Stderr output

<core_client_version>8.2.1</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-18 11:55:30 (25455): vboxwrapper version 26210
2026-03-18 11:55:30 (25455): BOINC client version: 8.2.1
2026-03-18 11:55:30 (25455): Detected: VirtualBox VboxManage Interface (Version: 7.1.8)
2026-03-18 11:55:30 (25455): Detected: Sandbox Configuration Enabled
2026-03-18 11:55:30 (25455): Successfully copied 'init_data.xml' to the shared directory.
2026-03-18 11:55:30 (25455): Create VM. (boinc_55fd74b56cbc9d47, slot#1)
2026-03-18 11:55:31 (25455): Setting Memory Size for VM. (4800MB)
2026-03-18 11:55:31 (25455): Setting CPU Count for VM. (8)
2026-03-18 11:55:31 (25455): Setting Chipset Options for VM.
2026-03-18 11:55:31 (25455): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-18 11:55:31 (25455): Setting Boot Options for VM.
2026-03-18 11:55:31 (25455): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-18 11:55:31 (25455): Enabling VM Network Access.
2026-03-18 11:55:31 (25455): Disabling USB Support for VM.
2026-03-18 11:55:31 (25455): Disabling COM Port Support for VM.
2026-03-18 11:55:31 (25455): Disabling Audio Support for VM.
2026-03-18 11:55:31 (25455): Disabling Clipboard Support for VM.
2026-03-18 11:55:31 (25455): Disabling Drag and Drop Support for VM.
2026-03-18 11:55:31 (25455): Adding storage controller(s) to VM.
2026-03-18 11:55:31 (25455): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-18 11:55:32 (25455): Adding VirtualBox Guest Additions to VM.
2026-03-18 11:55:32 (25455): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-18 11:55:32 (25455): forwarding host port 49318 to guest port 80
2026-03-18 11:55:32 (25455): Enabling remote desktop for VM.
2026-03-18 11:55:32 (25455): Enabling shared directory for VM.
2026-03-18 11:55:32 (25455): Starting VM using VBoxManage interface. (boinc_55fd74b56cbc9d47, slot#1)
2026-03-18 11:55:35 (25455): Successfully started VM. (PID = '25530')
2026-03-18 11:55:35 (25455): Reporting VM Process ID to BOINC.
2026-03-18 11:55:35 (25455): Guest Log: BIOS: VirtualBox 7.1.8
2026-03-18 11:55:35 (25455): Guest Log: CPUID EDX: 0x178bfbff
2026-03-18 11:55:35 (25455): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-18 11:55:35 (25455): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-18 11:55:35 (25455): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-18 11:55:35 (25455): Detected: Web Application Enabled (http://localhost:49318)
2026-03-18 11:55:35 (25455): Detected: Remote Desktop Enabled (localhost:49319)
2026-03-18 11:55:35 (25455): Preference change detected
2026-03-18 11:55:35 (25455): Setting CPU throttle for VM. (100%)
2026-03-18 11:55:35 (25455): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 180 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-18 11:55:37 (25455): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-18 11:55:37 (25455): Guest Log: BIOS: Booting from Hard Disk...
2026-03-18 11:55:40 (25455): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-18 11:55:40 (25455): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-18 11:55:40 (25455): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-18 11:55:45 (25455): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-18 11:55:45 (25455): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-18 11:55:50 (25455): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000614 main     Log opened 2026-03-18T15:55:49.168934000Z
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000718 main     OS Product: Linux
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000757 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000793 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000830 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000831 main     Process ID: 1377
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.000831 main     Package type: LINUX_64BITS_GENERIC
2026-03-18 11:55:50 (25455): Guest Log: 00:00:00.002023 main     5.2.32 r132073 started. Verbose level = 0
2026-03-18 11:55:51 (25455): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-18 11:55:51 (25455): Guest Log: [INFO] Mounting shared directory
2026-03-18 11:55:51 (25455): Guest Log: [INFO] Checking for init_data.xml
2026-03-18 11:56:01 (25455): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-18 11:56:01 (25455): Guest Log: [INFO] Detected branch: prod
2026-03-18 11:56:02 (25455): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-18 11:56:02 (25455): Guest Log: Copying input files
2026-03-18 11:56:05 (25455): Guest Log: Copied input files into RunAtlas.
2026-03-18 11:56:06 (25455): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-18 11:56:06 (25455): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-18 11:56:06 (25455): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-18 11:56:06 (25455): Guest Log: Further information can be found at the LHC@home message board.
2026-03-18 11:56:16 (25455): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-18 11:56:16 (25455): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-18 11:56:16 (25455): Guest Log: 2.6.3.0 1660 0 32164 157422 4 1 3117744 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-03-18 11:56:17 (25455): Guest Log: copied the webapp to /var/www
2026-03-18 11:56:17 (25455): Guest Log: ATHENA_PROC_NUMBER=8
2026-03-18 11:56:17 (25455): Guest Log: ATHENA_CORE_NUMBER=8
2026-03-18 11:56:17 (25455): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-18 11:56:17 (25455): Guest Log:  *** Starting ATLAS job. (PandaID=7044752347 taskID=48955010) ***
2026-03-18 13:31:00 (25455): Guest Log:  *** Job finished ***
2026-03-18 13:31:00 (25455): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:44,742 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:44,742 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:54,820 | INFO     | [monitor] cgroup control has ended
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:54,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140399017264960)>', '<ExcThread(monitor, started 140397841999616)>']
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:54,862 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:54,862 | INFO     | [monitor] control thread has ended
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,876 | INFO     | all workflow threads have been joined
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,876 | INFO     | end of generic workflow (traces error code: 0)
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,876 | INFO     | traces error code: 0
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,876 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,943 [wrapper] ==== pilot stdout END ====
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,949 [wrapper] ==== wrapper stdout RESUME ====
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,956 [wrapper] pilotpid: 6120
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:30:59,962 [wrapper] Pilot exit status: 0
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,196 [wrapper] pandaids: 7044752347
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,243 [wrapper] cleanup supervisor_pilot 25884 6121
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,251 [wrapper] Test setup, not cleaning
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,258 [wrapper] apfmon messages muted
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,265 [wrapper] ==== wrapper stdout END ====
2026-03-18 13:31:00 (25455): Guest Log: 2026-03-18 17:31:00,272 [wrapper] ==== wrapper stderr END ====
2026-03-18 13:31:00 (25455): Guest Log:  *** Error codes and diagnostics ***
2026-03-18 13:31:00 (25455): Guest Log:     "exeErrorCode": 68,
2026-03-18 13:31:00 (25455): Guest Log:     "exeErrorDiag": "Fatal error in athena logfile: \"Long FATAL message at line 56410 (see jobReport for further details)\"",
2026-03-18 13:31:00 (25455): Guest Log:     "pilotErrorCode": 1305,
2026-03-18 13:31:00 (25455): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformLogfileErrorException: Fatal error in athena logfile: \"Long FATAL message at line 56410 (see jobReport for further details)\"",
2026-03-18 13:31:00 (25455): Guest Log:  *** Listing of results directory ***
2026-03-18 13:31:00 (25455): Guest Log: total 5964
2026-03-18 13:31:00 (25455): Guest Log: -rwx------. 1 atlas atlas   36322 Mar 13 17:10 runpilot2-wrapper.sh
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Mar 13 17:12 queuedata.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas  585013 Mar 13 17:12 pilot3.tar.gz
2026-03-18 13:31:00 (25455): Guest Log: -rw-r-----. 1 atlas atlas   15845 Mar 18 15:56 start_atlas.sh
2026-03-18 13:31:00 (25455): Guest Log: -rw-r-----. 1 atlas atlas  597535 Mar 18 15:56 input.tar.gz
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas    8082 Mar 18 15:56 init_data.xml
2026-03-18 13:31:00 (25455): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 18 15:56 EVNT.46701403._001640.pool.root.1 -> /data/./ATLAS.root_0
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas    2564 Mar 18 15:56 pandaJob.out
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas 1011286 Mar 18 15:57 agis_schedconf.cvmfs.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas 1511579 Mar 18 15:57 agis_ddmendpoints.agis.ALL.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas     421 Mar 18 15:57 workernode_map.json
2026-03-18 13:31:00 (25455): Guest Log: drwx------. 5 atlas atlas    4096 Mar 18 15:57 pilot3
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas    1033 Mar 18 17:25 memory_monitor_summary.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas  357085 Mar 18 17:28 log.48955010._032299.job.log.tgz.1
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas      95 Mar 18 17:30 pilot_heartbeat.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas    7826 Mar 18 17:30 heartbeat.json
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas    4801 Mar 18 17:30 pilotlog.txt
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas  762115 Mar 18 17:31 log.48955010._032299.job.log.1
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas     188 Mar 18 17:31 output.list
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 18 17:31 runtime_log
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas 1136640 Mar 18 17:31 result.tar.gz
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 atlas atlas    8634 Mar 18 17:31 runtime_log.err
2026-03-18 13:31:00 (25455): Guest Log: -rw-------. 1 atlas atlas     671 Mar 18 17:31 lkFKDmBDLL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmzfnLDm12znYn.diag
2026-03-18 13:31:00 (25455): Guest Log: Looking for outputfile HITS.48955010._032299.pool.root.1
2026-03-18 13:31:00 (25455): Guest Log: No HITS file was produced
2026-03-18 13:31:00 (25455): Guest Log: Successfully finished the ATLAS job!
2026-03-18 13:31:00 (25455): Guest Log: Copying the results back to the shared directory!
2026-03-18 13:31:00 (25455): Guest Log:  *** Contents of shared directory: ***
2026-03-18 13:31:00 (25455): Guest Log: total 444152
2026-03-18 13:31:00 (25455): Guest Log: -rw-rw----. 1 root root 442586835 Mar 18 15:55 ATLAS.root_0
2026-03-18 13:31:00 (25455): Guest Log: -rw-rw-r--. 1 root root      8082 Mar 18 15:55 init_data.xml
2026-03-18 13:31:00 (25455): Guest Log: -rw-rw----. 1 root root    597535 Mar 18 15:55 input.tar.gz
2026-03-18 13:31:00 (25455): Guest Log: -rw-r--r--. 1 root root   1136640 Mar 18 17:30 result.tar.gz
2026-03-18 13:31:00 (25455): Guest Log: -rw-rw----. 1 root root     15845 Mar 18 15:55 start_atlas.sh
2026-03-18 13:31:00 (25455): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-18 13:31:00 (25455): VM Completion File Detected.
2026-03-18 13:31:00 (25455): Powering off VM.
2026-03-18 13:31:00 (25455): Successfully stopped VM.
2026-03-18 13:31:00 (25455): Deregistering VM. (boinc_55fd74b56cbc9d47, slot#1)
2026-03-18 13:31:00 (25455): Removing network bandwidth throttle group from VM.
2026-03-18 13:31:00 (25455): Removing VM from VirtualBox.
2026-03-18 13:31:05 (25455): called boinc_finish(0)

</stderr_txt>
]]>

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