Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-03-13 15:06:39 (22837): vboxwrapper version 26210
2026-03-13 15:06:39 (22837): BOINC client version: 8.2.8
2026-03-13 15:06:39 (22837): Detected: VirtualBox VboxManage Interface (Version: 7.2.6)
2026-03-13 15:06:39 (22837): Successfully copied 'init_data.xml' to the shared directory.
2026-03-13 15:06:39 (22837): Create VM. (boinc_e1e16b725be891da, slot#3)
2026-03-13 15:06:40 (22837): Setting Memory Size for VM. (4800MB)
2026-03-13 15:06:40 (22837): Setting CPU Count for VM. (8)
2026-03-13 15:06:40 (22837): Setting Chipset Options for VM.
2026-03-13 15:06:40 (22837): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-03-13 15:06:40 (22837): Setting Boot Options for VM.
2026-03-13 15:06:41 (22837): Setting Network Configuration for NAT. (Driver: virtio)
2026-03-13 15:06:41 (22837): Enabling VM Network Access.
2026-03-13 15:06:41 (22837): Disabling USB Support for VM.
2026-03-13 15:06:41 (22837): Disabling COM Port Support for VM.
2026-03-13 15:06:41 (22837): Disabling LPT Port Support for VM.
2026-03-13 15:06:42 (22837): Disabling Audio Support for VM.
2026-03-13 15:06:42 (22837): Disabling Clipboard Support for VM.
2026-03-13 15:06:42 (22837): Disabling Drag and Drop Support for VM.
2026-03-13 15:06:42 (22837): Adding storage controller(s) to VM.
2026-03-13 15:06:42 (22837): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-03-13 15:06:43 (22837): Adding VirtualBox Guest Additions to VM.
2026-03-13 15:06:43 (22837): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-03-13 15:06:43 (22837): forwarding host port 42695 to guest port 80
2026-03-13 15:06:43 (22837): Enabling remote desktop for VM.
2026-03-13 15:06:43 (22837): Required extension pack not installed, remote desktop not enabled.
2026-03-13 15:06:43 (22837): Enabling shared directory for VM.
2026-03-13 15:06:44 (22837): Starting VM using VBoxManage interface. (boinc_e1e16b725be891da, slot#3)
2026-03-13 15:06:45 (22837): Successfully started VM. (PID = '23321')
2026-03-13 15:06:45 (22837): Reporting VM Process ID to BOINC.
2026-03-13 15:06:45 (22837): Guest Log: BIOS: VirtualBox 7.2.6
2026-03-13 15:06:45 (22837): Guest Log: CPUID EDX: 0x178bfbff
2026-03-13 15:06:45 (22837): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-03-13 15:06:45 (22837): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-03-13 15:06:45 (22837): VM state change detected. (old = 'poweredoff', new = 'running')
2026-03-13 15:06:45 (22837): Detected: Web Application Enabled (http://localhost:42695)
2026-03-13 15:06:45 (22837): Preference change detected
2026-03-13 15:06:45 (22837): Setting CPU throttle for VM. (100%)
2026-03-13 15:06:45 (22837): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2026-03-13 15:06:47 (22837): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-03-13 15:06:47 (22837): Guest Log: BIOS: Booting from Hard Disk...
2026-03-13 15:06:50 (22837): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-03-13 15:06:50 (22837): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-03-13 15:06:50 (22837): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-03-13 15:06:59 (22837): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-03-13 15:06:59 (22837): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-03-13 15:07:10 (22837): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000364 main     Log opened 2026-03-13T15:07:08.749787000Z
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000567 main     OS Product: Linux
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000636 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000694 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000753 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000755 main     Process ID: 1385
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.000756 main     Package type: LINUX_64BITS_GENERIC
2026-03-13 15:07:10 (22837): Guest Log: 00:00:00.001978 main     5.2.32 r132073 started. Verbose level = 0
2026-03-13 15:07:11 (22837): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-03-13 15:07:11 (22837): Guest Log: [INFO] Mounting shared directory
2026-03-13 15:07:11 (22837): Guest Log: [INFO] Checking for init_data.xml
2026-03-13 15:07:16 (22837): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-03-13 15:07:16 (22837): Guest Log: [INFO] Detected branch: prod
2026-03-13 15:07:17 (22837): Guest Log: This is the prod version of the ATLAS job wrapper
2026-03-13 15:07:17 (22837): Guest Log: Copying input files
2026-03-13 15:07:21 (22837): Guest Log: Copied input files into RunAtlas.
2026-03-13 15:07:21 (22837): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-03-13 15:07:21 (22837): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-03-13 15:07:21 (22837): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-03-13 15:07:21 (22837): Guest Log: Further information can be found at the LHC@home message board.
2026-03-13 15:07:34 (22837): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-03-13 15:07:34 (22837): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-03-13 15:07:34 (22837): Guest Log: 2.6.3.0 1664 0 30144 157242 3 1 3117743 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-03-13 15:07:38 (22837): Guest Log: copied the webapp to /var/www
2026-03-13 15:07:38 (22837): Guest Log: ATHENA_PROC_NUMBER=8
2026-03-13 15:07:38 (22837): Guest Log: ATHENA_CORE_NUMBER=8
2026-03-13 15:07:38 (22837): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-03-13 15:07:38 (22837): Guest Log:  *** Starting ATLAS job. (PandaID=7038581147 taskID=48955006) ***
2026-03-13 15:26:26 (22837): Guest Log:  *** Job finished ***
2026-03-13 15:26:26 (22837): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:24:58,074 | INFO     | all workflow threads have been joined
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:24:58,075 | INFO     | end of generic workflow (traces error code: 0)
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:24:58,075 | INFO     | traces error code: 0
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:24:58,076 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,599 | INFO     | PID=6101 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,601 | INFO     | found 0 job(s) in 20 queues
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,601 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,601 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,602 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:06,602 | INFO     | [monitor] control thread has ended
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:07,135 [wrapper] ==== pilot stdout END ====
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:07,147 [wrapper] ==== wrapper stdout RESUME ====
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:07,158 [wrapper] pilotpid: 6101
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:07,169 [wrapper] Pilot exit status: 0
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,382 [wrapper] pandaids: 7038581147
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,451 [wrapper] cleanup supervisor_pilot 16652 6102
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,463 [wrapper] Test setup, not cleaning
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,475 [wrapper] apfmon messages muted
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,486 [wrapper] ==== wrapper stdout END ====
2026-03-13 15:26:26 (22837): Guest Log: 2026-03-13 15:25:08,498 [wrapper] ==== wrapper stderr END ====
2026-03-13 15:26:26 (22837): Guest Log:  *** Error codes and diagnostics ***
2026-03-13 15:26:26 (22837): Guest Log:     "exeErrorCode": 0,
2026-03-13 15:26:26 (22837): Guest Log:     "exeErrorDiag": "",
2026-03-13 15:26:26 (22837): Guest Log:     "pilotErrorCode": 1305,
2026-03-13 15:26:26 (22837): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2026-03-13 15:26:26 (22837): Guest Log:  *** Listing of results directory ***
2026-03-13 15:26:26 (22837): Guest Log: total 4592
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas  584627 Mar  5 08:55 pilot3.tar.gz
2026-03-13 15:26:26 (22837): Guest Log: -rwx------. 1 atlas atlas   36322 Mar  5 08:56 runpilot2-wrapper.sh
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas    5111 Mar  5 08:56 queuedata.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas   15845 Mar 13 15:07 start_atlas.sh
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas  597950 Mar 13 15:07 input.tar.gz
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas    9104 Mar 13 15:07 init_data.xml
2026-03-13 15:26:26 (22837): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Mar 13 15:07 EVNT.46701403._000105.pool.root.1 -> /data/./ATLAS.root_0
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas    2561 Mar 13 15:07 pandaJob.out
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas 1006539 Mar 13 15:08 agis_schedconf.cvmfs.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas 1511578 Mar 13 15:08 agis_ddmendpoints.agis.ALL.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas     433 Mar 13 15:08 workernode_map.json
2026-03-13 15:26:26 (22837): Guest Log: drwx------. 5 atlas atlas    4096 Mar 13 15:08 pilot3
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas    1037 Mar 13 15:22 memory_monitor_summary.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas  245608 Mar 13 15:22 log.48955006._005211.job.log.tgz.1
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas    7962 Mar 13 15:24 heartbeat.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas      95 Mar 13 15:25 pilot_heartbeat.json
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas     744 Mar 13 15:25 pilotlog.txt
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas  174948 Mar 13 15:25 log.48955006._005211.job.log.1
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas     188 Mar 13 15:25 output.list
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas     620 Mar 13 15:25 runtime_log
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas  440320 Mar 13 15:25 result.tar.gz
2026-03-13 15:26:26 (22837): Guest Log: -rw-r--r--. 1 atlas atlas    8596 Mar 13 15:25 runtime_log.err
2026-03-13 15:26:26 (22837): Guest Log: -rw-------. 1 atlas atlas     649 Mar 13 15:25 b8dNDmLgJI9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlLNLDm6EbeSn.diag
2026-03-13 15:26:26 (22837): Guest Log: Looking for outputfile HITS.48955006._005211.pool.root.1
2026-03-13 15:26:26 (22837): Guest Log: No HITS file was produced
2026-03-13 15:26:26 (22837): Guest Log: Successfully finished the ATLAS job!
2026-03-13 15:26:26 (22837): Guest Log: Copying the results back to the shared directory!
2026-03-13 15:26:27 (22837): Guest Log:  *** Contents of shared directory: ***
2026-03-13 15:26:27 (22837): Guest Log: total 438088
2026-03-13 15:26:27 (22837): Guest Log: -rw-r--r--. 1 root root 447532032 Mar 13 15:06 ATLAS.root_0
2026-03-13 15:26:27 (22837): Guest Log: -rw-r--r--. 1 root root      9104 Mar 13 15:06 init_data.xml
2026-03-13 15:26:27 (22837): Guest Log: -rw-r--r--. 1 root root    597950 Mar 13 15:06 input.tar.gz
2026-03-13 15:26:27 (22837): Guest Log: -rw-r--r--. 1 root root    440320 Mar 13  2026 result.tar.gz
2026-03-13 15:26:27 (22837): Guest Log: -rw-r--r--. 1 root root     15845 Mar 13 15:06 start_atlas.sh
2026-03-13 15:26:27 (22837): Guest Log:  *** Success! Shutting down the machine. ***
2026-03-13 15:26:27 (22837): VM Completion File Detected.
2026-03-13 15:26:27 (22837): Powering off VM.
2026-03-13 15:26:28 (22837): Successfully stopped VM.
2026-03-13 15:26:28 (22837): Deregistering VM. (boinc_e1e16b725be891da, slot#3)
2026-03-13 15:26:28 (22837): Removing network bandwidth throttle group from VM.
2026-03-13 15:26:28 (22837): Removing VM from VirtualBox.
2026-03-13 15:26:34 (22837): called boinc_finish(0)

</stderr_txt>
]]>

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