Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:27:55 (23979): wrapper (7.7.26015): starting
02:27:55 (23979): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 02:27:55] Arguments: --nthreads 8
[2026-03-14 02:27:55] Threads: 8
[2026-03-14 02:27:55] Checking for CVMFS
[2026-03-14 02:27:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 02:27:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 02:27:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 02:27:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 02:27:55] 2.11.2.0 4221 126914 105156 157260 2 73 22889685 25165824 96 130560 157 37653500 99.821 26860984 869 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 02:27:55] CVMFS is ok
[2026-03-14 02:27:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 02:27:55] Checking for apptainer binary...
[2026-03-14 02:27:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 02:27:55] Running /usr/bin/apptainer --version
[2026-03-14 02:27:55] apptainer version 1.3.2-1.el7
[2026-03-14 02:27:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 02:27:57] cg-vwn381.simple-grid.lan
[2026-03-14 02:27:57] apptainer works
[2026-03-14 02:27:57] Set ATHENA_PROC_NUMBER=8
[2026-03-14 02:27:57] Set ATHENA_CORE_NUMBER=8
[2026-03-14 02:27:57] Starting ATLAS job with PandaID=7044026642
[2026-03-14 02:27:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/23 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 06:12:56]  *** The last 200 lines of the pilot log: ***
[2026-03-14 06:12:56] 2026-03-14 05:12:07,966 | INFO     | job 7044026642 has finished - writing final server update
[2026-03-14 06:12:56] 2026-03-14 05:12:07,966 | INFO     | total number of processed events: 400 (read)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,968 | INFO     | using path: /var/lib/boinc/slots/23/PanDA_Pilot-7044026642/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,969 | INFO     | extracted standard info from prmon json
[2026-03-14 06:12:56] 2026-03-14 05:12:07,969 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 06:12:56] 2026-03-14 05:12:07,969 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 06:12:56] 2026-03-14 05:12:07,969 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 06:12:56] 2026-03-14 05:12:07,970 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 06:12:56] 2026-03-14 05:12:07,977 | INFO     | fitting pss+swap vs Time
[2026-03-14 06:12:56] 2026-03-14 05:12:07,978 | INFO     | sum of square deviations: 3301699115.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,979 | INFO     | sum of deviations: -33229704463.49999
[2026-03-14 06:12:56] 2026-03-14 05:12:07,980 | INFO     | mean x: 1773458411.5
[2026-03-14 06:12:56] 2026-03-14 05:12:07,980 | INFO     | mean y: 2504895.922727273
[2026-03-14 06:12:56] 2026-03-14 05:12:07,980 | INFO     | intersect: 17851344793.150352
[2026-03-14 06:12:56] 2026-03-14 05:12:07,980 | INFO     | chi2: 2.5464748571624445
[2026-03-14 06:12:56] 2026-03-14 05:12:07,981 | INFO     | sum of square deviations: 3081657780.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,982 | INFO     | sum of deviations: -17377998054.000004
[2026-03-14 06:12:56] 2026-03-14 05:12:07,983 | INFO     | mean x: 1773458259.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,983 | INFO     | mean y: 2515690.772093023
[2026-03-14 06:12:56] 2026-03-14 05:12:07,983 | INFO     | intersect: 10003351725.76889
[2026-03-14 06:12:56] 2026-03-14 05:12:07,983 | INFO     | chi2: 1.7176648723531847
[2026-03-14 06:12:56] 2026-03-14 05:12:07,983 | INFO     | current chi2=1.7176648723531847 (change=32.54734608818438 %)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,984 | INFO     | sum of square deviations: 2871616632.5
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | sum of deviations: -16732093606.499992
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | mean x: 1773458106.5
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | mean y: 2516159.814285714
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | intersect: 10335952284.026535
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | chi2: 1.716425265832482
[2026-03-14 06:12:56] 2026-03-14 05:12:07,986 | INFO     | current chi2=1.716425265832482 (change=0.07216812433292145 %)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,987 | INFO     | right removable region: 209
[2026-03-14 06:12:56] 2026-03-14 05:12:07,987 | INFO     | sum of square deviations: 3081657780.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,989 | INFO     | sum of deviations: -66968758378.00001
[2026-03-14 06:12:56] 2026-03-14 05:12:07,989 | INFO     | mean x: 1773458564.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,989 | INFO     | mean y: 2528040.488372093
[2026-03-14 06:12:56] 2026-03-14 05:12:07,989 | INFO     | intersect: 38542277274.39288
[2026-03-14 06:12:56] 2026-03-14 05:12:07,989 | INFO     | chi2: 1.071929478937118
[2026-03-14 06:12:56] 2026-03-14 05:12:07,990 | INFO     | current chi2=1.071929478937118 (change=57.905357835279126 %)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,990 | INFO     | sum of square deviations: 2871616632.5
[2026-03-14 06:12:56] 2026-03-14 05:12:07,992 | INFO     | sum of deviations: -63196160918.000015
[2026-03-14 06:12:56] 2026-03-14 05:12:07,992 | INFO     | mean x: 1773458716.5
[2026-03-14 06:12:56] 2026-03-14 05:12:07,992 | INFO     | mean y: 2525273.4
[2026-03-14 06:12:56] 2026-03-14 05:12:07,992 | INFO     | intersect: 39031336139.35175
[2026-03-14 06:12:56] 2026-03-14 05:12:07,993 | INFO     | chi2: 1.0629919550811555
[2026-03-14 06:12:56] 2026-03-14 05:12:07,993 | INFO     | current chi2=1.0629919550811555 (change=0.8337790900969221 %)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,993 | INFO     | left removable region: 20
[2026-03-14 06:12:56] 2026-03-14 05:12:07,993 | INFO     | sum of square deviations: 2093397390.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,995 | INFO     | sum of deviations: -33182201110.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,995 | INFO     | mean x: 1773458686.0
[2026-03-14 06:12:56] 2026-03-14 05:12:07,995 | INFO     | mean y: 2527263.1587301586
[2026-03-14 06:12:56] 2026-03-14 05:12:07,995 | INFO     | intersect: 28113416796.2389
[2026-03-14 06:12:56] 2026-03-14 05:12:07,995 | INFO     | chi2: 0.18483913081638614
[2026-03-14 06:12:56] 2026-03-14 05:12:07,996 | INFO     | current memory leak: -15.85 B/s (using 189 data points, chi2=0.18)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,996 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-14 06:12:56] 2026-03-14 05:12:07,996 | INFO     | ..............................
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . Timing measurements:
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . get job = 0 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . initial setup = 8 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . payload setup = 9 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . stage-in = 0 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . payload execution = 13391 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . stage-out = 4 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | . log creation = 1 s
[2026-03-14 06:12:56] 2026-03-14 05:12:07,997 | INFO     | ..............................
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | 
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | job summary report
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | --------------------------------------------------
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | PanDA job id: 7044026642
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | task id: 48955015
[2026-03-14 06:12:56] 2026-03-14 05:12:08,163 | INFO     | errors: (none)
[2026-03-14 06:12:56] 2026-03-14 05:12:08,164 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 06:12:56] 2026-03-14 05:12:08,164 | INFO     | pilot state: finished 
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | transexitcode: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | exeerrorcode: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | exeerrordiag: 
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | exitcode: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | exitmsg: OK
[2026-03-14 06:12:56] 2026-03-14 05:12:08,171 | INFO     | cpuconsumptiontime: 52120 s
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | nevents: 400
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | neventsw: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | pid: 32112
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | pgrp: 32112
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | corecount: 8
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | event service: False
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | sizes: {0: 2279804, 1: 2280265, 12: 2280265, 13404: 2310583, 13405: 2310582, 13409: 2319638, 13412: 2319822, 13414: 2320016}
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | --------------------------------------------------
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | 
[2026-03-14 06:12:56] 2026-03-14 05:12:08,172 | INFO     | executing command: ls -lF /var/lib/boinc/slots/23
[2026-03-14 06:12:56] 2026-03-14 05:12:08,253 | INFO     | time since job start (13426s) is within the limit (345600.0s)
[2026-03-14 06:12:56] 2026-03-14 05:12:08,598 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,599 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 06:12:56] 2026-03-14 05:12:08,600 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,601 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 06:12:56] 2026-03-14 05:12:08,601 | INFO     | job 7044026642 has completed (purged errors)
[2026-03-14 06:12:56] 2026-03-14 05:12:08,601 | INFO     | overall cleanup function is called
[2026-03-14 06:12:56] 2026-03-14 05:12:09,610 | INFO     | --- collectZombieJob: --- 10, [32112]
[2026-03-14 06:12:56] 2026-03-14 05:12:09,610 | INFO     | zombie collector waiting for pid 32112
[2026-03-14 06:12:56] 2026-03-14 05:12:09,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 06:12:56] 2026-03-14 05:12:09,610 | INFO     | collected zombie processes
[2026-03-14 06:12:56] 2026-03-14 05:12:09,611 | INFO     | will attempt to kill all subprocesses of pid=32112
[2026-03-14 06:12:56] 2026-03-14 05:12:09,695 | INFO     | process IDs to be killed: [32112] (in reverse order)
[2026-03-14 06:12:56] 2026-03-14 05:12:10,472 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 06:12:56] 2026-03-14 05:12:10,473 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 06:12:56] 2026-03-14 05:12:10,475 | INFO     | did not find any defunct processes belonging to 32112
[2026-03-14 06:12:56] 2026-03-14 05:12:10,476 | INFO     | did not find any defunct processes belonging to 32112
[2026-03-14 06:12:56] 2026-03-14 05:12:10,476 | INFO     | ready for new job
[2026-03-14 06:12:56] 2026-03-14 05:12:10,477 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 06:12:56] 2026-03-14 05:12:10,478 | INFO     | **************************************
[2026-03-14 06:12:56] 2026-03-14 05:12:10,479 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 06:12:56] 2026-03-14 05:12:10,479 | INFO     | **************************************
[2026-03-14 06:12:56] 2026-03-14 05:12:10,479 | INFO     | 
[2026-03-14 06:12:56] 2026-03-14 05:12:10,479 | INFO     | pilot is running in a VM
[2026-03-14 06:12:56] 2026-03-14 05:12:10,480 | INFO     | architecture information:
[2026-03-14 06:12:56] 2026-03-14 05:12:10,486 | INFO     | executing command: cat /etc/os-release
[2026-03-14 06:12:56] 2026-03-14 05:12:10,726 | INFO     | cat /etc/os-release:
[2026-03-14 06:12:56] NAME="CentOS Linux"
[2026-03-14 06:12:56] VERSION="7 (Core)"
[2026-03-14 06:12:56] ID="centos"
[2026-03-14 06:12:56] ID_LIKE="rhel fedora"
[2026-03-14 06:12:56] VERSION_ID="7"
[2026-03-14 06:12:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 06:12:56] ANSI_COLOR="0;31"
[2026-03-14 06:12:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 06:12:56] HOME_URL="https://www.centos.org/"
[2026-03-14 06:12:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 06:12:56] 
[2026-03-14 06:12:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 06:12:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 06:12:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 06:12:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 06:12:56] 
[2026-03-14 06:12:56] 2026-03-14 05:12:10,727 | INFO     | **************************************
[2026-03-14 06:12:56] 2026-03-14 05:12:11,230 | INFO     | executing command: df -mP /var/lib/boinc/slots/23
[2026-03-14 06:12:56] 2026-03-14 05:12:11,499 | INFO     | sufficient remaining disk space (495931359232 B)
[2026-03-14 06:12:56] 2026-03-14 05:12:11,499 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 06:12:56] 2026-03-14 05:12:11,499 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 06:12:56] 2026-03-14 05:12:11,499 | INFO     | update_server=False
[2026-03-14 06:12:56] 2026-03-14 05:12:11,499 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 06:12:56] 2026-03-14 05:12:11,502 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 06:12:56] 2026-03-14 05:12:11,604 | INFO     | all job control threads have been joined
[2026-03-14 06:12:56] 2026-03-14 05:12:11,993 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:12:56] 2026-03-14 05:12:11,993 | INFO     | aborting loop
[2026-03-14 06:12:56] 2026-03-14 05:12:12,032 | INFO     | all payload control threads have been joined
[2026-03-14 06:12:56] 2026-03-14 05:12:12,499 | INFO     | all data control threads have been joined
[2026-03-14 06:12:56] 2026-03-14 05:12:12,506 | INFO     | [job] retrieve thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,526 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,610 | INFO     | [job] control thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,671 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 06:12:56] 2026-03-14 05:12:12,716 | INFO     | [job] validate thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,816 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,909 | INFO     | [payload] validate_post thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:12,999 | INFO     | [job] job monitor thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,038 | INFO     | [payload] control thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,078 | INFO     | [payload] failed_post thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,177 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:12:56] 2026-03-14 05:12:13,505 | INFO     | [data] control thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,509 | INFO     | [data] copytool_out thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,527 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,860 | INFO     | [data] copytool_in thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:13,868 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:14,183 | INFO     | [job] queue monitor thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:16,682 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 06:12:56] 2026-03-14 05:12:41,367 | INFO     | PID=27697 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 06:12:56] 2026-03-14 05:12:41,367 | INFO     | .. there are 2 such processes running
[2026-03-14 06:12:56] 2026-03-14 05:12:41,367 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 06:12:56] 2026-03-14 05:12:41,367 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 06:12:56] 2026-03-14 05:12:41,368 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 06:12:56] 2026-03-14 05:12:45,157 | INFO     | [monitor] cgroup control has ended
[2026-03-14 06:12:56] 2026-03-14 05:12:45,404 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139766692353856)>', '<ExcThread(monitor, started 139766238516992)>']
[2026-03-14 06:12:56] 2026-03-14 05:12:46,397 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 06:12:56] 2026-03-14 05:12:46,397 | INFO     | [monitor] control thread has ended
[2026-03-14 06:12:56] 2026-03-14 05:12:50,430 | INFO     | all workflow threads have been joined
[2026-03-14 06:12:56] 2026-03-14 05:12:50,430 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 06:12:56] 2026-03-14 05:12:50,430 | INFO     | traces error code: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:50,431 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 06:12:56] 2026-03-14 05:12:50,915 [wrapper] ==== pilot stdout END ====
[2026-03-14 06:12:56] 2026-03-14 05:12:51,019 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 06:12:56] 2026-03-14 05:12:51,125 [wrapper] pilotpid: 27697
[2026-03-14 06:12:56] 2026-03-14 05:12:51,229 [wrapper] Pilot exit status: 0
[2026-03-14 06:12:56] 2026-03-14 05:12:51,807 [wrapper] pandaids: 7044026642
[2026-03-14 06:12:56] 2026-03-14 05:12:52,843 [wrapper] cleanup supervisor_pilot  5447 27698
[2026-03-14 06:12:56] 2026-03-14 05:12:52,946 [wrapper] Test setup, not cleaning
[2026-03-14 06:12:56] 2026-03-14 05:12:53,021 [wrapper] apfmon messages muted
[2026-03-14 06:12:56] 2026-03-14 05:12:53,131 [wrapper] ==== wrapper stdout END ====
[2026-03-14 06:12:56] 2026-03-14 05:12:53,215 [wrapper] ==== wrapper stderr END ====
[2026-03-14 06:12:56]  *** Error codes and diagnostics ***
[2026-03-14 06:12:56]     "exeErrorCode": 0,
[2026-03-14 06:12:56]     "exeErrorDiag": "",
[2026-03-14 06:12:56]     "pilotErrorCode": 0,
[2026-03-14 06:12:56]     "pilotErrorDiag": "",
[2026-03-14 06:12:56]  *** Listing of results directory ***
[2026-03-14 06:12:56] total 610076
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc    585013 Mar 13 13:53 pilot3.tar.gz
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc      5111 Mar 13 13:56 queuedata.json
[2026-03-14 06:12:56] -rwx------. 1 boinc boinc     36322 Mar 13 13:56 runpilot2-wrapper.sh
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc       100 Mar 14 02:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 06:12:56] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 02:27 run_atlas
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc       105 Mar 14 02:27 job.xml
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc      6392 Mar 14 02:27 init_data.xml
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc 435039244 Mar 14 02:27 EVNT.46701403._002368.pool.root.1
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:27 start_atlas.sh
[2026-03-14 06:12:56] drwxrwx--x. 2 boinc boinc        68 Mar 14 02:27 shared
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc    597533 Mar 14 02:27 input.tar.gz
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc         0 Mar 14 02:27 boinc_lockfile
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc      2571 Mar 14 02:27 pandaJob.out
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc   1006713 Mar 14 02:28 agis_schedconf.cvmfs.json
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc       415 Mar 14 02:28 workernode_map.json
[2026-03-14 06:12:56] drwx------. 5 boinc boinc      4096 Mar 14 02:28 pilot3
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc 181079295 Mar 14 06:10 HITS.48955015._015666.pool.root.1
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc       531 Mar 14 06:10 boinc_task_state.xml
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc        95 Mar 14 06:11 pilot_heartbeat.json
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc      1033 Mar 14 06:11 memory_monitor_summary.json
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc   1511579 Mar 14 06:11 agis_ddmendpoints.agis.ALL.json
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc    455265 Mar 14 06:12 log.48955015._015666.job.log.tgz.1
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc      6325 Mar 14 06:12 heartbeat.json
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc      4881 Mar 14 06:12 pilotlog.txt
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc   1886633 Mar 14 06:12 log.48955015._015666.job.log.1
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc       357 Mar 14 06:12 output.list
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc        28 Mar 14 06:12 wrapper_checkpoint.txt
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc       620 Mar 14 06:12 runtime_log
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc   2355200 Mar 14 06:12 result.tar.gz
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc      8832 Mar 14 06:12 runtime_log.err
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc       655 Mar 14 06:12 JgdMDmGFHL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkumLDm8PT3Io.diag
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc      8192 Mar 14 06:12 boinc_mmap_file
[2026-03-14 06:12:56] -rw-r--r--. 1 boinc boinc     20732 Mar 14 06:12 stderr.txt
[2026-03-14 06:12:56] HITS file was successfully produced:
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc 181079295 Mar 14 06:10 shared/HITS.pool.root.1
[2026-03-14 06:12:56]  *** Contents of shared directory: ***
[2026-03-14 06:12:56] total 604580
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc 435039244 Mar 14 02:27 ATLAS.root_0
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:27 start_atlas.sh
[2026-03-14 06:12:56] -rw-r--r--. 2 boinc boinc    597533 Mar 14 02:27 input.tar.gz
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc 181079295 Mar 14 06:10 HITS.pool.root.1
[2026-03-14 06:12:56] -rw-------. 1 boinc boinc   2355200 Mar 14 06:12 result.tar.gz
06:12:58 (23979): run_atlas exited; CPU time 52247.916656
06:12:58 (23979): called boinc_finish(0)

</stderr_txt>
]]>

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