Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:04:12 (6574): wrapper (7.7.26015): starting
00:04:12 (6574): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 00:04:12] Arguments: --nthreads 8
[2026-03-14 00:04:12] Threads: 8
[2026-03-14 00:04:12] Checking for CVMFS
[2026-03-14 00:04:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 00:04:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 00:04:15] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 00:04:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 00:04:16] 2.11.2.0 27636 126753 139092 157256 0 54 22612719 25165824 4784 130560 162 39882959 99.808 29779651 993 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 00:04:16] CVMFS is ok
[2026-03-14 00:04:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 00:04:16] Checking for apptainer binary...
[2026-03-14 00:04:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 00:04:16] Running /usr/bin/apptainer --version
[2026-03-14 00:04:17] apptainer version 1.3.2-1.el7
[2026-03-14 00:04:17] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 00:04:26] cg-vwn429.simple-grid.lan
[2026-03-14 00:04:26] apptainer works
[2026-03-14 00:04:26] Set ATHENA_PROC_NUMBER=8
[2026-03-14 00:04:26] Set ATHENA_CORE_NUMBER=8
[2026-03-14 00:04:26] Starting ATLAS job with PandaID=7053291966
[2026-03-14 00:04:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 05:04:04]  *** The last 200 lines of the pilot log: ***
[2026-03-14 05:04:04] 2026-03-14 04:03:14,901 | INFO     | total number of processed events: 400 (read)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,903 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7053291966/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,904 | INFO     | extracted standard info from prmon json
[2026-03-14 05:04:04] 2026-03-14 04:03:14,904 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 05:04:04] 2026-03-14 04:03:14,904 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 05:04:04] 2026-03-14 04:03:14,904 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 05:04:04] 2026-03-14 04:03:14,905 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 05:04:04] 2026-03-14 04:03:14,910 | INFO     | fitting pss+swap vs Time
[2026-03-14 05:04:04] 2026-03-14 04:03:14,911 | INFO     | sum of square deviations: 7178069470.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,914 | INFO     | sum of deviations: 40054675891.000015
[2026-03-14 05:04:04] 2026-03-14 04:03:14,914 | INFO     | mean x: 1773452305.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,914 | INFO     | mean y: 2483868.7929824563
[2026-03-14 05:04:04] 2026-03-14 04:03:14,914 | INFO     | intersect: -9893638978.973482
[2026-03-14 05:04:04] 2026-03-14 04:03:14,915 | INFO     | chi2: 6.634292870638932
[2026-03-14 05:04:04] 2026-03-14 04:03:14,916 | INFO     | sum of square deviations: 6806862510.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,922 | INFO     | sum of deviations: 58472356480.99997
[2026-03-14 05:04:04] 2026-03-14 04:03:14,923 | INFO     | mean x: 1773452152.5
[2026-03-14 05:04:04] 2026-03-14 04:03:14,923 | INFO     | mean y: 2491325.3571428573
[2026-03-14 05:04:04] 2026-03-14 04:03:14,923 | INFO     | intersect: -15231829378.29061
[2026-03-14 05:04:04] 2026-03-14 04:03:14,924 | INFO     | chi2: 5.916616786819039
[2026-03-14 05:04:04] 2026-03-14 04:03:14,924 | INFO     | current chi2=5.916616786819039 (change=10.817672626363503 %)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,924 | INFO     | right removable region: 279
[2026-03-14 05:04:04] 2026-03-14 04:03:14,924 | INFO     | sum of square deviations: 6806862510.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,927 | INFO     | sum of deviations: -57955212572.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,927 | INFO     | mean x: 1773452457.5
[2026-03-14 05:04:04] 2026-03-14 04:03:14,927 | INFO     | mean y: 2524097.5285714287
[2026-03-14 05:04:04] 2026-03-14 04:03:14,928 | INFO     | intersect: 15102111317.0078
[2026-03-14 05:04:04] 2026-03-14 04:03:14,928 | INFO     | chi2: 2.0795911262025744
[2026-03-14 05:04:04] 2026-03-14 04:03:14,928 | INFO     | current chi2=2.0795911262025744 (change=68.65391433944498 %)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,929 | INFO     | sum of square deviations: 6448679050.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,931 | INFO     | sum of deviations: -98712122902.99995
[2026-03-14 05:04:04] 2026-03-14 04:03:14,931 | INFO     | mean x: 1773452610.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,931 | INFO     | mean y: 2541356.0872727274
[2026-03-14 05:04:04] 2026-03-14 04:03:14,932 | INFO     | intersect: 27149383468.033604
[2026-03-14 05:04:04] 2026-03-14 04:03:14,932 | INFO     | chi2: 1.0479199875924228
[2026-03-14 05:04:04] 2026-03-14 04:03:14,932 | INFO     | current chi2=1.0479199875924228 (change=49.60932587234246 %)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,933 | INFO     | sum of square deviations: 6103286527.5
[2026-03-14 05:04:04] 2026-03-14 04:03:14,935 | INFO     | sum of deviations: -96980236004.50002
[2026-03-14 05:04:04] 2026-03-14 04:03:14,935 | INFO     | mean x: 1773452762.5
[2026-03-14 05:04:04] 2026-03-14 04:03:14,935 | INFO     | mean y: 2540567.974074074
[2026-03-14 05:04:04] 2026-03-14 04:03:14,936 | INFO     | intersect: 28182418192.12557
[2026-03-14 05:04:04] 2026-03-14 04:03:14,936 | INFO     | chi2: 1.0307466642634031
[2026-03-14 05:04:04] 2026-03-14 04:03:14,936 | INFO     | current chi2=1.0307466642634031 (change=1.6388010088895302 %)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,936 | INFO     | left removable region: 30
[2026-03-14 05:04:04] 2026-03-14 04:03:14,937 | INFO     | sum of square deviations: 4787066500.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,939 | INFO     | sum of deviations: -53570580213.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,939 | INFO     | mean x: 1773453037.0
[2026-03-14 05:04:04] 2026-03-14 04:03:14,939 | INFO     | mean y: 2538048.3815261046
[2026-03-14 05:04:04] 2026-03-14 04:03:14,940 | INFO     | intersect: 19848702327.193398
[2026-03-14 05:04:04] 2026-03-14 04:03:14,940 | INFO     | chi2: 0.2245243278118612
[2026-03-14 05:04:04] 2026-03-14 04:03:14,940 | INFO     | current memory leak: -11.19 B/s (using 249 data points, chi2=0.22)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,941 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-14 05:04:04] 2026-03-14 04:03:14,941 | INFO     | ..............................
[2026-03-14 05:04:04] 2026-03-14 04:03:14,941 | INFO     | . Timing measurements:
[2026-03-14 05:04:04] 2026-03-14 04:03:14,941 | INFO     | . get job = 0 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . initial setup = 102 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . payload setup = 140 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . stage-in = 0 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . payload execution = 17469 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . stage-out = 2 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | . log creation = 0 s
[2026-03-14 05:04:04] 2026-03-14 04:03:14,942 | INFO     | ..............................
[2026-03-14 05:04:04] 2026-03-14 04:03:15,244 | INFO     | 
[2026-03-14 05:04:04] 2026-03-14 04:03:15,244 | INFO     | job summary report
[2026-03-14 05:04:04] 2026-03-14 04:03:15,244 | INFO     | --------------------------------------------------
[2026-03-14 05:04:04] 2026-03-14 04:03:15,244 | INFO     | PanDA job id: 7053291966
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | task id: 48967085
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | errors: (none)
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | pilot state: finished 
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | transexitcode: 0
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | exeerrorcode: 0
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | exeerrordiag: 
[2026-03-14 05:04:04] 2026-03-14 04:03:15,245 | INFO     | exitcode: 0
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | exitmsg: OK
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | cpuconsumptiontime: 67991 s
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | nevents: 400
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | neventsw: 0
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | pid: 15351
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | pgrp: 15351
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | corecount: 8
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | event service: False
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | sizes: {0: 2279152, 1: 2279838, 2: 2280299, 13: 2280299, 17612: 2312502, 17613: 2312501, 17616: 2321685, 17618: 2321741, 17619: 2321935}
[2026-03-14 05:04:04] 2026-03-14 04:03:15,246 | INFO     | --------------------------------------------------
[2026-03-14 05:04:04] 2026-03-14 04:03:15,247 | INFO     | 
[2026-03-14 05:04:04] 2026-03-14 04:03:15,247 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-03-14 05:04:04] 2026-03-14 04:03:15,725 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,726 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,727 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 05:04:04] 2026-03-14 04:03:15,728 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,728 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 05:04:04] 2026-03-14 04:03:15,728 | INFO     | job 7053291966 has completed (purged errors)
[2026-03-14 05:04:04] 2026-03-14 04:03:15,728 | INFO     | overall cleanup function is called
[2026-03-14 05:04:04] 2026-03-14 04:03:16,736 | INFO     | --- collectZombieJob: --- 10, [15351]
[2026-03-14 05:04:04] 2026-03-14 04:03:16,736 | INFO     | zombie collector waiting for pid 15351
[2026-03-14 05:04:04] 2026-03-14 04:03:16,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 05:04:04] 2026-03-14 04:03:16,736 | INFO     | collected zombie processes
[2026-03-14 05:04:04] 2026-03-14 04:03:16,737 | INFO     | will attempt to kill all subprocesses of pid=15351
[2026-03-14 05:04:04] 2026-03-14 04:03:16,876 | INFO     | process IDs to be killed: [15351] (in reverse order)
[2026-03-14 05:04:04] 2026-03-14 04:03:17,575 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 05:04:04] 2026-03-14 04:03:17,575 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 05:04:04] 2026-03-14 04:03:17,578 | INFO     | did not find any defunct processes belonging to 15351
[2026-03-14 05:04:04] 2026-03-14 04:03:17,580 | INFO     | did not find any defunct processes belonging to 15351
[2026-03-14 05:04:04] 2026-03-14 04:03:17,580 | INFO     | ready for new job
[2026-03-14 05:04:04] 2026-03-14 04:03:17,581 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 05:04:04] 2026-03-14 04:03:17,583 | INFO     | **************************************
[2026-03-14 05:04:04] 2026-03-14 04:03:17,583 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 05:04:04] 2026-03-14 04:03:17,583 | INFO     | **************************************
[2026-03-14 05:04:04] 2026-03-14 04:03:17,583 | INFO     | 
[2026-03-14 05:04:04] 2026-03-14 04:03:17,584 | INFO     | pilot is running in a VM
[2026-03-14 05:04:04] 2026-03-14 04:03:17,584 | INFO     | architecture information:
[2026-03-14 05:04:04] 2026-03-14 04:03:17,590 | INFO     | executing command: cat /etc/os-release
[2026-03-14 05:04:04] 2026-03-14 04:03:17,856 | INFO     | cat /etc/os-release:
[2026-03-14 05:04:04] NAME="CentOS Linux"
[2026-03-14 05:04:04] VERSION="7 (Core)"
[2026-03-14 05:04:04] ID="centos"
[2026-03-14 05:04:04] ID_LIKE="rhel fedora"
[2026-03-14 05:04:04] VERSION_ID="7"
[2026-03-14 05:04:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 05:04:04] ANSI_COLOR="0;31"
[2026-03-14 05:04:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 05:04:04] HOME_URL="https://www.centos.org/"
[2026-03-14 05:04:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 05:04:04] 
[2026-03-14 05:04:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 05:04:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 05:04:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 05:04:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 05:04:04] 
[2026-03-14 05:04:04] 2026-03-14 04:03:17,857 | INFO     | **************************************
[2026-03-14 05:04:04] 2026-03-14 04:03:18,360 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-03-14 05:04:04] 2026-03-14 04:03:18,567 | INFO     | sufficient remaining disk space (495322136576 B)
[2026-03-14 05:04:04] 2026-03-14 04:03:18,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 05:04:04] 2026-03-14 04:03:18,568 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 05:04:04] 2026-03-14 04:03:18,568 | INFO     | update_server=False
[2026-03-14 05:04:04] 2026-03-14 04:03:18,568 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 05:04:04] 2026-03-14 04:03:18,569 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 05:04:04] 2026-03-14 04:03:18,595 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-14 05:04:04] 2026-03-14 04:03:18,595 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-14 05:04:04] 2026-03-14 04:03:18,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 05:04:04] 2026-03-14 04:03:18,596 | INFO     | will abort loop
[2026-03-14 05:04:04] 2026-03-14 04:03:18,829 | INFO     | all payload control threads have been joined
[2026-03-14 05:04:04] 2026-03-14 04:03:19,243 | INFO     | all data control threads have been joined
[2026-03-14 05:04:04] 2026-03-14 04:03:19,542 | INFO     | all job control threads have been joined
[2026-03-14 05:04:04] 2026-03-14 04:03:19,574 | INFO     | [job] retrieve thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:19,601 | INFO     | [job] job monitor thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:19,606 | INFO     | [payload] validate_post thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:19,835 | INFO     | [payload] control thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:19,971 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,085 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 05:04:04] 2026-03-14 04:03:20,249 | INFO     | [data] control thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,271 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 05:04:04] 2026-03-14 04:03:20,399 | INFO     | [job] validate thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,400 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,548 | INFO     | [job] control thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,576 | INFO     | [data] copytool_out thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,624 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,668 | INFO     | [data] copytool_in thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:20,933 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:21,091 | INFO     | [job] queue monitor thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:21,140 | INFO     | [payload] failed_post thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:24,280 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 05:04:04] 2026-03-14 04:03:46,978 | INFO     | PID=10711 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 05:04:04] 2026-03-14 04:03:46,978 | INFO     | .. there are 9 such processes running
[2026-03-14 05:04:04] 2026-03-14 04:03:46,979 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 05:04:04] 2026-03-14 04:03:46,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 05:04:04] 2026-03-14 04:03:46,980 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 05:04:04] 2026-03-14 04:03:53,143 | INFO     | [monitor] cgroup control has ended
[2026-03-14 05:04:04] 2026-03-14 04:03:54,728 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666694006592)>', '<ExcThread(monitor, started 139665935943424)>']
[2026-03-14 05:04:04] 2026-03-14 04:03:55,027 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 05:04:04] 2026-03-14 04:03:55,027 | INFO     | [monitor] control thread has ended
[2026-03-14 05:04:04] 2026-03-14 04:03:59,754 | INFO     | all workflow threads have been joined
[2026-03-14 05:04:04] 2026-03-14 04:03:59,754 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 05:04:04] 2026-03-14 04:03:59,755 | INFO     | traces error code: 0
[2026-03-14 05:04:04] 2026-03-14 04:03:59,755 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 05:04:04] 2026-03-14 04:04:00,105 [wrapper] ==== pilot stdout END ====
[2026-03-14 05:04:04] 2026-03-14 04:04:00,161 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 05:04:04] 2026-03-14 04:04:00,221 [wrapper] pilotpid: 10711
[2026-03-14 05:04:04] 2026-03-14 04:04:00,280 [wrapper] Pilot exit status: 0
[2026-03-14 05:04:04] 2026-03-14 04:04:00,725 [wrapper] pandaids: 7053291966
[2026-03-14 05:04:04] 2026-03-14 04:04:01,581 [wrapper] cleanup supervisor_pilot 24230 10712
[2026-03-14 05:04:04] 2026-03-14 04:04:01,682 [wrapper] Test setup, not cleaning
[2026-03-14 05:04:04] 2026-03-14 04:04:01,768 [wrapper] apfmon messages muted
[2026-03-14 05:04:04] 2026-03-14 04:04:01,858 [wrapper] ==== wrapper stdout END ====
[2026-03-14 05:04:04] 2026-03-14 04:04:01,927 [wrapper] ==== wrapper stderr END ====
[2026-03-14 05:04:04]  *** Error codes and diagnostics ***
[2026-03-14 05:04:04]     "exeErrorCode": 0,
[2026-03-14 05:04:04]     "exeErrorDiag": "",
[2026-03-14 05:04:04]     "pilotErrorCode": 0,
[2026-03-14 05:04:04]     "pilotErrorDiag": "",
[2026-03-14 05:04:04]  *** Listing of results directory ***
[2026-03-14 05:04:04] total 415104
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc    585013 Mar 13 11:33 pilot3.tar.gz
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc      5111 Mar 13 11:35 queuedata.json
[2026-03-14 05:04:04] -rwx------. 1 boinc boinc     36322 Mar 13 11:36 runpilot2-wrapper.sh
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc       100 Mar 14 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 05:04:04] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 00:04 run_atlas
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc       105 Mar 14 00:04 job.xml
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc 213415447 Mar 14 00:04 EVNT.48967083._000811.pool.root.1
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc      6393 Mar 14 00:04 init_data.xml
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc     15845 Mar 14 00:04 start_atlas.sh
[2026-03-14 05:04:04] drwxrwx--x. 2 boinc boinc        68 Mar 14 00:04 shared
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc    597527 Mar 14 00:04 input.tar.gz
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc         0 Mar 14 00:04 boinc_lockfile
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc      2563 Mar 14 00:04 pandaJob.out
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc       415 Mar 14 00:09 workernode_map.json
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc   1006717 Mar 14 00:09 agis_schedconf.cvmfs.json
[2026-03-14 05:04:04] drwx------. 5 boinc boinc      4096 Mar 14 00:09 pilot3
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc 201802268 Mar 14 05:01 HITS.48967085._019797.pool.root.1
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc       530 Mar 14 05:02 boinc_task_state.xml
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc      1011 Mar 14 05:03 memory_monitor_summary.json
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc   1511579 Mar 14 05:03 agis_ddmendpoints.agis.ALL.json
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc    506689 Mar 14 05:03 log.48967085._019797.job.log.tgz.1
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc      6323 Mar 14 05:03 heartbeat.json
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc        95 Mar 14 05:03 pilot_heartbeat.json
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc      8192 Mar 14 05:03 boinc_mmap_file
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc      5067 Mar 14 05:03 pilotlog.txt
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc        28 Mar 14 05:03 wrapper_checkpoint.txt
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc   2451797 Mar 14 05:04 log.48967085._019797.job.log.1
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc       357 Mar 14 05:04 output.list
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc       620 Mar 14 05:04 runtime_log
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc   2979840 Mar 14 05:04 result.tar.gz
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc       656 Mar 14 05:04 z3pNDmn3EL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmXgmLDmQSECpm.diag
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc      8832 Mar 14 05:04 runtime_log.err
[2026-03-14 05:04:04] -rw-r--r--. 1 boinc boinc     20745 Mar 14 05:04 stderr.txt
[2026-03-14 05:04:04] HITS file was successfully produced:
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc 201802268 Mar 14 05:01 shared/HITS.pool.root.1
[2026-03-14 05:04:04]  *** Contents of shared directory: ***
[2026-03-14 05:04:04] total 409004
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc 213415447 Mar 14 00:04 ATLAS.root_0
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc     15845 Mar 14 00:04 start_atlas.sh
[2026-03-14 05:04:04] -rw-r--r--. 2 boinc boinc    597527 Mar 14 00:04 input.tar.gz
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc 201802268 Mar 14 05:01 HITS.pool.root.1
[2026-03-14 05:04:04] -rw-------. 1 boinc boinc   2979840 Mar 14 05:04 result.tar.gz
05:04:05 (6574): run_atlas exited; CPU time 68260.139362
05:04:05 (6574): called boinc_finish(0)

</stderr_txt>
]]>

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