Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:08:35 (4027276): wrapper (7.7.26015): starting
04:08:35 (4027276): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 04:08:35] Arguments: --nthreads 4
[2026-03-15 04:08:35] Threads: 4
[2026-03-15 04:08:35] Checking for CVMFS
[2026-03-15 04:08:35] No cvmfs_config command found, will try listing directly
[2026-03-15 04:08:35] CVMFS is ok
[2026-03-15 04:08:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 04:08:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 04:08:35] Further information can be found at the LHC@home message board.
[2026-03-15 04:08:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 04:08:35] Checking for apptainer binary...
[2026-03-15 04:08:35] which: no apptainer in ((null))
[2026-03-15 04:08:35] apptainer is not installed, using version from CVMFS
[2026-03-15 04:08:35] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 04:08:35] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot124/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-15 04:08:35] apptainer works
[2026-03-15 04:08:35] Set ATHENA_PROC_NUMBER=4
[2026-03-15 04:08:35] Set ATHENA_CORE_NUMBER=4
[2026-03-15 04:08:35] Starting ATLAS job with PandaID=7053293997
[2026-03-15 04:08:35] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot124/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 05:50:18]  *** The last 200 lines of the pilot log: ***
[2026-03-15 05:50:18]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/ea/log.48967085._020492.job.log.tgz.1
[2026-03-15 05:50:18]  workdir=None
[2026-03-15 05:50:18] ]
[2026-03-15 05:50:18] 2026-03-15 04:49:43,508 | INFO     | transferring file log.48967085._020492.job.log.tgz.1 from /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/log.48967085._020492.job.log.tgz.1 to /var/lib/
[2026-03-15 05:50:18] 2026-03-15 04:49:43,508 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/log.48967085._020492.job.log.tgz.1 /var/lib/boinc/var/slot124/slots/0/
[2026-03-15 05:50:18] 2026-03-15 04:49:43,515 | WARNING  | process 4038663 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 05:50:18] 2026-03-15 04:49:43,515 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,516 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,516 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-03-15 05:50:18] 2026-03-15 04:49:43,516 | WARNING  | maxPSS not found in memory monitor output
[2026-03-15 05:50:18] 2026-03-15 04:49:43,517 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2237301 B
[2026-03-15 05:50:18] 2026-03-15 04:49:43,517 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15616 B
[2026-03-15 05:50:18] 2026-03-15 04:49:43,517 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-15 05:50:18] 2026-03-15 04:49:43,523 | INFO     | adding to output.list: log.48967085._020492.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/61/ea/log.48967085._020492.job.log.tg
[2026-03-15 05:50:18] 2026-03-15 04:49:43,523 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 05:50:18] 2026-03-15 04:49:43,524 | INFO     | summary of transferred files:
[2026-03-15 05:50:18] 2026-03-15 04:49:43,524 | INFO     |  -- lfn=log.48967085._020492.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 05:50:18] 2026-03-15 04:49:43,524 | INFO     | stage-out finished correctly
[2026-03-15 05:50:18] 2026-03-15 04:49:43,571 | INFO     | sufficient remaining disk space (45304774656 B)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,571 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,572 | INFO     | size of work directory /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997: 2545312 B (within 5033164800 B limit)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,572 | INFO     | pfn file=/var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/HITS.48967085._020492.pool.root.1 does not exist (skip from workdir size calculation)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,572 | INFO     | total size of present files: 0 B (workdir size: 2545312 B)
[2026-03-15 05:50:18] 2026-03-15 04:49:43,572 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/HITS.48967085._020492.pool.root.1 since it does not exist
[2026-03-15 05:50:18] 2026-03-15 04:49:44,019 | INFO     | number of running child processes to parent process 4038663: 1
[2026-03-15 05:50:18] 2026-03-15 04:49:44,019 | INFO     | maximum number of monitored processes: 6
[2026-03-15 05:50:18] 2026-03-15 04:49:44,154 | INFO     | time since job start (6057s) is within the limit (345600.0s)
[2026-03-15 05:50:18] 2026-03-15 04:49:44,492 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 05:50:18] 2026-03-15 04:49:44,653 | INFO     | job 7053293997 has state=finished
[2026-03-15 05:50:18] 2026-03-15 04:49:44,653 | INFO     | preparing for final server update for job 7053293997 in state='finished'
[2026-03-15 05:50:18] 2026-03-15 04:49:45,210 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,210 | INFO     | reading metadata from: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/jobReport.json
[2026-03-15 05:50:18] 2026-03-15 04:49:45,211 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot124/slots/0/workernode_map.json
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | INFO     | this job has now completed (state=finished)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | INFO     | log transfer has been attempted: DONE
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | INFO     | job 7053293997 has finished - writing final server update
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_469444/.job.ad'
[2026-03-15 05:50:18] 2026-03-15 04:49:45,212 | INFO     | total number of processed events: 400 (read)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,229 | INFO     | using path: /var/lib/boinc/var/slot124/slots/0/PanDA_Pilot-7053293997/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,229 | INFO     | extracted standard info from prmon json
[2026-03-15 05:50:18] 2026-03-15 04:49:45,229 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 05:50:18] 2026-03-15 04:49:45,230 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 05:50:18] 2026-03-15 04:49:45,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 05:50:18] 2026-03-15 04:49:45,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | fitting pss+swap vs Time
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | sum of square deviations: 241429643.0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | sum of deviations: 801672766.4999999
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | mean x: 1773547228.5
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | mean y: 2330934.2934782607
[2026-03-15 05:50:18] 2026-03-15 04:49:45,231 | INFO     | intersect: -5886774046.862471
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | chi2: 0.0009774614130811288
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | current memory leak: 3.32 B/s (using 92 data points, chi2=0.00)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | could have reported an average CPU frequency of 3596 MHz (7 samples)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | ..............................
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . Timing measurements:
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . get job = 0 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . initial setup = 4 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . payload setup = 5 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . stage-in = 0 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . payload execution = 6035 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . stage-out = 0 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | . log creation = 0 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,232 | INFO     | ..............................
[2026-03-15 05:50:18] 2026-03-15 04:49:45,383 | INFO     | 
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | job summary report
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | --------------------------------------------------
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | PanDA job id: 7053293997
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | task id: 48967085
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | errors: (none)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | pilot state: finished 
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | transexitcode: 0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | exeerrorcode: 0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | exeerrordiag: 
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | exitcode: 0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | exitmsg: OK
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | cpuconsumptiontime: 23210 s
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | nevents: 400
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | neventsw: 0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | pid: 4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | pgrp: 4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | corecount: 4
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | event service: False
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | sizes: {0: 2279992, 1: 2280282, 11: 2280282, 6044: 2307100, 6045: 2316122, 6046: 2316206, 6047: 2316528}
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | --------------------------------------------------
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | 
[2026-03-15 05:50:18] 2026-03-15 04:49:45,384 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot124/slots/0
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,404 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,405 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 05:50:18] 2026-03-15 04:49:45,405 | INFO     | job 7053293997 has completed (purged errors)
[2026-03-15 05:50:18] 2026-03-15 04:49:45,405 | INFO     | overall cleanup function is called
[2026-03-15 05:50:18] 2026-03-15 04:49:46,411 | INFO     | --- collectZombieJob: --- 10, [4038663]
[2026-03-15 05:50:18] 2026-03-15 04:49:46,412 | INFO     | zombie collector waiting for pid 4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:46,412 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 05:50:18] 2026-03-15 04:49:46,412 | INFO     | collected zombie processes
[2026-03-15 05:50:18] 2026-03-15 04:49:46,412 | INFO     | will attempt to kill all subprocesses of pid=4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:46,858 | INFO     | process IDs to be killed: [4038663] (in reverse order)
[2026-03-15 05:50:18] 2026-03-15 04:49:47,081 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 05:50:18] 2026-03-15 04:49:47,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 05:50:18] 2026-03-15 04:49:47,111 | INFO     | did not find any defunct processes belonging to 4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:47,141 | INFO     | did not find any defunct processes belonging to 4038663
[2026-03-15 05:50:18] 2026-03-15 04:49:47,141 | INFO     | ready for new job
[2026-03-15 05:50:18] 2026-03-15 04:49:47,141 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 05:50:18] 2026-03-15 04:49:47,142 | INFO     | **************************************
[2026-03-15 05:50:18] 2026-03-15 04:49:47,142 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 05:50:18] 2026-03-15 04:49:47,142 | INFO     | **************************************
[2026-03-15 05:50:18] 2026-03-15 04:49:47,142 | INFO     | 
[2026-03-15 05:50:18] 2026-03-15 04:49:47,148 | INFO     | architecture information:
[2026-03-15 05:50:18] 2026-03-15 04:49:47,148 | INFO     | executing command: cat /etc/os-release
[2026-03-15 05:50:18] 2026-03-15 04:49:47,160 | INFO     | cat /etc/os-release:
[2026-03-15 05:50:18] NAME="CentOS Linux"
[2026-03-15 05:50:18] VERSION="7 (Core)"
[2026-03-15 05:50:18] ID="centos"
[2026-03-15 05:50:18] ID_LIKE="rhel fedora"
[2026-03-15 05:50:18] VERSION_ID="7"
[2026-03-15 05:50:18] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 05:50:18] ANSI_COLOR="0;31"
[2026-03-15 05:50:18] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 05:50:18] HOME_URL="https://www.centos.org/"
[2026-03-15 05:50:18] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 05:50:18] 
[2026-03-15 05:50:18] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 05:50:18] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 05:50:18] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 05:50:18] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 05:50:18] 
[2026-03-15 05:50:18] 2026-03-15 04:49:47,160 | INFO     | **************************************
[2026-03-15 05:50:18] 2026-03-15 04:49:47,662 | INFO     | executing command: df -mP /var/lib/boinc/var/slot124/slots/0
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | INFO     | sufficient remaining disk space (45304774656 B)
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | INFO     | update_server=False
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 05:50:18] 2026-03-15 04:49:47,675 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:50:18] 2026-03-15 04:49:47,676 | INFO     | aborting loop
[2026-03-15 05:50:18] 2026-03-15 04:49:48,080 | INFO     | all data control threads have been joined
[2026-03-15 05:50:18] 2026-03-15 04:49:48,086 | INFO     | all payload control threads have been joined
[2026-03-15 05:50:18] 2026-03-15 04:49:48,680 | INFO     | [job] retrieve thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:48,681 | INFO     | [job] job monitor thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:48,788 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,077 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 05:50:18] 2026-03-15 04:49:49,084 | INFO     | [data] control thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,091 | INFO     | [payload] control thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,246 | INFO     | all job control threads have been joined
[2026-03-15 05:50:18] 2026-03-15 04:49:49,373 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,611 | INFO     | [job] validate thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,731 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,818 | INFO     | [payload] validate_post thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,841 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:49,981 | INFO     | [payload] failed_post thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:50,073 | INFO     | [data] copytool_in thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:50,252 | INFO     | [job] control thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:50,290 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 05:50:18] 2026-03-15 04:49:50,543 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 05:50:18] 2026-03-15 04:49:51,078 | INFO     | [data] copytool_out thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:51,295 | INFO     | [job] queue monitor thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:54,548 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 05:50:18] 2026-03-15 04:49:56,858 | INFO     | [monitor] cgroup control has ended
[2026-03-15 05:50:18] 2026-03-15 04:49:58,498 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22547926869824)>', '<ExcThread(monitor, started 22547686237952)>']
[2026-03-15 05:50:18] 2026-03-15 04:50:03,523 | INFO     | all workflow threads have been joined
[2026-03-15 05:50:18] 2026-03-15 04:50:03,524 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 05:50:18] 2026-03-15 04:50:03,524 | INFO     | traces error code: 0
[2026-03-15 05:50:18] 2026-03-15 04:50:03,524 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | INFO     | PID=4031932 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | INFO     | .. there are 44 such processes running
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | CRITICAL | thread 'MainThread' is not alive
[2026-03-15 05:50:18] 2026-03-15 04:50:17,799 | INFO     | [monitor] control thread has ended
[2026-03-15 05:50:18] 2026-03-15 04:50:17,940 [wrapper] ==== pilot stdout END ====
[2026-03-15 05:50:18] 2026-03-15 04:50:17,942 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 05:50:18] 2026-03-15 04:50:17,944 [wrapper] pilotpid: 4031932
[2026-03-15 05:50:18] 2026-03-15 04:50:17,947 [wrapper] Pilot exit status: 0
[2026-03-15 05:50:18] 2026-03-15 04:50:17,955 [wrapper] pandaids: 7053293997
[2026-03-15 05:50:18] 2026-03-15 04:50:18,085 [wrapper] cleanup supervisor_pilot  718837 4031933
[2026-03-15 05:50:18] 2026-03-15 04:50:18,088 [wrapper] Test setup, not cleaning
[2026-03-15 05:50:18] 2026-03-15 04:50:18,091 [wrapper] apfmon messages muted
[2026-03-15 05:50:18] 2026-03-15 04:50:18,092 [wrapper] ==== wrapper stdout END ====
[2026-03-15 05:50:18] 2026-03-15 04:50:18,094 [wrapper] ==== wrapper stderr END ====
[2026-03-15 05:50:18]  *** Error codes and diagnostics ***
[2026-03-15 05:50:18]     "exeErrorCode": 0,
[2026-03-15 05:50:18]     "exeErrorDiag": "",
[2026-03-15 05:50:18]     "pilotErrorCode": 0,
[2026-03-15 05:50:18]     "pilotErrorDiag": "",
[2026-03-15 05:50:18]  *** Listing of results directory ***
[2026-03-15 05:50:18] total 404876
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc      5111 Mar 13 12:56 queuedata.json
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc    585013 Mar 13 12:56 pilot3.tar.gz
[2026-03-15 05:50:18] -rwx------. 1 boinc boinc     36322 Mar 13 12:56 runpilot2-wrapper.sh
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc       100 Mar 15 04:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 05:50:18] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 04:08 run_atlas
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc       105 Mar 15 04:08 job.xml
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc 213981940 Mar 15 04:08 EVNT.48967083._000841.pool.root.1
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc      6708 Mar 15 04:08 init_data.xml
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc     15845 Mar 15 04:08 start_atlas.sh
[2026-03-15 05:50:18] drwxrwx--x. 2 boinc boinc      4096 Mar 15 04:08 shared
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc    597517 Mar 15 04:08 input.tar.gz
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc         0 Mar 15 04:08 boinc_lockfile
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc      2563 Mar 15 04:08 pandaJob.out
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc   1006481 Mar 15 04:08 agis_schedconf.cvmfs.json
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc   1511579 Mar 15 04:08 agis_ddmendpoints.agis.ALL.json
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc       443 Mar 15 04:08 workernode_map.json
[2026-03-15 05:50:18] drwx------. 5 boinc boinc      4096 Mar 15 04:08 pilot3
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc       529 Mar 15 05:49 boinc_task_state.xml
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc 194362293 Mar 15 05:49 HITS.48967085._020492.pool.root.1
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc      1032 Mar 15 05:49 memory_monitor_summary.json
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc    281483 Mar 15 05:49 log.48967085._020492.job.log.tgz.1
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc        95 Mar 15 05:49 pilot_heartbeat.json
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc      6353 Mar 15 05:49 heartbeat.json
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc      8192 Mar 15 05:50 boinc_mmap_file
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc        27 Mar 15 05:50 wrapper_checkpoint.txt
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc       893 Mar 15 05:50 pilotlog.txt
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc    874702 Mar 15 05:50 log.48967085._020492.job.log.1
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc       357 Mar 15 05:50 output.list
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc       620 Mar 15 05:50 runtime_log
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc   1177600 Mar 15 05:50 result.tar.gz
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc      9221 Mar 15 05:50 runtime_log.err
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc       663 Mar 15 05:50 ERxNDmwIGL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYKpLDmGtv8dn.diag
[2026-03-15 05:50:18] -rw-r--r--. 1 boinc boinc     22527 Mar 15 05:50 stderr.txt
[2026-03-15 05:50:18] HITS file was successfully produced:
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc 194362293 Mar 15 05:49 shared/HITS.pool.root.1
[2026-03-15 05:50:18]  *** Contents of shared directory: ***
[2026-03-15 05:50:18] total 400536
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc 213981940 Mar 15 04:08 ATLAS.root_0
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc     15845 Mar 15 04:08 start_atlas.sh
[2026-03-15 05:50:18] -rw-r--r--. 2 boinc boinc    597517 Mar 15 04:08 input.tar.gz
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc 194362293 Mar 15 05:49 HITS.pool.root.1
[2026-03-15 05:50:18] -rw-------. 1 boinc boinc   1177600 Mar 15 05:50 result.tar.gz
05:50:19 (4027276): run_atlas exited; CPU time 23499.467217
05:50:19 (4027276): called boinc_finish(0)

</stderr_txt>
]]>

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