Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:38:19 (13743): wrapper (7.7.26015): starting
02:38:19 (13743): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 02:38:19] Arguments: --nthreads 8
[2026-03-14 02:38:19] Threads: 8
[2026-03-14 02:38:19] Checking for CVMFS
[2026-03-14 02:38:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 02:38:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 02:38:21] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 02:38:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 02:38:22] 2.11.2.0 13921 126908 138168 157260 3 53 16766364 25165824 4606 130560 152 43977154 99.820 34635936 1114 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 02:38:22] CVMFS is ok
[2026-03-14 02:38:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 02:38:22] Checking for apptainer binary...
[2026-03-14 02:38:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 02:38:22] Running /usr/bin/apptainer --version
[2026-03-14 02:38:23] apptainer version 1.3.2-1.el7
[2026-03-14 02:38:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 02:38:33] cg-vwn367.simple-grid.lan
[2026-03-14 02:38:33] apptainer works
[2026-03-14 02:38:33] Set ATHENA_PROC_NUMBER=8
[2026-03-14 02:38:33] Set ATHENA_CORE_NUMBER=8
[2026-03-14 02:38:34] Starting ATLAS job with PandaID=7039300884
[2026-03-14 02:38:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 06:48:41]  *** The last 200 lines of the pilot log: ***
[2026-03-14 06:48:41] 2026-03-14 05:47:52,719 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 06:48:41] 2026-03-14 05:47:52,840 | INFO     | job 7039300884 has state=finished
[2026-03-14 06:48:41] 2026-03-14 05:47:52,841 | INFO     | preparing for final server update for job 7039300884 in state='finished'
[2026-03-14 06:48:41] 2026-03-14 05:47:52,841 | INFO     | reading metadata from: /var/lib/boinc/slots/9/PanDA_Pilot-7039300884/jobReport.json
[2026-03-14 06:48:41] 2026-03-14 05:47:52,844 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/9/workernode_map.json
[2026-03-14 06:48:41] 2026-03-14 05:47:52,844 | INFO     | this job has now completed (state=finished)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,844 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,844 | INFO     | log transfer has been attempted: DONE
[2026-03-14 06:48:41] 2026-03-14 05:47:52,844 | INFO     | job 7039300884 has finished - writing final server update
[2026-03-14 06:48:41] 2026-03-14 05:47:52,845 | INFO     | total number of processed events: 400 (read)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,847 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7039300884/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,847 | INFO     | extracted standard info from prmon json
[2026-03-14 06:48:41] 2026-03-14 05:47:52,848 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 06:48:41] 2026-03-14 05:47:52,848 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 06:48:41] 2026-03-14 05:47:52,848 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 06:48:41] 2026-03-14 05:47:52,848 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 06:48:41] 2026-03-14 05:47:52,853 | INFO     | fitting pss+swap vs Time
[2026-03-14 06:48:41] 2026-03-14 05:47:52,853 | INFO     | sum of square deviations: 4024149870.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,855 | INFO     | sum of deviations: 53478045165.000015
[2026-03-14 06:48:41] 2026-03-14 05:47:52,856 | INFO     | mean x: 1773460100.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,856 | INFO     | mean y: 2453710.6765957447
[2026-03-14 06:48:41] 2026-03-14 05:47:52,856 | INFO     | intersect: -23565550064.025124
[2026-03-14 06:48:41] 2026-03-14 05:47:52,856 | INFO     | chi2: 4.549051871407722
[2026-03-14 06:48:41] 2026-03-14 05:47:52,857 | INFO     | sum of square deviations: 3772712597.5
[2026-03-14 06:48:41] 2026-03-14 05:47:52,859 | INFO     | sum of deviations: 67545451096.999985
[2026-03-14 06:48:41] 2026-03-14 05:47:52,859 | INFO     | mean x: 1773459947.5
[2026-03-14 06:48:41] 2026-03-14 05:47:52,859 | INFO     | mean y: 2462079.6260869564
[2026-03-14 06:48:41] 2026-03-14 05:47:52,859 | INFO     | intersect: -31749002963.252632
[2026-03-14 06:48:41] 2026-03-14 05:47:52,859 | INFO     | chi2: 3.8071596676799078
[2026-03-14 06:48:41] 2026-03-14 05:47:52,860 | INFO     | current chi2=3.8071596676799078 (change=16.30872156879216 %)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,860 | INFO     | right removable region: 229
[2026-03-14 06:48:41] 2026-03-14 05:47:52,860 | INFO     | sum of square deviations: 3772712597.5
[2026-03-14 06:48:41] 2026-03-14 05:47:52,862 | INFO     | sum of deviations: -17489175891.499996
[2026-03-14 06:48:41] 2026-03-14 05:47:52,862 | INFO     | mean x: 1773460252.5
[2026-03-14 06:48:41] 2026-03-14 05:47:52,862 | INFO     | mean y: 2496675.4565217393
[2026-03-14 06:48:41] 2026-03-14 05:47:52,863 | INFO     | intersect: 8223732057.422692
[2026-03-14 06:48:41] 2026-03-14 05:47:52,863 | INFO     | chi2: 1.0188233710253782
[2026-03-14 06:48:41] 2026-03-14 05:47:52,863 | INFO     | current chi2=1.0188233710253782 (change=77.60361060226603 %)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,864 | INFO     | sum of square deviations: 3531973200.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,865 | INFO     | sum of deviations: -27830311515.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | mean x: 1773460405.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | mean y: 2503172.4266666668
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | intersect: 13976549048.72835
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | chi2: 0.902435056712071
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | current chi2=0.902435056712071 (change=11.423797060737826 %)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,866 | INFO     | left removable region: 20
[2026-03-14 06:48:41] 2026-03-14 05:47:52,867 | INFO     | sum of square deviations: 2830787960.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,868 | INFO     | sum of deviations: -541133440.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,868 | INFO     | mean x: 1773460527.0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,869 | INFO     | mean y: 2504294.7033492825
[2026-03-14 06:48:41] 2026-03-14 05:47:52,869 | INFO     | intersect: 341519017.5438841
[2026-03-14 06:48:41] 2026-03-14 05:47:52,869 | INFO     | chi2: 0.05349899579576397
[2026-03-14 06:48:41] 2026-03-14 05:47:52,869 | INFO     | current memory leak: -0.19 B/s (using 209 data points, chi2=0.05)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | could have reported an average CPU frequency of 1999 MHz (12 samples)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | ..............................
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | . Timing measurements:
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | . get job = 0 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | . initial setup = 95 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,870 | INFO     | . payload setup = 140 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,871 | INFO     | . stage-in = 0 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,871 | INFO     | . payload execution = 14413 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,871 | INFO     | . stage-out = 3 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,871 | INFO     | . log creation = 1 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,871 | INFO     | ..............................
[2026-03-14 06:48:41] 2026-03-14 05:47:52,988 | INFO     | 
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | job summary report
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | --------------------------------------------------
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | PanDA job id: 7039300884
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | task id: 48955010
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | errors: (none)
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | pilot state: finished 
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | transexitcode: 0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,989 | INFO     | exeerrorcode: 0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | exeerrordiag: 
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | exitcode: 0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | exitmsg: OK
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | cpuconsumptiontime: 54667 s
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | nevents: 400
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | neventsw: 0
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | pid: 22409
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | pgrp: 22409
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | corecount: 8
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | event service: False
[2026-03-14 06:48:41] 2026-03-14 05:47:52,990 | INFO     | sizes: {0: 2279087, 1: 2279772, 2: 2280233, 14557: 2311070, 14558: 2311069, 14562: 2320445}
[2026-03-14 06:48:41] 2026-03-14 05:47:52,991 | INFO     | --------------------------------------------------
[2026-03-14 06:48:41] 2026-03-14 05:47:52,991 | INFO     | 
[2026-03-14 06:48:41] 2026-03-14 05:47:52,991 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-03-14 06:48:41] 2026-03-14 05:47:53,479 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,479 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,481 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 06:48:41] 2026-03-14 05:47:53,482 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,482 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 06:48:41] 2026-03-14 05:47:53,482 | INFO     | job 7039300884 has completed (purged errors)
[2026-03-14 06:48:41] 2026-03-14 05:47:53,482 | INFO     | overall cleanup function is called
[2026-03-14 06:48:41] 2026-03-14 05:47:54,493 | INFO     | --- collectZombieJob: --- 10, [22409]
[2026-03-14 06:48:41] 2026-03-14 05:47:54,493 | INFO     | zombie collector waiting for pid 22409
[2026-03-14 06:48:41] 2026-03-14 05:47:54,493 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 06:48:41] 2026-03-14 05:47:54,493 | INFO     | collected zombie processes
[2026-03-14 06:48:41] 2026-03-14 05:47:54,493 | INFO     | will attempt to kill all subprocesses of pid=22409
[2026-03-14 06:48:41] 2026-03-14 05:47:54,613 | INFO     | process IDs to be killed: [22409] (in reverse order)
[2026-03-14 06:48:41] 2026-03-14 05:47:55,243 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 06:48:41] 2026-03-14 05:47:55,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 06:48:41] 2026-03-14 05:47:55,249 | INFO     | did not find any defunct processes belonging to 22409
[2026-03-14 06:48:41] 2026-03-14 05:47:55,252 | INFO     | did not find any defunct processes belonging to 22409
[2026-03-14 06:48:41] 2026-03-14 05:47:55,252 | INFO     | ready for new job
[2026-03-14 06:48:41] 2026-03-14 05:47:55,252 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 06:48:41] 2026-03-14 05:47:55,256 | INFO     | **************************************
[2026-03-14 06:48:41] 2026-03-14 05:47:55,257 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-03-14 06:48:41] 2026-03-14 05:47:55,257 | INFO     | **************************************
[2026-03-14 06:48:41] 2026-03-14 05:47:55,257 | INFO     | 
[2026-03-14 06:48:41] 2026-03-14 05:47:55,257 | INFO     | pilot is running in a VM
[2026-03-14 06:48:41] 2026-03-14 05:47:55,258 | INFO     | architecture information:
[2026-03-14 06:48:41] 2026-03-14 05:47:55,265 | INFO     | executing command: cat /etc/os-release
[2026-03-14 06:48:41] 2026-03-14 05:47:55,493 | INFO     | cat /etc/os-release:
[2026-03-14 06:48:41] NAME="CentOS Linux"
[2026-03-14 06:48:41] VERSION="7 (Core)"
[2026-03-14 06:48:41] ID="centos"
[2026-03-14 06:48:41] ID_LIKE="rhel fedora"
[2026-03-14 06:48:41] VERSION_ID="7"
[2026-03-14 06:48:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 06:48:41] ANSI_COLOR="0;31"
[2026-03-14 06:48:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 06:48:41] HOME_URL="https://www.centos.org/"
[2026-03-14 06:48:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 06:48:41] 
[2026-03-14 06:48:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 06:48:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 06:48:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 06:48:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 06:48:41] 
[2026-03-14 06:48:41] 2026-03-14 05:47:55,493 | INFO     | **************************************
[2026-03-14 06:48:41] 2026-03-14 05:47:55,997 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-03-14 06:48:41] 2026-03-14 05:47:56,202 | INFO     | sufficient remaining disk space (494580793344 B)
[2026-03-14 06:48:41] 2026-03-14 05:47:56,202 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 06:48:41] 2026-03-14 05:47:56,202 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 06:48:41] 2026-03-14 05:47:56,202 | INFO     | update_server=False
[2026-03-14 06:48:41] 2026-03-14 05:47:56,202 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 06:48:41] 2026-03-14 05:47:56,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 06:48:41] 2026-03-14 05:47:56,207 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:48:41] 2026-03-14 05:47:56,207 | INFO     | aborting loop
[2026-03-14 06:48:41] 2026-03-14 05:47:56,665 | INFO     | all job control threads have been joined
[2026-03-14 06:48:41] 2026-03-14 05:47:57,102 | INFO     | all data control threads have been joined
[2026-03-14 06:48:41] 2026-03-14 05:47:57,209 | INFO     | [job] retrieve thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,213 | INFO     | [job] job monitor thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,267 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,380 | INFO     | all payload control threads have been joined
[2026-03-14 06:48:41] 2026-03-14 05:47:57,609 | INFO     | [payload] validate_post thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,617 | INFO     | [data] copytool_in thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,662 | INFO     | [job] validate thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,671 | INFO     | [job] control thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:57,789 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,003 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:48:41] 2026-03-14 05:47:58,108 | INFO     | [data] control thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,133 | INFO     | [payload] failed_post thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,181 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,210 | INFO     | [data] copytool_out thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,386 | INFO     | [payload] control thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,436 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:47:58,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 06:48:41] 2026-03-14 05:47:59,009 | INFO     | [job] queue monitor thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:48:02,860 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 06:48:41] 2026-03-14 05:48:25,371 | INFO     | PID=17882 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 06:48:41] 2026-03-14 05:48:25,371 | INFO     | .. there are 9 such processes running
[2026-03-14 06:48:41] 2026-03-14 05:48:25,372 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 06:48:41] 2026-03-14 05:48:25,372 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 06:48:41] 2026-03-14 05:48:25,373 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 06:48:41] 2026-03-14 05:48:32,246 | INFO     | [monitor] cgroup control has ended
[2026-03-14 06:48:41] 2026-03-14 05:48:33,112 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139642271049536)>', '<ExcThread(monitor, started 139641961293568)>']
[2026-03-14 06:48:41] 2026-03-14 05:48:33,422 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 06:48:41] 2026-03-14 05:48:33,422 | INFO     | [monitor] control thread has ended
[2026-03-14 06:48:41] 2026-03-14 05:48:38,137 | INFO     | all workflow threads have been joined
[2026-03-14 06:48:41] 2026-03-14 05:48:38,137 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 06:48:41] 2026-03-14 05:48:38,137 | INFO     | traces error code: 0
[2026-03-14 06:48:41] 2026-03-14 05:48:38,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 06:48:41] 2026-03-14 05:48:38,445 [wrapper] ==== pilot stdout END ====
[2026-03-14 06:48:41] 2026-03-14 05:48:38,543 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 06:48:41] 2026-03-14 05:48:38,629 [wrapper] pilotpid: 17882
[2026-03-14 06:48:41] 2026-03-14 05:48:38,682 [wrapper] Pilot exit status: 0
[2026-03-14 06:48:41] 2026-03-14 05:48:39,045 [wrapper] pandaids: 7039300884
[2026-03-14 06:48:41] 2026-03-14 05:48:39,990 [wrapper] cleanup supervisor_pilot 28824 17883
[2026-03-14 06:48:41] 2026-03-14 05:48:40,027 [wrapper] Test setup, not cleaning
[2026-03-14 06:48:41] 2026-03-14 05:48:40,074 [wrapper] apfmon messages muted
[2026-03-14 06:48:41] 2026-03-14 05:48:40,115 [wrapper] ==== wrapper stdout END ====
[2026-03-14 06:48:41] 2026-03-14 05:48:40,175 [wrapper] ==== wrapper stderr END ====
[2026-03-14 06:48:41]  *** Error codes and diagnostics ***
[2026-03-14 06:48:41]     "exeErrorCode": 0,
[2026-03-14 06:48:41]     "exeErrorDiag": "",
[2026-03-14 06:48:41]     "pilotErrorCode": 0,
[2026-03-14 06:48:41]     "pilotErrorDiag": "",
[2026-03-14 06:48:41]  *** Listing of results directory ***
[2026-03-14 06:48:41] total 625448
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc    584627 Mar  7 23:32 pilot3.tar.gz
[2026-03-14 06:48:41] -rwx------. 1 boinc boinc     36322 Mar  7 23:35 runpilot2-wrapper.sh
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc      5111 Mar  7 23:36 queuedata.json
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc       100 Mar 14 02:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 06:48:41] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 02:38 run_atlas
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc       105 Mar 14 02:38 job.xml
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc      6391 Mar 14 02:38 init_data.xml
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc 444543236 Mar 14 02:38 EVNT.46701403._001261.pool.root.1
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:38 start_atlas.sh
[2026-03-14 06:48:41] drwxrwx--x. 2 boinc boinc        68 Mar 14 02:38 shared
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc    597958 Mar 14 02:38 input.tar.gz
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc         0 Mar 14 02:38 boinc_lockfile
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc      2562 Mar 14 02:38 pandaJob.out
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc       415 Mar 14 02:45 workernode_map.json
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc   1006713 Mar 14 02:45 agis_schedconf.cvmfs.json
[2026-03-14 06:48:41] drwx------. 5 boinc boinc      4096 Mar 14 02:45 pilot3
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc 186972071 Mar 14 06:46 HITS.48955010._013032.pool.root.1
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc       531 Mar 14 06:47 boinc_task_state.xml
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc      1017 Mar 14 06:47 memory_monitor_summary.json
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc   1511579 Mar 14 06:47 agis_ddmendpoints.agis.ALL.json
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc    477623 Mar 14 06:47 log.48955010._013032.job.log.tgz.1
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc      6321 Mar 14 06:47 heartbeat.json
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc      8192 Mar 14 06:48 boinc_mmap_file
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc        28 Mar 14 06:48 wrapper_checkpoint.txt
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc        95 Mar 14 06:48 pilot_heartbeat.json
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc      4880 Mar 14 06:48 pilotlog.txt
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc   2029302 Mar 14 06:48 log.48955010._013032.job.log.1
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc       357 Mar 14 06:48 output.list
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc       620 Mar 14 06:48 runtime_log
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc   2529280 Mar 14 06:48 result.tar.gz
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc      8816 Mar 14 06:48 runtime_log.err
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc       655 Mar 14 06:48 LbrMDm4PFJ9n9Rq4apOajLDm4fhM0noT9bVooX4SDmU2ULDmkayhRn.diag
[2026-03-14 06:48:41] -rw-r--r--. 1 boinc boinc     20662 Mar 14 06:48 stderr.txt
[2026-03-14 06:48:41] HITS file was successfully produced:
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc 186972071 Mar 14 06:46 shared/HITS.pool.root.1
[2026-03-14 06:48:41]  *** Contents of shared directory: ***
[2026-03-14 06:48:41] total 619792
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc 444543236 Mar 14 02:38 ATLAS.root_0
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc     15845 Mar 14 02:38 start_atlas.sh
[2026-03-14 06:48:41] -rw-r--r--. 2 boinc boinc    597958 Mar 14 02:38 input.tar.gz
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc 186972071 Mar 14 06:46 HITS.pool.root.1
[2026-03-14 06:48:41] -rw-------. 1 boinc boinc   2529280 Mar 14 06:48 result.tar.gz
06:48:43 (13743): run_atlas exited; CPU time 54896.484911
06:48:43 (13743): called boinc_finish(0)

</stderr_txt>
]]>

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