01] -rw-r--r--. 1 boinc boinc     21142 Mar 15 04:45 stderr.txt
[2026-03-15 04:45:01] HITS file was successfully produced:
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc 185143809 Mar 15 04:43 shared/HITS.pool.root.1
[2026-03-15 04:45:01]  *** Contents of shared directory: ***
[2026-03-15 04:45:01] total 609848
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc 436652120 Mar 15 01:27 ATLAS.root_0
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc    597533 Mar 15 01:27 input.tar.gz
[2026-03-15 04:45:01] -rw-r--r--. 2 boinc boinc     15845 Mar 15 01:27 start_atlas.sh
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc 185143809 Mar 15 04:43 HITS.pool.root.1
[2026-03-15 04:45:01] -rw-------. 1 boinc boinc   2058240 Mar 15 04:45 result.tar.gz
04:45:02 (2095411): run_atlas exited; CPU time 43190.757158
04:45:02 (2095411): called boinc_finish(0)

</stderr_txt>
]]>

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