Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:38:38 (3819243): wrapper (7.7.26015): starting
01:38:38 (3819243): wrapper: running run_atlas (--nthreads 3)
[2026-03-14 01:38:38] Arguments: --nthreads 3
[2026-03-14 01:38:38] Threads: 3
[2026-03-14 01:38:38] Checking for CVMFS
[2026-03-14 01:38:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 01:38:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 01:39:00] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 01:39:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 01:39:00] 2.9.2.0 3667146 401 57376 157259 3 50 25031474 36864000 0 130560 0 155647 99.983 13834 23769 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-14 01:39:00] CVMFS is ok
[2026-03-14 01:39:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 01:39:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 01:39:00] Further information can be found at the LHC@home message board.
[2026-03-14 01:39:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 01:39:00] Checking for apptainer binary...
[2026-03-14 01:39:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 01:39:00] Running /usr/bin/apptainer --version
[2026-03-14 01:39:00] apptainer version 1.4.1-1.1
[2026-03-14 01:39:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 01:39:00] atlasA221b
[2026-03-14 01:39:00] apptainer works
[2026-03-14 01:39:00] Set ATHENA_PROC_NUMBER=3
[2026-03-14 01:39:00] Set ATHENA_CORE_NUMBER=3
[2026-03-14 01:39:01] Starting ATLAS job with PandaID=7043761500
[2026-03-14 01:39:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 03:05:43]  *** The last 200 lines of the pilot log: ***
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,944 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | job 7043761500 has completed (purged errors)
[2026-03-14 03:05:43] 2026-03-14 02:05:11,945 | INFO     | overall cleanup function is called
[2026-03-14 03:05:43] 2026-03-14 02:05:12,950 | INFO     | --- collectZombieJob: --- 10, [3827914]
[2026-03-14 03:05:43] 2026-03-14 02:05:12,950 | INFO     | zombie collector waiting for pid 3827914
[2026-03-14 03:05:43] 2026-03-14 02:05:12,951 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 03:05:43] 2026-03-14 02:05:12,951 | INFO     | collected zombie processes
[2026-03-14 03:05:43] 2026-03-14 02:05:12,951 | INFO     | will attempt to kill all subprocesses of pid=3827914
[2026-03-14 03:05:43] 2026-03-14 02:05:13,014 | INFO     | process IDs to be killed: [3827914] (in reverse order)
[2026-03-14 03:05:43] 2026-03-14 02:05:13,046 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 03:05:43] 2026-03-14 02:05:13,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 03:05:43] 2026-03-14 02:05:13,048 | INFO     | did not find any defunct processes belonging to 3827914
[2026-03-14 03:05:43] 2026-03-14 02:05:13,050 | INFO     | did not find any defunct processes belonging to 3827914
[2026-03-14 03:05:43] 2026-03-14 02:05:13,050 | INFO     | ready for new job
[2026-03-14 03:05:43] 2026-03-14 02:05:13,050 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | **************************************
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | **************************************
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | 
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | architecture information:
[2026-03-14 03:05:43] 2026-03-14 02:05:13,051 | INFO     | executing command: cat /etc/os-release
[2026-03-14 03:05:43] 2026-03-14 02:05:13,061 | INFO     | cat /etc/os-release:
[2026-03-14 03:05:43] NAME="CentOS Linux"
[2026-03-14 03:05:43] VERSION="7 (Core)"
[2026-03-14 03:05:43] ID="centos"
[2026-03-14 03:05:43] ID_LIKE="rhel fedora"
[2026-03-14 03:05:43] VERSION_ID="7"
[2026-03-14 03:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 03:05:43] ANSI_COLOR="0;31"
[2026-03-14 03:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 03:05:43] HOME_URL="https://www.centos.org/"
[2026-03-14 03:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 03:05:43] 
[2026-03-14 03:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 03:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 03:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 03:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 03:05:43] 
[2026-03-14 03:05:43] 2026-03-14 02:05:13,061 | INFO     | **************************************
[2026-03-14 03:05:43] 2026-03-14 02:05:13,563 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | INFO     | sufficient remaining disk space (333771177984 B)
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | INFO     | update_server=False
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 03:05:43] 2026-03-14 02:05:13,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 03:05:43] 2026-03-14 02:05:13,575 | INFO     | aborting loop
[2026-03-14 03:05:43] 2026-03-14 02:05:14,350 | INFO     | all payload control threads have been joined
[2026-03-14 03:05:43] 2026-03-14 02:05:14,442 | INFO     | all job control threads have been joined
[2026-03-14 03:05:43] 2026-03-14 02:05:14,579 | INFO     | [job] retrieve thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:14,580 | INFO     | [job] job monitor thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:14,580 | INFO     | [job] queue monitor thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:14,610 | INFO     | all data control threads have been joined
[2026-03-14 03:05:43] 2026-03-14 02:05:15,182 | INFO     | [job] validate thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,290 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,305 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,355 | INFO     | [payload] control thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,361 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,447 | INFO     | [job] control thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,468 | INFO     | [data] copytool_in thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,580 | INFO     | [data] copytool_out thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,615 | INFO     | [data] control thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,634 | INFO     | [payload] validate_post thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:15,769 | INFO     | [payload] failed_post thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:17,580 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:21,917 | INFO     | [monitor] cgroup control has ended
[2026-03-14 03:05:43] 2026-03-14 02:05:24,393 | INFO     | job.realtimelogging is not enabled
[2026-03-14 03:05:43] 2026-03-14 02:05:25,398 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 03:05:43] 2026-03-14 02:05:25,864 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139676570654528)>', '<ExcThread(monitor, started 139675943556864)>']
[2026-03-14 03:05:43] 2026-03-14 02:05:30,872 | INFO     | all workflow threads have been joined
[2026-03-14 03:05:43] 2026-03-14 02:05:30,872 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 03:05:43] 2026-03-14 02:05:30,872 | INFO     | traces error code: 0
[2026-03-14 03:05:43] 2026-03-14 02:05:30,872 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 03:05:43] 2026-03-14 02:05:43,250 | INFO     | PID=3823407 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 03:05:43] 2026-03-14 02:05:43,251 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 03:05:43] 2026-03-14 02:05:43,251 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 03:05:43] 2026-03-14 02:05:43,251 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 03:05:43] 2026-03-14 02:05:43,251 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 03:05:43] 2026-03-14 02:05:43,251 | INFO     | [monitor] control thread has ended
[2026-03-14 03:05:43] 2026-03-14 02:05:43,298 [wrapper] ==== pilot stdout END ====
[2026-03-14 03:05:43] 2026-03-14 02:05:43,301 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 03:05:43] 2026-03-14 02:05:43,304 [wrapper] pilotpid: 3823407
[2026-03-14 03:05:43] 2026-03-14 02:05:43,307 [wrapper] Pilot exit status: 0
[2026-03-14 03:05:43] 2026-03-14 02:05:43,314 [wrapper] pandaids: 7043761500
[2026-03-14 03:05:43] 2026-03-14 02:05:43,334 [wrapper] cleanup supervisor_pilot 3851170 3823408
[2026-03-14 03:05:43] 2026-03-14 02:05:43,337 [wrapper] Test setup, not cleaning
[2026-03-14 03:05:43] 2026-03-14 02:05:43,340 [wrapper] apfmon messages muted
[2026-03-14 03:05:43] 2026-03-14 02:05:43,342 [wrapper] ==== wrapper stdout END ====
[2026-03-14 03:05:43] 2026-03-14 02:05:43,345 [wrapper] ==== wrapper stderr END ====
[2026-03-14 03:05:43]  *** Error codes and diagnostics ***
[2026-03-14 03:05:43]     "exeErrorCode": 0,
[2026-03-14 03:05:43]     "exeErrorDiag": "",
[2026-03-14 03:05:43]     "pilotErrorCode": 0,
[2026-03-14 03:05:43]     "pilotErrorDiag": "",
[2026-03-14 03:05:43]  *** Listing of results directory ***
[2026-03-14 03:05:43] total 614672
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc    585013 Mar 13 05:05 pilot3.tar.gz
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc      5111 Mar 13 05:37 queuedata.json
[2026-03-14 03:05:43] -rwx------ 1 boinc boinc     36322 Mar 13 05:37 runpilot2-wrapper.sh
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc       100 Mar 14 01:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 03:05:43] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 01:38 run_atlas
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc       105 Mar 14 01:38 job.xml
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc 441294784 Mar 14 01:38 EVNT.46701403._001546.pool.root.1
[2026-03-14 03:05:43] drwxrwx--x 2 boinc boinc      4096 Mar 14 01:38 shared
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc    597534 Mar 14 01:38 input.tar.gz
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc     15845 Mar 14 01:38 start_atlas.sh
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc         0 Mar 14 01:38 boinc_setup_complete
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc      6199 Mar 14 01:38 init_data.xml
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc         0 Mar 14 01:38 boinc_lockfile
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc      2563 Mar 14 01:39 pandaJob.out
[2026-03-14 03:05:43] -rw------- 1 boinc boinc   1006713 Mar 14 01:39 agis_schedconf.cvmfs.json
[2026-03-14 03:05:43] -rw------- 1 boinc boinc   1511579 Mar 14 01:39 agis_ddmendpoints.agis.ALL.json
[2026-03-14 03:05:43] -rw------- 1 boinc boinc       431 Mar 14 01:39 workernode_map.json
[2026-03-14 03:05:43] drwx------ 5 boinc boinc      4096 Mar 14 01:39 pilot3
[2026-03-14 03:05:43] -rw------- 1 boinc boinc 182170996 Mar 14 03:04 HITS.48955010._027606.pool.root.1
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc       530 Mar 14 03:04 boinc_task_state.xml
[2026-03-14 03:05:43] -rw------- 1 boinc boinc      1040 Mar 14 03:05 memory_monitor_summary.json
[2026-03-14 03:05:43] -rw------- 1 boinc boinc    267572 Mar 14 03:05 log.48955010._027606.job.log.tgz.1
[2026-03-14 03:05:43] -rw------- 1 boinc boinc      6350 Mar 14 03:05 heartbeat.json
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc      8192 Mar 14 03:05 boinc_mmap_file
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc        27 Mar 14 03:05 wrapper_checkpoint.txt
[2026-03-14 03:05:43] -rw------- 1 boinc boinc       747 Mar 14 03:05 pilotlog.txt
[2026-03-14 03:05:43] -rw------- 1 boinc boinc        95 Mar 14 03:05 pilot_heartbeat.json
[2026-03-14 03:05:43] -rw------- 1 boinc boinc    752603 Mar 14 03:05 log.48955010._027606.job.log.1
[2026-03-14 03:05:43] -rw------- 1 boinc boinc       357 Mar 14 03:05 output.list
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc       620 Mar 14 03:05 runtime_log
[2026-03-14 03:05:43] -rw------- 1 boinc boinc   1034240 Mar 14 03:05 result.tar.gz
[2026-03-14 03:05:43] -rw------- 1 boinc boinc       661 Mar 14 03:05 yFkNDmnS9K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmICmLDmXtBt6n.diag
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc      8916 Mar 14 03:05 runtime_log.err
[2026-03-14 03:05:43] -rw-r--r-- 1 boinc boinc     12026 Mar 14 03:05 stderr.txt
[2026-03-14 03:05:43] HITS file was successfully produced:
[2026-03-14 03:05:43] -rw------- 1 boinc boinc 182170996 Mar 14 03:04 shared/HITS.pool.root.1
[2026-03-14 03:05:43]  *** Contents of shared directory: ***
[2026-03-14 03:05:43] total 610476
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc 441294784 Mar 14 01:38 ATLAS.root_0
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc    597534 Mar 14 01:38 input.tar.gz
[2026-03-14 03:05:43] -rw-r--r-- 2 boinc boinc     15845 Mar 14 01:38 start_atlas.sh
[2026-03-14 03:05:43] -rw------- 1 boinc boinc 182170996 Mar 14 03:04 HITS.pool.root.1
[2026-03-14 03:05:43] -rw------- 1 boinc boinc   1034240 Mar 14 03:05 result.tar.gz
03:05:44 (3819243): run_atlas exited; CPU time 14751.096310
03:05:44 (3819243): called boinc_finish(0)

</stderr_txt>
]]>

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