Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:19 (2419432): wrapper (7.7.26015): starting
00:39:19 (2419432): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 00:39:19] Arguments: --nthreads 3
[2026-03-14 00:39:19] Threads: 3
[2026-03-14 00:39:19] Checking for CVMFS
[2026-03-14 00:39:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 00:39:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 00:39:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 00:39:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 00:39:19] 2.9.2.0 12764 16638 92232 157258 1 50 29910944 36864001 0 130560 0 6747065 99.983 623830 12863 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 00:39:19] CVMFS is ok
[2026-03-14 00:39:19] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 00:39:19] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 00:39:19] Further information can be found at the LHC@home message board.
[2026-03-14 00:39:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 00:39:19] Checking for apptainer binary...
[2026-03-14 00:39:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 00:39:19] Running /usr/bin/apptainer --version
[2026-03-14 00:39:19] apptainer version 1.4.1-1.1
[2026-03-14 00:39:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 00:39:20] thA327
[2026-03-14 00:39:20] apptainer works
[2026-03-14 00:39:20] Set ATHENA_PROC_NUMBER=3
[2026-03-14 00:39:20] Set ATHENA_CORE_NUMBER=3
[2026-03-14 00:39:20] Starting ATLAS job with PandaID=7043880603
[2026-03-14 00:39:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 01:56:50]  *** The last 200 lines of the pilot log: ***
[2026-03-14 01:56:50] 2026-03-14 00:56:19,817 | INFO     | --- collectZombieJob: --- 10, [2427918]
[2026-03-14 01:56:50] 2026-03-14 00:56:19,817 | INFO     | zombie collector waiting for pid 2427918
[2026-03-14 01:56:50] 2026-03-14 00:56:19,817 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 01:56:50] 2026-03-14 00:56:19,817 | INFO     | collected zombie processes
[2026-03-14 01:56:50] 2026-03-14 00:56:19,817 | INFO     | will attempt to kill all subprocesses of pid=2427918
[2026-03-14 01:56:50] 2026-03-14 00:56:19,857 | INFO     | process IDs to be killed: [2427918] (in reverse order)
[2026-03-14 01:56:50] 2026-03-14 00:56:19,883 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 01:56:50] 2026-03-14 00:56:19,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 01:56:50] 2026-03-14 00:56:19,885 | INFO     | did not find any defunct processes belonging to 2427918
[2026-03-14 01:56:50] 2026-03-14 00:56:19,886 | INFO     | did not find any defunct processes belonging to 2427918
[2026-03-14 01:56:50] 2026-03-14 00:56:19,886 | INFO     | ready for new job
[2026-03-14 01:56:50] 2026-03-14 00:56:19,886 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | **************************************
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | **************************************
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | 
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | architecture information:
[2026-03-14 01:56:50] 2026-03-14 00:56:19,887 | INFO     | executing command: cat /etc/os-release
[2026-03-14 01:56:50] 2026-03-14 00:56:19,896 | INFO     | cat /etc/os-release:
[2026-03-14 01:56:50] NAME="CentOS Linux"
[2026-03-14 01:56:50] VERSION="7 (Core)"
[2026-03-14 01:56:50] ID="centos"
[2026-03-14 01:56:50] ID_LIKE="rhel fedora"
[2026-03-14 01:56:50] VERSION_ID="7"
[2026-03-14 01:56:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 01:56:50] ANSI_COLOR="0;31"
[2026-03-14 01:56:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 01:56:50] HOME_URL="https://www.centos.org/"
[2026-03-14 01:56:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 01:56:50] 
[2026-03-14 01:56:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 01:56:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 01:56:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 01:56:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 01:56:50] 
[2026-03-14 01:56:50] 2026-03-14 00:56:19,897 | INFO     | **************************************
[2026-03-14 01:56:50] 2026-03-14 00:56:20,400 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 01:56:50] 2026-03-14 00:56:20,413 | INFO     | sufficient remaining disk space (372992114688 B)
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | INFO     | update_server=False
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 01:56:50] 2026-03-14 00:56:20,414 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 01:56:50] 2026-03-14 00:56:20,667 | INFO     | all payload control threads have been joined
[2026-03-14 01:56:50] 2026-03-14 00:56:20,974 | INFO     | all data control threads have been joined
[2026-03-14 01:56:50] 2026-03-14 00:56:21,020 | INFO     | job.realtimelogging is not enabled
[2026-03-14 01:56:50] 2026-03-14 00:56:21,333 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 01:56:50] 2026-03-14 00:56:21,334 | INFO     | aborting loop
[2026-03-14 01:56:50] 2026-03-14 00:56:21,420 | INFO     | [job] queue monitor thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,420 | INFO     | [job] retrieve thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,447 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,610 | INFO     | [data] copytool_in thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,669 | INFO     | [payload] control thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,905 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,979 | INFO     | [data] control thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:21,981 | INFO     | all job control threads have been joined
[2026-03-14 01:56:50] 2026-03-14 00:56:22,026 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,233 | INFO     | [payload] validate_post thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,339 | INFO     | [job] job monitor thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,417 | INFO     | [data] copytool_out thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,828 | INFO     | [job] validate thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,917 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,943 | INFO     | [payload] failed_post thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:22,987 | INFO     | [job] control thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:24,421 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 01:56:50] 2026-03-14 00:56:35,217 | INFO     | [monitor] cgroup control has ended
[2026-03-14 01:56:50] 2026-03-14 00:56:36,220 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140137833359168)>', '<ExcThread(monitor, started 140137048561408)>']
[2026-03-14 01:56:50] 2026-03-14 00:56:41,246 | INFO     | all workflow threads have been joined
[2026-03-14 01:56:50] 2026-03-14 00:56:41,246 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 01:56:50] 2026-03-14 00:56:41,247 | INFO     | traces error code: 0
[2026-03-14 01:56:50] 2026-03-14 00:56:41,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 01:56:50] 2026-03-14 00:56:50,800 | INFO     | PID=2423481 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 01:56:50] 2026-03-14 00:56:50,800 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 01:56:50] 2026-03-14 00:56:50,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 01:56:50] 2026-03-14 00:56:50,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 01:56:50] 2026-03-14 00:56:50,801 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 01:56:50] 2026-03-14 00:56:50,801 | INFO     | [monitor] control thread has ended
[2026-03-14 01:56:50] 2026-03-14 00:56:50,846 [wrapper] ==== pilot stdout END ====
[2026-03-14 01:56:50] 2026-03-14 00:56:50,849 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 01:56:50] 2026-03-14 00:56:50,851 [wrapper] pilotpid: 2423481
[2026-03-14 01:56:50] 2026-03-14 00:56:50,854 [wrapper] Pilot exit status: 0
[2026-03-14 01:56:50] 2026-03-14 00:56:50,861 [wrapper] pandaids: 7043880603
[2026-03-14 01:56:50] 2026-03-14 00:56:50,878 [wrapper] cleanup supervisor_pilot 2433527 2423482
[2026-03-14 01:56:50] 2026-03-14 00:56:50,880 [wrapper] Test setup, not cleaning
[2026-03-14 01:56:50] 2026-03-14 00:56:50,883 [wrapper] apfmon messages muted
[2026-03-14 01:56:50] 2026-03-14 00:56:50,885 [wrapper] ==== wrapper stdout END ====
[2026-03-14 01:56:50] 2026-03-14 00:56:50,888 [wrapper] ==== wrapper stderr END ====
[2026-03-14 01:56:50]  *** Error codes and diagnostics ***
[2026-03-14 01:56:50]     "exeErrorCode": 0,
[2026-03-14 01:56:50]     "exeErrorDiag": "",
[2026-03-14 01:56:50]     "pilotErrorCode": 0,
[2026-03-14 01:56:50]     "pilotErrorDiag": "",
[2026-03-14 01:56:50]  *** Listing of results directory ***
[2026-03-14 01:56:50] total 614500
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc    585013 Mar 13 09:44 pilot3.tar.gz
[2026-03-14 01:56:50] -rwx------ 1 boinc boinc     36322 Mar 13 09:47 runpilot2-wrapper.sh
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc      5111 Mar 13 09:49 queuedata.json
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc       100 Mar 14 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 01:56:50] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 00:39 run_atlas
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc       105 Mar 14 00:39 job.xml
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc 439821744 Mar 14 00:39 EVNT.46701403._001580.pool.root.1
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc    597524 Mar 14 00:39 input.tar.gz
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc     15845 Mar 14 00:39 start_atlas.sh
[2026-03-14 01:56:50] drwxrwx--x 2 boinc boinc      4096 Mar 14 00:39 shared
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc         0 Mar 14 00:39 boinc_setup_complete
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc      6445 Mar 14 00:39 init_data.xml
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc         0 Mar 14 00:39 boinc_lockfile
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc      2564 Mar 14 00:39 pandaJob.out
[2026-03-14 01:56:50] -rw------- 1 boinc boinc   1006713 Mar 14 00:39 agis_schedconf.cvmfs.json
[2026-03-14 01:56:50] -rw------- 1 boinc boinc   1511579 Mar 14 00:39 agis_ddmendpoints.agis.ALL.json
[2026-03-14 01:56:50] -rw------- 1 boinc boinc       423 Mar 14 00:39 workernode_map.json
[2026-03-14 01:56:50] drwx------ 5 boinc boinc      4096 Mar 14 00:39 pilot3
[2026-03-14 01:56:50] -rw------- 1 boinc boinc 183588620 Mar 14 01:55 HITS.48955010._029329.pool.root.1
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc       530 Mar 14 01:56 boinc_task_state.xml
[2026-03-14 01:56:50] -rw------- 1 boinc boinc      1015 Mar 14 01:56 memory_monitor_summary.json
[2026-03-14 01:56:50] -rw------- 1 boinc boinc    279616 Mar 14 01:56 log.48955010._029329.job.log.tgz.1
[2026-03-14 01:56:50] -rw------- 1 boinc boinc      6316 Mar 14 01:56 heartbeat.json
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc        27 Mar 14 01:56 wrapper_checkpoint.txt
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc      8192 Mar 14 01:56 boinc_mmap_file
[2026-03-14 01:56:50] -rw------- 1 boinc boinc       747 Mar 14 01:56 pilotlog.txt
[2026-03-14 01:56:50] -rw------- 1 boinc boinc        95 Mar 14 01:56 pilot_heartbeat.json
[2026-03-14 01:56:50] -rw------- 1 boinc boinc    679921 Mar 14 01:56 log.48955010._029329.job.log.1
[2026-03-14 01:56:50] -rw------- 1 boinc boinc       357 Mar 14 01:56 output.list
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc       620 Mar 14 01:56 runtime_log
[2026-03-14 01:56:50] -rw------- 1 boinc boinc    972800 Mar 14 01:56 result.tar.gz
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc      8896 Mar 14 01:56 runtime_log.err
[2026-03-14 01:56:50] -rw------- 1 boinc boinc       657 Mar 14 01:56 eJhLDmEMDL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmr6oLDmFvGtWo.diag
[2026-03-14 01:56:50] -rw-r--r-- 1 boinc boinc     10704 Mar 14 01:56 stderr.txt
[2026-03-14 01:56:50] HITS file was successfully produced:
[2026-03-14 01:56:50] -rw------- 1 boinc boinc 183588620 Mar 14 01:55 shared/HITS.pool.root.1
[2026-03-14 01:56:50]  *** Contents of shared directory: ***
[2026-03-14 01:56:50] total 610364
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc 439821744 Mar 14 00:39 ATLAS.root_0
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc    597524 Mar 14 00:39 input.tar.gz
[2026-03-14 01:56:50] -rw-r--r-- 2 boinc boinc     15845 Mar 14 00:39 start_atlas.sh
[2026-03-14 01:56:50] -rw------- 1 boinc boinc 183588620 Mar 14 01:55 HITS.pool.root.1
[2026-03-14 01:56:50] -rw------- 1 boinc boinc    972800 Mar 14 01:56 result.tar.gz
01:56:52 (2419432): run_atlas exited; CPU time 13113.465224
01:56:52 (2419432): called boinc_finish(0)

</stderr_txt>
]]>

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