Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:59:54 (3060): wrapper (7.7.26015): starting
04:59:54 (3060): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 04:59:54] Arguments: --nthreads 8
[2026-03-14 04:59:54] Threads: 8
[2026-03-14 04:59:54] Checking for CVMFS
[2026-03-14 04:59:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 04:59:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 04:59:56] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 04:59:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 04:59:58] 2.11.2.0 32220 127067 133660 157263 0 56 19656444 25165825 899 130560 150 35618799 99.856 19873531 752 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 04:59:58] CVMFS is ok
[2026-03-14 04:59:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 04:59:58] Checking for apptainer binary...
[2026-03-14 04:59:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 04:59:58] Running /usr/bin/apptainer --version
[2026-03-14 04:59:58] apptainer version 1.3.2-1.el7
[2026-03-14 04:59:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 05:00:03] cg-vwn447.simple-grid.lan
[2026-03-14 05:00:03] apptainer works
[2026-03-14 05:00:03] Set ATHENA_PROC_NUMBER=8
[2026-03-14 05:00:03] Set ATHENA_CORE_NUMBER=8
[2026-03-14 05:00:03] Starting ATLAS job with PandaID=7044578211
[2026-03-14 05:00:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 08:31:45]  *** The last 200 lines of the pilot log: ***
[2026-03-14 08:31:46] 2026-03-14 07:30:51,610 | INFO     | total number of processed events: 400 (read)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,612 | INFO     | using path: /var/lib/boinc/slots/8/PanDA_Pilot-7044578211/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,612 | INFO     | extracted standard info from prmon json
[2026-03-14 08:31:46] 2026-03-14 07:30:51,613 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 08:31:46] 2026-03-14 07:30:51,613 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 08:31:46] 2026-03-14 07:30:51,613 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 08:31:46] 2026-03-14 07:30:51,613 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 08:31:46] 2026-03-14 07:30:51,617 | INFO     | fitting pss+swap vs Time
[2026-03-14 08:31:46] 2026-03-14 07:30:51,618 | INFO     | sum of square deviations: 2480604650.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,620 | INFO     | sum of deviations: 16020154646.000004
[2026-03-14 08:31:46] 2026-03-14 07:30:51,620 | INFO     | mean x: 1773467334.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,620 | INFO     | mean y: 2464655.67
[2026-03-14 08:31:46] 2026-03-14 07:30:51,620 | INFO     | intersect: -11450880381.927755
[2026-03-14 08:31:46] 2026-03-14 07:30:51,620 | INFO     | chi2: 2.2317084361606376
[2026-03-14 08:31:46] 2026-03-14 07:30:51,621 | INFO     | sum of square deviations: 2299168690.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,622 | INFO     | sum of deviations: 28631600682.999996
[2026-03-14 08:31:46] 2026-03-14 07:30:51,622 | INFO     | mean x: 1773467182.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,623 | INFO     | mean y: 2475031.194871795
[2026-03-14 08:31:46] 2026-03-14 07:30:51,623 | INFO     | intersect: -22082552657.412563
[2026-03-14 08:31:46] 2026-03-14 07:30:51,623 | INFO     | chi2: 1.4599319260831183
[2026-03-14 08:31:46] 2026-03-14 07:30:51,623 | INFO     | current chi2=1.4599319260831183 (change=34.582318082968754 %)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,624 | INFO     | sum of square deviations: 2126802667.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,625 | INFO     | sum of deviations: 27824519412.499996
[2026-03-14 08:31:46] 2026-03-14 07:30:51,625 | INFO     | mean x: 1773467029.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,625 | INFO     | mean y: 2474316.984210526
[2026-03-14 08:31:46] 2026-03-14 07:30:51,626 | INFO     | intersect: -23199428023.93969
[2026-03-14 08:31:46] 2026-03-14 07:30:51,626 | INFO     | chi2: 1.4608520227989572
[2026-03-14 08:31:46] 2026-03-14 07:30:51,626 | INFO     | current chi2=1.4608520227989572 (change=-0.06302326152339661 %)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,626 | INFO     | right removable region: 189
[2026-03-14 08:31:46] 2026-03-14 07:30:51,627 | INFO     | sum of square deviations: 2299168690.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,628 | INFO     | sum of deviations: -13044625093.000002
[2026-03-14 08:31:46] 2026-03-14 07:30:51,628 | INFO     | mean x: 1773467487.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,628 | INFO     | mean y: 2488786.4974358976
[2026-03-14 08:31:46] 2026-03-14 07:30:51,629 | INFO     | intersect: 10064481446.348705
[2026-03-14 08:31:46] 2026-03-14 07:30:51,629 | INFO     | chi2: 0.8265064753767726
[2026-03-14 08:31:46] 2026-03-14 07:30:51,629 | INFO     | current chi2=0.8265064753767726 (change=62.96530218801033 %)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,630 | INFO     | sum of square deviations: 2126802667.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,631 | INFO     | sum of deviations: -7853055789.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,631 | INFO     | mean x: 1773467639.5
[2026-03-14 08:31:46] 2026-03-14 07:30:51,631 | INFO     | mean y: 2484217.205263158
[2026-03-14 08:31:46] 2026-03-14 07:30:51,632 | INFO     | intersect: 6550877505.726646
[2026-03-14 08:31:46] 2026-03-14 07:30:51,632 | INFO     | chi2: 0.7951255318121362
[2026-03-14 08:31:46] 2026-03-14 07:30:51,632 | INFO     | current chi2=0.7951255318121362 (change=3.7968176293272258 %)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,632 | INFO     | left removable region: 20
[2026-03-14 08:31:46] 2026-03-14 07:30:51,633 | INFO     | sum of square deviations: 1496660620.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,634 | INFO     | sum of deviations: 2838619872.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,634 | INFO     | mean x: 1773467609.0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,634 | INFO     | mean y: 2497239.325443787
[2026-03-14 08:31:46] 2026-03-14 07:30:51,634 | INFO     | intersect: -3361124633.2509365
[2026-03-14 08:31:46] 2026-03-14 07:30:51,635 | INFO     | chi2: 0.00036710314032870176
[2026-03-14 08:31:46] 2026-03-14 07:30:51,635 | INFO     | current memory leak: 1.90 B/s (using 169 data points, chi2=0.00)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,635 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | ..............................
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . Timing measurements:
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . get job = 0 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . initial setup = 116 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . payload setup = 68 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . stage-in = 0 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . payload execution = 12187 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . stage-out = 4 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,636 | INFO     | . log creation = 1 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,637 | INFO     | ..............................
[2026-03-14 08:31:46] 2026-03-14 07:30:51,709 | INFO     | time since job start (12278s) is within the limit (345600.0s)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,786 | INFO     | 
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | job summary report
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | --------------------------------------------------
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | PanDA job id: 7044578211
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | task id: 48955010
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | errors: (none)
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | pilot state: finished 
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | transexitcode: 0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,787 | INFO     | exeerrorcode: 0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | exeerrordiag: 
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | exitcode: 0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | exitmsg: OK
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | cpuconsumptiontime: 52802 s
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | nevents: 400
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | neventsw: 0
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | pid: 11538
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | pgrp: 11538
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | corecount: 8
[2026-03-14 08:31:46] 2026-03-14 07:30:51,788 | INFO     | event service: False
[2026-03-14 08:31:46] 2026-03-14 07:30:51,789 | INFO     | sizes: {0: 2279089, 1: 2279774, 2: 2280235, 12: 2280235, 12259: 2309996, 12264: 2318994, 12266: 2319178, 12267: 2319372}
[2026-03-14 08:31:46] 2026-03-14 07:30:51,789 | INFO     | --------------------------------------------------
[2026-03-14 08:31:46] 2026-03-14 07:30:51,789 | INFO     | 
[2026-03-14 08:31:46] 2026-03-14 07:30:51,789 | INFO     | executing command: ls -lF /var/lib/boinc/slots/8
[2026-03-14 08:31:46] 2026-03-14 07:30:52,515 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,515 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,515 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,515 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 08:31:46] 2026-03-14 07:30:52,517 | INFO     | job 7044578211 has completed (purged errors)
[2026-03-14 08:31:46] 2026-03-14 07:30:52,518 | INFO     | overall cleanup function is called
[2026-03-14 08:31:46] 2026-03-14 07:30:53,526 | INFO     | --- collectZombieJob: --- 10, [11538]
[2026-03-14 08:31:46] 2026-03-14 07:30:53,527 | INFO     | zombie collector waiting for pid 11538
[2026-03-14 08:31:46] 2026-03-14 07:30:53,527 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 08:31:46] 2026-03-14 07:30:53,527 | INFO     | collected zombie processes
[2026-03-14 08:31:46] 2026-03-14 07:30:53,527 | INFO     | will attempt to kill all subprocesses of pid=11538
[2026-03-14 08:31:46] 2026-03-14 07:30:53,606 | INFO     | process IDs to be killed: [11538] (in reverse order)
[2026-03-14 08:31:46] 2026-03-14 07:30:54,674 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 08:31:46] 2026-03-14 07:30:54,674 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 08:31:46] 2026-03-14 07:30:54,677 | INFO     | did not find any defunct processes belonging to 11538
[2026-03-14 08:31:46] 2026-03-14 07:30:54,678 | INFO     | did not find any defunct processes belonging to 11538
[2026-03-14 08:31:46] 2026-03-14 07:30:54,678 | INFO     | ready for new job
[2026-03-14 08:31:46] 2026-03-14 07:30:54,679 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 08:31:46] 2026-03-14 07:30:54,680 | INFO     | **************************************
[2026-03-14 08:31:46] 2026-03-14 07:30:54,681 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 08:31:46] 2026-03-14 07:30:54,681 | INFO     | **************************************
[2026-03-14 08:31:46] 2026-03-14 07:30:54,681 | INFO     | 
[2026-03-14 08:31:46] 2026-03-14 07:30:54,681 | INFO     | pilot is running in a VM
[2026-03-14 08:31:46] 2026-03-14 07:30:54,681 | INFO     | architecture information:
[2026-03-14 08:31:46] 2026-03-14 07:30:54,690 | INFO     | executing command: cat /etc/os-release
[2026-03-14 08:31:46] 2026-03-14 07:30:54,944 | INFO     | cat /etc/os-release:
[2026-03-14 08:31:46] NAME="CentOS Linux"
[2026-03-14 08:31:46] VERSION="7 (Core)"
[2026-03-14 08:31:46] ID="centos"
[2026-03-14 08:31:46] ID_LIKE="rhel fedora"
[2026-03-14 08:31:46] VERSION_ID="7"
[2026-03-14 08:31:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 08:31:46] ANSI_COLOR="0;31"
[2026-03-14 08:31:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 08:31:46] HOME_URL="https://www.centos.org/"
[2026-03-14 08:31:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 08:31:46] 
[2026-03-14 08:31:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 08:31:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 08:31:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 08:31:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 08:31:46] 
[2026-03-14 08:31:46] 2026-03-14 07:30:54,944 | INFO     | **************************************
[2026-03-14 08:31:46] 2026-03-14 07:30:55,447 | INFO     | executing command: df -mP /var/lib/boinc/slots/8
[2026-03-14 08:31:46] 2026-03-14 07:30:55,627 | INFO     | sufficient remaining disk space (496044605440 B)
[2026-03-14 08:31:46] 2026-03-14 07:30:55,627 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | INFO     | update_server=False
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 08:31:46] 2026-03-14 07:30:55,628 | INFO     | aborting loop
[2026-03-14 08:31:46] 2026-03-14 07:30:55,806 | INFO     | all data control threads have been joined
[2026-03-14 08:31:46] 2026-03-14 07:30:56,634 | INFO     | [job] retrieve thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,634 | INFO     | [job] job monitor thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,673 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,712 | INFO     | all job control threads have been joined
[2026-03-14 08:31:46] 2026-03-14 07:30:56,750 | INFO     | [payload] failed_post thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,800 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 08:31:46] 2026-03-14 07:30:56,813 | INFO     | [data] control thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,918 | INFO     | [job] validate thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:56,994 | INFO     | [payload] validate_post thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,025 | INFO     | all payload control threads have been joined
[2026-03-14 08:31:46] 2026-03-14 07:30:57,248 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 08:31:46] 2026-03-14 07:30:57,369 | INFO     | [data] copytool_in thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,561 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,629 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,635 | INFO     | [data] copytool_out thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,718 | INFO     | [job] control thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:57,806 | INFO     | [job] queue monitor thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:30:58,031 | INFO     | [payload] control thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:31:01,257 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:31:06,603 | INFO     | job.realtimelogging is not enabled
[2026-03-14 08:31:46] 2026-03-14 07:31:07,609 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 08:31:46] 2026-03-14 07:31:24,844 | INFO     | PID=7076 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-14 08:31:46] 2026-03-14 07:31:24,844 | INFO     | .. there are 2 such processes running
[2026-03-14 08:31:46] 2026-03-14 07:31:24,845 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 08:31:46] 2026-03-14 07:31:24,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 08:31:46] 2026-03-14 07:31:24,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 08:31:46] 2026-03-14 07:31:33,540 | INFO     | [monitor] cgroup control has ended
[2026-03-14 08:31:46] 2026-03-14 07:31:35,350 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139993817339712)>', '<ExcThread(monitor, started 139993251051264)>']
[2026-03-14 08:31:46] 2026-03-14 07:31:35,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 08:31:46] 2026-03-14 07:31:35,911 | INFO     | [monitor] control thread has ended
[2026-03-14 08:31:46] 2026-03-14 07:31:40,376 | INFO     | all workflow threads have been joined
[2026-03-14 08:31:46] 2026-03-14 07:31:40,377 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 08:31:46] 2026-03-14 07:31:40,377 | INFO     | traces error code: 0
[2026-03-14 08:31:46] 2026-03-14 07:31:40,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 08:31:46] 2026-03-14 07:31:40,749 [wrapper] ==== pilot stdout END ====
[2026-03-14 08:31:46] 2026-03-14 07:31:40,858 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 08:31:46] 2026-03-14 07:31:40,967 [wrapper] pilotpid: 7076
[2026-03-14 08:31:46] 2026-03-14 07:31:41,082 [wrapper] Pilot exit status: 0
[2026-03-14 08:31:46] 2026-03-14 07:31:41,487 [wrapper] pandaids: 7044578211
[2026-03-14 08:31:46] 2026-03-14 07:31:42,564 [wrapper] cleanup supervisor_pilot 28681 7077
[2026-03-14 08:31:46] 2026-03-14 07:31:42,628 [wrapper] Test setup, not cleaning
[2026-03-14 08:31:46] 2026-03-14 07:31:42,759 [wrapper] apfmon messages muted
[2026-03-14 08:31:46] 2026-03-14 07:31:42,882 [wrapper] ==== wrapper stdout END ====
[2026-03-14 08:31:46] 2026-03-14 07:31:42,968 [wrapper] ==== wrapper stderr END ====
[2026-03-14 08:31:46]  *** Error codes and diagnostics ***
[2026-03-14 08:31:46]     "exeErrorCode": 0,
[2026-03-14 08:31:46]     "exeErrorDiag": "",
[2026-03-14 08:31:46]     "pilotErrorCode": 0,
[2026-03-14 08:31:46]     "pilotErrorDiag": "",
[2026-03-14 08:31:46]  *** Listing of results directory ***
[2026-03-14 08:31:46] total 618096
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc      5111 Mar 13 16:07 queuedata.json
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc    585013 Mar 13 16:07 pilot3.tar.gz
[2026-03-14 08:31:46] -rwx------. 1 boinc boinc     36322 Mar 13 16:07 runpilot2-wrapper.sh
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc       100 Mar 14 04:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 08:31:46] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 04:59 run_atlas
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc       105 Mar 14 04:59 job.xml
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc 436997275 Mar 14 04:59 EVNT.46701403._001628.pool.root.1
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc      6389 Mar 14 04:59 init_data.xml
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc     15845 Mar 14 04:59 start_atlas.sh
[2026-03-14 08:31:46] drwxrwx--x. 2 boinc boinc        68 Mar 14 04:59 shared
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc    597531 Mar 14 04:59 input.tar.gz
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc         0 Mar 14 04:59 boinc_lockfile
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc      2563 Mar 14 05:00 pandaJob.out
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc       415 Mar 14 05:06 workernode_map.json
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc   1004579 Mar 14 05:06 agis_schedconf.cvmfs.json
[2026-03-14 08:31:46] drwx------. 5 boinc boinc      4096 Mar 14 05:06 pilot3
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc 187646519 Mar 14 08:29 HITS.48955010._031680.pool.root.1
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc       532 Mar 14 08:29 boinc_task_state.xml
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc      1021 Mar 14 08:30 memory_monitor_summary.json
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc   1511579 Mar 14 08:30 agis_ddmendpoints.agis.ALL.json
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc    444809 Mar 14 08:30 log.48955010._031680.job.log.tgz.1
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc      6322 Mar 14 08:30 heartbeat.json
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc        95 Mar 14 08:31 pilot_heartbeat.json
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc      4951 Mar 14 08:31 pilotlog.txt
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc   1734513 Mar 14 08:31 log.48955010._031680.job.log.1
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc        28 Mar 14 08:31 wrapper_checkpoint.txt
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc      8192 Mar 14 08:31 boinc_mmap_file
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc       357 Mar 14 08:31 output.list
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc       620 Mar 14 08:31 runtime_log
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc   2201600 Mar 14 08:31 result.tar.gz
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc      8816 Mar 14 08:31 runtime_log.err
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc       655 Mar 14 08:31 98rKDmwHJL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm6rpLDmJhTa1m.diag
[2026-03-14 08:31:46] -rw-r--r--. 1 boinc boinc     20647 Mar 14 08:31 stderr.txt
[2026-03-14 08:31:46] HITS file was successfully produced:
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc 187646519 Mar 14 08:29 shared/HITS.pool.root.1
[2026-03-14 08:31:46]  *** Contents of shared directory: ***
[2026-03-14 08:31:46] total 612760
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc 436997275 Mar 14 04:59 ATLAS.root_0
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc     15845 Mar 14 04:59 start_atlas.sh
[2026-03-14 08:31:46] -rw-r--r--. 2 boinc boinc    597531 Mar 14 04:59 input.tar.gz
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc 187646519 Mar 14 08:29 HITS.pool.root.1
[2026-03-14 08:31:46] -rw-------. 1 boinc boinc   2201600 Mar 14 08:31 result.tar.gz
08:31:47 (3060): run_atlas exited; CPU time 52921.995745
08:31:47 (3060): called boinc_finish(0)

</stderr_txt>
]]>

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