Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:55:00 (2302955): wrapper (7.7.26015): starting
04:55:00 (2302955): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 04:55:00] Arguments: --nthreads 4
[2026-03-14 04:55:00] Threads: 4
[2026-03-14 04:55:00] Checking for CVMFS
[2026-03-14 04:55:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 04:55:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 04:55:02] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 04:55:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 04:55:02] 2.9.2.0 7007 14037 103804 157263 3 50 30729821 36864000 0 130560 0 6357752 99.985 522497 11482 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 04:55:02] CVMFS is ok
[2026-03-14 04:55:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 04:55:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 04:55:02] Further information can be found at the LHC@home message board.
[2026-03-14 04:55:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 04:55:02] Checking for apptainer binary...
[2026-03-14 04:55:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 04:55:02] Running /usr/bin/apptainer --version
[2026-03-14 04:55:02] apptainer version 1.4.1-1.1
[2026-03-14 04:55:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 04:55:02] thA332a
[2026-03-14 04:55:02] apptainer works
[2026-03-14 04:55:02] Set ATHENA_PROC_NUMBER=4
[2026-03-14 04:55:02] Set ATHENA_CORE_NUMBER=4
[2026-03-14 04:55:02] Starting ATLAS job with PandaID=7044117405
[2026-03-14 04:55:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 06:02:30]  *** The last 200 lines of the pilot log: ***
[2026-03-14 06:02:30] 2026-03-14 05:01:58,122 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 06:02:30] 2026-03-14 05:01:58,122 | INFO     | job 7044117405 has completed (purged errors)
[2026-03-14 06:02:30] 2026-03-14 05:01:58,122 | INFO     | overall cleanup function is called
[2026-03-14 06:02:30] 2026-03-14 05:01:59,129 | INFO     | --- collectZombieJob: --- 10, [2311565]
[2026-03-14 06:02:30] 2026-03-14 05:01:59,129 | INFO     | zombie collector waiting for pid 2311565
[2026-03-14 06:02:30] 2026-03-14 05:01:59,129 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 06:02:30] 2026-03-14 05:01:59,129 | INFO     | collected zombie processes
[2026-03-14 06:02:30] 2026-03-14 05:01:59,130 | INFO     | will attempt to kill all subprocesses of pid=2311565
[2026-03-14 06:02:30] 2026-03-14 05:01:59,171 | INFO     | process IDs to be killed: [2311565] (in reverse order)
[2026-03-14 06:02:30] 2026-03-14 05:01:59,204 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 06:02:30] 2026-03-14 05:01:59,204 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 06:02:30] 2026-03-14 05:01:59,205 | INFO     | did not find any defunct processes belonging to 2311565
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | did not find any defunct processes belonging to 2311565
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | ready for new job
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | **************************************
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | **************************************
[2026-03-14 06:02:30] 2026-03-14 05:01:59,207 | INFO     | 
[2026-03-14 06:02:30] 2026-03-14 05:01:59,208 | INFO     | architecture information:
[2026-03-14 06:02:30] 2026-03-14 05:01:59,208 | INFO     | executing command: cat /etc/os-release
[2026-03-14 06:02:30] 2026-03-14 05:01:59,221 | INFO     | cat /etc/os-release:
[2026-03-14 06:02:30] NAME="CentOS Linux"
[2026-03-14 06:02:30] VERSION="7 (Core)"
[2026-03-14 06:02:30] ID="centos"
[2026-03-14 06:02:30] ID_LIKE="rhel fedora"
[2026-03-14 06:02:30] VERSION_ID="7"
[2026-03-14 06:02:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 06:02:30] ANSI_COLOR="0;31"
[2026-03-14 06:02:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 06:02:30] HOME_URL="https://www.centos.org/"
[2026-03-14 06:02:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 06:02:30] 
[2026-03-14 06:02:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 06:02:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 06:02:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 06:02:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 06:02:30] 
[2026-03-14 06:02:30] 2026-03-14 05:01:59,222 | INFO     | **************************************
[2026-03-14 06:02:30] 2026-03-14 05:01:59,449 | WARNING  | process 2311565 can no longer be monitored (due to stat problems) - aborting
[2026-03-14 06:02:30] 2026-03-14 05:01:59,479 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 06:02:30] 2026-03-14 05:01:59,516 | INFO     | number of running child processes to parent process 2311565: 1
[2026-03-14 06:02:30] 2026-03-14 05:01:59,517 | INFO     | maximum number of monitored processes: 6
[2026-03-14 06:02:30] 2026-03-14 05:01:59,517 | INFO     | aborting job monitoring since job object (job id=7044117405) has expired
[2026-03-14 06:02:30] 2026-03-14 05:01:59,725 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 06:02:30] 2026-03-14 05:01:59,743 | INFO     | sufficient remaining disk space (327076020224 B)
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | INFO     | update_server=False
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 06:02:30] 2026-03-14 05:01:59,744 | INFO     | will abort loop
[2026-03-14 06:02:30] 2026-03-14 05:01:59,795 | INFO     | all payload control threads have been joined
[2026-03-14 06:02:30] 2026-03-14 05:02:00,219 | INFO     | all data control threads have been joined
[2026-03-14 06:02:30] 2026-03-14 05:02:00,622 | INFO     | all job control threads have been joined
[2026-03-14 06:02:30] 2026-03-14 05:02:00,702 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 06:02:30] 2026-03-14 05:02:00,749 | INFO     | [job] retrieve thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:00,750 | INFO     | [job] queue monitor thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:00,750 | INFO     | [job] job monitor thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:00,801 | INFO     | [payload] control thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,166 | INFO     | [payload] validate_post thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,225 | INFO     | [data] control thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,234 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 06:02:30] 2026-03-14 05:02:01,272 | INFO     | [payload] failed_post thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,603 | INFO     | [job] validate thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,628 | INFO     | [job] control thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,720 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,790 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:01,920 | INFO     | [data] copytool_in thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:02,243 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:02,709 | INFO     | [data] copytool_out thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:05,241 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:10,478 | INFO     | job.realtimelogging is not enabled
[2026-03-14 06:02:30] 2026-03-14 05:02:11,484 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 06:02:30] 2026-03-14 05:02:18,590 | INFO     | [monitor] cgroup control has ended
[2026-03-14 06:02:30] 2026-03-14 05:02:19,928 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140295664437056)>', '<ExcThread(monitor, started 140295022827264)>']
[2026-03-14 06:02:30] 2026-03-14 05:02:24,954 | INFO     | all workflow threads have been joined
[2026-03-14 06:02:30] 2026-03-14 05:02:24,954 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 06:02:30] 2026-03-14 05:02:24,954 | INFO     | traces error code: 0
[2026-03-14 06:02:30] 2026-03-14 05:02:24,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | INFO     | PID=2307057 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 06:02:30] 2026-03-14 05:02:30,629 | INFO     | [monitor] control thread has ended
[2026-03-14 06:02:30] 2026-03-14 05:02:30,703 [wrapper] ==== pilot stdout END ====
[2026-03-14 06:02:30] 2026-03-14 05:02:30,707 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 06:02:30] 2026-03-14 05:02:30,711 [wrapper] pilotpid: 2307057
[2026-03-14 06:02:30] 2026-03-14 05:02:30,714 [wrapper] Pilot exit status: 0
[2026-03-14 06:02:30] 2026-03-14 05:02:30,726 [wrapper] pandaids: 7044117405
[2026-03-14 06:02:30] 2026-03-14 05:02:30,746 [wrapper] cleanup supervisor_pilot 2316707 2307058
[2026-03-14 06:02:30] 2026-03-14 05:02:30,751 [wrapper] Test setup, not cleaning
[2026-03-14 06:02:30] 2026-03-14 05:02:30,755 [wrapper] apfmon messages muted
[2026-03-14 06:02:30] 2026-03-14 05:02:30,758 [wrapper] ==== wrapper stdout END ====
[2026-03-14 06:02:30] 2026-03-14 05:02:30,762 [wrapper] ==== wrapper stderr END ====
[2026-03-14 06:02:30]  *** Error codes and diagnostics ***
[2026-03-14 06:02:30]     "exeErrorCode": 0,
[2026-03-14 06:02:30]     "exeErrorDiag": "",
[2026-03-14 06:02:30]     "pilotErrorCode": 0,
[2026-03-14 06:02:30]     "pilotErrorDiag": "",
[2026-03-14 06:02:30]  *** Listing of results directory ***
[2026-03-14 06:02:30] total 616464
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc    585013 Mar 13 13:53 pilot3.tar.gz
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc      5111 Mar 13 14:07 queuedata.json
[2026-03-14 06:02:30] -rwx------ 1 boinc boinc     36322 Mar 13 14:08 runpilot2-wrapper.sh
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc       100 Mar 14 04:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 06:02:30] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 04:55 run_atlas
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc       105 Mar 14 04:55 job.xml
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc 436315104 Mar 14 04:55 EVNT.46701403._001600.pool.root.1
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc    597532 Mar 14 04:55 input.tar.gz
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc     15845 Mar 14 04:55 start_atlas.sh
[2026-03-14 06:02:30] drwxrwx--x 2 boinc boinc      4096 Mar 14 04:55 shared
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc         0 Mar 14 04:55 boinc_setup_complete
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc      6370 Mar 14 04:55 init_data.xml
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc         0 Mar 14 04:55 boinc_lockfile
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc      2562 Mar 14 04:55 pandaJob.out
[2026-03-14 06:02:30] -rw------- 1 boinc boinc   1004579 Mar 14 04:55 agis_schedconf.cvmfs.json
[2026-03-14 06:02:30] -rw------- 1 boinc boinc   1511579 Mar 14 04:55 agis_ddmendpoints.agis.ALL.json
[2026-03-14 06:02:30] -rw------- 1 boinc boinc       428 Mar 14 04:55 workernode_map.json
[2026-03-14 06:02:30] drwx------ 5 boinc boinc      4096 Mar 14 04:55 pilot3
[2026-03-14 06:02:30] -rw------- 1 boinc boinc 189338632 Mar 14 06:01 HITS.48955010._030306.pool.root.1
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc       531 Mar 14 06:01 boinc_task_state.xml
[2026-03-14 06:02:30] -rw------- 1 boinc boinc      1031 Mar 14 06:01 memory_monitor_summary.json
[2026-03-14 06:02:30] -rw------- 1 boinc boinc    243312 Mar 14 06:01 log.48955010._030306.job.log.tgz.1
[2026-03-14 06:02:30] -rw------- 1 boinc boinc      6315 Mar 14 06:01 heartbeat.json
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc        27 Mar 14 06:02 wrapper_checkpoint.txt
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc      8192 Mar 14 06:02 boinc_mmap_file
[2026-03-14 06:02:30] -rw------- 1 boinc boinc       747 Mar 14 06:02 pilotlog.txt
[2026-03-14 06:02:30] -rw------- 1 boinc boinc        95 Mar 14 06:02 pilot_heartbeat.json
[2026-03-14 06:02:30] -rw------- 1 boinc boinc    597488 Mar 14 06:02 log.48955010._030306.job.log.1
[2026-03-14 06:02:30] -rw------- 1 boinc boinc       357 Mar 14 06:02 output.list
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc       620 Mar 14 06:02 runtime_log
[2026-03-14 06:02:30] -rw------- 1 boinc boinc    860160 Mar 14 06:02 result.tar.gz
[2026-03-14 06:02:30] -rw------- 1 boinc boinc       658 Mar 14 06:02 xTJODmjQHL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmNYpLDmzcwULm.diag
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc      8901 Mar 14 06:02 runtime_log.err
[2026-03-14 06:02:30] -rw-r--r-- 1 boinc boinc     11633 Mar 14 06:02 stderr.txt
[2026-03-14 06:02:30] HITS file was successfully produced:
[2026-03-14 06:02:30] -rw------- 1 boinc boinc 189338632 Mar 14 06:01 shared/HITS.pool.root.1
[2026-03-14 06:02:30]  *** Contents of shared directory: ***
[2026-03-14 06:02:30] total 612444
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc 436315104 Mar 14 04:55 ATLAS.root_0
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc    597532 Mar 14 04:55 input.tar.gz
[2026-03-14 06:02:30] -rw-r--r-- 2 boinc boinc     15845 Mar 14 04:55 start_atlas.sh
[2026-03-14 06:02:30] -rw------- 1 boinc boinc 189338632 Mar 14 06:01 HITS.pool.root.1
[2026-03-14 06:02:30] -rw------- 1 boinc boinc    860160 Mar 14 06:02 result.tar.gz
06:02:31 (2302955): run_atlas exited; CPU time 14980.993517
06:02:31 (2302955): called boinc_finish(0)

</stderr_txt>
]]>

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