Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:38:39 (2373618): wrapper (7.7.26015): starting
10:38:39 (2373618): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 10:38:39] Arguments: --nthreads 4
[2026-03-14 10:38:39] Threads: 4
[2026-03-14 10:38:39] Checking for CVMFS
[2026-03-14 10:38:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 10:38:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 10:38:40] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 10:38:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 10:38:40] 2.9.2.0 7007 14381 103464 157272 0 50 30783366 36864001 0 130560 0 6556385 99.985 534850 11439 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 10:38:40] CVMFS is ok
[2026-03-14 10:38:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 10:38:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 10:38:40] Further information can be found at the LHC@home message board.
[2026-03-14 10:38:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 10:38:40] Checking for apptainer binary...
[2026-03-14 10:38:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 10:38:40] Running /usr/bin/apptainer --version
[2026-03-14 10:38:40] apptainer version 1.4.1-1.1
[2026-03-14 10:38:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 10:38:40] thA332a
[2026-03-14 10:38:40] apptainer works
[2026-03-14 10:38:40] Set ATHENA_PROC_NUMBER=4
[2026-03-14 10:38:40] Set ATHENA_CORE_NUMBER=4
[2026-03-14 10:38:40] Starting ATLAS job with PandaID=7044815942
[2026-03-14 10:38:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 11:47:02]  *** The last 200 lines of the pilot log: ***
[2026-03-14 11:47:02] 2026-03-14 10:46:27,971 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,971 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,971 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | job 7044815942 has completed (purged errors)
[2026-03-14 11:47:02] 2026-03-14 10:46:27,972 | INFO     | overall cleanup function is called
[2026-03-14 11:47:02] 2026-03-14 10:46:28,979 | INFO     | --- collectZombieJob: --- 10, [2382225]
[2026-03-14 11:47:02] 2026-03-14 10:46:28,979 | INFO     | zombie collector waiting for pid 2382225
[2026-03-14 11:47:02] 2026-03-14 10:46:28,979 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 11:47:02] 2026-03-14 10:46:28,979 | INFO     | collected zombie processes
[2026-03-14 11:47:02] 2026-03-14 10:46:28,979 | INFO     | will attempt to kill all subprocesses of pid=2382225
[2026-03-14 11:47:02] 2026-03-14 10:46:29,022 | INFO     | process IDs to be killed: [2382225] (in reverse order)
[2026-03-14 11:47:02] 2026-03-14 10:46:29,055 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 11:47:02] 2026-03-14 10:46:29,055 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 11:47:02] 2026-03-14 10:46:29,057 | INFO     | did not find any defunct processes belonging to 2382225
[2026-03-14 11:47:02] 2026-03-14 10:46:29,058 | INFO     | did not find any defunct processes belonging to 2382225
[2026-03-14 11:47:02] 2026-03-14 10:46:29,058 | INFO     | ready for new job
[2026-03-14 11:47:02] 2026-03-14 10:46:29,058 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | **************************************
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | **************************************
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | 
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | architecture information:
[2026-03-14 11:47:02] 2026-03-14 10:46:29,059 | INFO     | executing command: cat /etc/os-release
[2026-03-14 11:47:02] 2026-03-14 10:46:29,073 | INFO     | cat /etc/os-release:
[2026-03-14 11:47:02] NAME="CentOS Linux"
[2026-03-14 11:47:02] VERSION="7 (Core)"
[2026-03-14 11:47:02] ID="centos"
[2026-03-14 11:47:02] ID_LIKE="rhel fedora"
[2026-03-14 11:47:02] VERSION_ID="7"
[2026-03-14 11:47:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 11:47:02] ANSI_COLOR="0;31"
[2026-03-14 11:47:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 11:47:02] HOME_URL="https://www.centos.org/"
[2026-03-14 11:47:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 11:47:02] 
[2026-03-14 11:47:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 11:47:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 11:47:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 11:47:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 11:47:02] 
[2026-03-14 11:47:02] 2026-03-14 10:46:29,073 | INFO     | **************************************
[2026-03-14 11:47:02] 2026-03-14 10:46:29,576 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | INFO     | sufficient remaining disk space (327258472448 B)
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | INFO     | update_server=False
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 11:47:02] 2026-03-14 10:46:29,592 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-03-14 11:47:02] 2026-03-14 10:46:29,593 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 11:47:02] 2026-03-14 10:46:29,593 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:47:02] 2026-03-14 10:46:29,593 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 11:47:02] 2026-03-14 10:46:29,593 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 11:47:02] 2026-03-14 10:46:29,752 | INFO     | all job control threads have been joined
[2026-03-14 11:47:02] 2026-03-14 10:46:29,987 | INFO     | all data control threads have been joined
[2026-03-14 11:47:02] 2026-03-14 10:46:30,026 | WARNING  | process 2382225 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 11:47:02] 2026-03-14 10:46:30,056 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 11:47:02] 2026-03-14 10:46:30,096 | INFO     | number of running child processes to parent process 2382225: 1
[2026-03-14 11:47:02] 2026-03-14 10:46:30,096 | INFO     | maximum number of monitored processes: 6
[2026-03-14 11:47:02] 2026-03-14 10:46:30,096 | INFO     | aborting job monitoring since job object (job id=7044815942) has expired
[2026-03-14 11:47:02] 2026-03-14 10:46:30,096 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:47:02] 2026-03-14 10:46:30,096 | INFO     | will abort loop
[2026-03-14 11:47:02] 2026-03-14 10:46:30,501 | INFO     | all payload control threads have been joined
[2026-03-14 11:47:02] 2026-03-14 10:46:30,598 | INFO     | [job] retrieve thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,598 | INFO     | [job] queue monitor thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,692 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,758 | INFO     | [job] control thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,778 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,932 | INFO     | [data] copytool_in thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,947 | INFO     | [payload] validate_post thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:30,993 | INFO     | [data] control thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:31,101 | INFO     | [job] job monitor thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:31,507 | INFO     | [payload] control thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:31,598 | INFO     | [data] copytool_out thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:32,013 | INFO     | [payload] failed_post thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:32,065 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:32,087 | INFO     | [job] validate thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:33,047 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 11:47:02] 2026-03-14 10:46:37,054 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:40,397 | INFO     | job.realtimelogging is not enabled
[2026-03-14 11:47:02] 2026-03-14 10:46:41,403 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 11:47:02] 2026-03-14 10:46:56,086 | INFO     | [monitor] cgroup control has ended
[2026-03-14 11:47:02] 2026-03-14 10:46:57,113 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139640485140288)>', '<ExcThread(monitor, started 139639184684800)>']
[2026-03-14 11:47:02] 2026-03-14 10:46:57,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 11:47:02] 2026-03-14 10:46:57,737 | INFO     | [monitor] control thread has ended
[2026-03-14 11:47:02] 2026-03-14 10:47:02,139 | INFO     | all workflow threads have been joined
[2026-03-14 11:47:02] 2026-03-14 10:47:02,139 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 11:47:02] 2026-03-14 10:47:02,139 | INFO     | traces error code: 0
[2026-03-14 11:47:02] 2026-03-14 10:47:02,139 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 11:47:02] 2026-03-14 10:47:02,213 [wrapper] ==== pilot stdout END ====
[2026-03-14 11:47:02] 2026-03-14 10:47:02,218 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 11:47:02] 2026-03-14 10:47:02,222 [wrapper] pilotpid: 2377728
[2026-03-14 11:47:02] 2026-03-14 10:47:02,225 [wrapper] Pilot exit status: 0
[2026-03-14 11:47:02] 2026-03-14 10:47:02,237 [wrapper] pandaids: 7044815942
[2026-03-14 11:47:02] 2026-03-14 10:47:02,258 [wrapper] cleanup supervisor_pilot 2387775 2377729
[2026-03-14 11:47:02] 2026-03-14 10:47:02,262 [wrapper] Test setup, not cleaning
[2026-03-14 11:47:02] 2026-03-14 10:47:02,266 [wrapper] apfmon messages muted
[2026-03-14 11:47:02] 2026-03-14 10:47:02,270 [wrapper] ==== wrapper stdout END ====
[2026-03-14 11:47:02] 2026-03-14 10:47:02,273 [wrapper] ==== wrapper stderr END ====
[2026-03-14 11:47:02]  *** Error codes and diagnostics ***
[2026-03-14 11:47:02]     "exeErrorCode": 0,
[2026-03-14 11:47:02]     "exeErrorDiag": "",
[2026-03-14 11:47:02]     "pilotErrorCode": 0,
[2026-03-14 11:47:02]     "pilotErrorDiag": "",
[2026-03-14 11:47:02]  *** Listing of results directory ***
[2026-03-14 11:47:02] total 613068
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc    585013 Mar 13 19:06 pilot3.tar.gz
[2026-03-14 11:47:02] -rwx------ 1 boinc boinc     36322 Mar 13 19:07 runpilot2-wrapper.sh
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc      5111 Mar 13 19:08 queuedata.json
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc       100 Mar 14 10:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 11:47:02] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 10:38 run_atlas
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc       105 Mar 14 10:38 job.xml
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc 434574538 Mar 14 10:38 EVNT.46701403._001649.pool.root.1
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc    597530 Mar 14 10:38 input.tar.gz
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc     15845 Mar 14 10:38 start_atlas.sh
[2026-03-14 11:47:02] drwxrwx--x 2 boinc boinc      4096 Mar 14 10:38 shared
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc         0 Mar 14 10:38 boinc_setup_complete
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc      6370 Mar 14 10:38 init_data.xml
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc         0 Mar 14 10:38 boinc_lockfile
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc      2564 Mar 14 10:38 pandaJob.out
[2026-03-14 11:47:02] -rw------- 1 boinc boinc   1004579 Mar 14 10:38 agis_schedconf.cvmfs.json
[2026-03-14 11:47:02] -rw------- 1 boinc boinc   1511579 Mar 14 10:38 agis_ddmendpoints.agis.ALL.json
[2026-03-14 11:47:02] -rw------- 1 boinc boinc       420 Mar 14 10:38 workernode_map.json
[2026-03-14 11:47:02] drwx------ 5 boinc boinc      4096 Mar 14 10:38 pilot3
[2026-03-14 11:47:02] -rw------- 1 boinc boinc 187487694 Mar 14 11:46 HITS.48955010._032762.pool.root.1
[2026-03-14 11:47:02] -rw------- 1 boinc boinc        95 Mar 14 11:46 pilot_heartbeat.json
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc       530 Mar 14 11:46 boinc_task_state.xml
[2026-03-14 11:47:02] -rw------- 1 boinc boinc      1021 Mar 14 11:46 memory_monitor_summary.json
[2026-03-14 11:47:02] -rw------- 1 boinc boinc    292181 Mar 14 11:46 log.48955010._032762.job.log.tgz.1
[2026-03-14 11:47:02] -rw------- 1 boinc boinc      6312 Mar 14 11:46 heartbeat.json
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc      8192 Mar 14 11:47 boinc_mmap_file
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc        27 Mar 14 11:47 wrapper_checkpoint.txt
[2026-03-14 11:47:02] -rw------- 1 boinc boinc      5148 Mar 14 11:47 pilotlog.txt
[2026-03-14 11:47:02] -rw------- 1 boinc boinc    604649 Mar 14 11:47 log.48955010._032762.job.log.1
[2026-03-14 11:47:02] -rw------- 1 boinc boinc       357 Mar 14 11:47 output.list
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc       620 Mar 14 11:47 runtime_log
[2026-03-14 11:47:02] -rw------- 1 boinc boinc    911360 Mar 14 11:47 result.tar.gz
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc      8901 Mar 14 11:47 runtime_log.err
[2026-03-14 11:47:02] -rw------- 1 boinc boinc       658 Mar 14 11:47 K76NDmH6LL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmBqnLDmyYSOwm.diag
[2026-03-14 11:47:02] -rw-r--r-- 1 boinc boinc     12581 Mar 14 11:47 stderr.txt
[2026-03-14 11:47:02] HITS file was successfully produced:
[2026-03-14 11:47:02] -rw------- 1 boinc boinc 187487694 Mar 14 11:46 shared/HITS.pool.root.1
[2026-03-14 11:47:02]  *** Contents of shared directory: ***
[2026-03-14 11:47:02] total 608984
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc 434574538 Mar 14 10:38 ATLAS.root_0
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc    597530 Mar 14 10:38 input.tar.gz
[2026-03-14 11:47:02] -rw-r--r-- 2 boinc boinc     15845 Mar 14 10:38 start_atlas.sh
[2026-03-14 11:47:02] -rw------- 1 boinc boinc 187487694 Mar 14 11:46 HITS.pool.root.1
[2026-03-14 11:47:02] -rw------- 1 boinc boinc    911360 Mar 14 11:47 result.tar.gz
11:47:03 (2373618): run_atlas exited; CPU time 14869.886929
11:47:03 (2373618): called boinc_finish(0)

</stderr_txt>
]]>

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