Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:44:19 (3716559): wrapper (7.7.26015): starting
21:44:19 (3716559): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 21:44:19] Arguments: --nthreads 3
[2026-03-13 21:44:19] Threads: 3
[2026-03-13 21:44:19] Checking for CVMFS
[2026-03-13 21:44:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 21:44:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 21:44:20] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 21:44:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 21:44:20] 2.9.2.0 100074 23297 90216 157253 1 50 33667716 36864000 0 130560 0 9173849 99.982 873758 10494 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 21:44:20] CVMFS is ok
[2026-03-13 21:44:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 21:44:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 21:44:20] Further information can be found at the LHC@home message board.
[2026-03-13 21:44:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 21:44:20] Checking for apptainer binary...
[2026-03-13 21:44:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 21:44:20] Running /usr/bin/apptainer --version
[2026-03-13 21:44:20] apptainer version 1.4.1-1.1
[2026-03-13 21:44:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 21:44:20] thA323
[2026-03-13 21:44:20] apptainer works
[2026-03-13 21:44:20] Set ATHENA_PROC_NUMBER=3
[2026-03-13 21:44:20] Set ATHENA_CORE_NUMBER=3
[2026-03-13 21:44:20] Starting ATLAS job with PandaID=7043761460
[2026-03-13 21:44:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 23:02:46]  *** The last 200 lines of the pilot log: ***
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,873 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | job 7043761460 has completed (purged errors)
[2026-03-13 23:02:46] 2026-03-13 22:02:14,874 | INFO     | overall cleanup function is called
[2026-03-13 23:02:46] 2026-03-13 22:02:15,881 | INFO     | --- collectZombieJob: --- 10, [3725034]
[2026-03-13 23:02:46] 2026-03-13 22:02:15,881 | INFO     | zombie collector waiting for pid 3725034
[2026-03-13 23:02:46] 2026-03-13 22:02:15,881 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 23:02:46] 2026-03-13 22:02:15,881 | INFO     | collected zombie processes
[2026-03-13 23:02:46] 2026-03-13 22:02:15,881 | INFO     | will attempt to kill all subprocesses of pid=3725034
[2026-03-13 23:02:46] 2026-03-13 22:02:15,942 | INFO     | process IDs to be killed: [3725034] (in reverse order)
[2026-03-13 23:02:46] 2026-03-13 22:02:15,973 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 23:02:46] 2026-03-13 22:02:15,974 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 23:02:46] 2026-03-13 22:02:15,975 | INFO     | did not find any defunct processes belonging to 3725034
[2026-03-13 23:02:46] 2026-03-13 22:02:15,977 | INFO     | did not find any defunct processes belonging to 3725034
[2026-03-13 23:02:46] 2026-03-13 22:02:15,977 | INFO     | ready for new job
[2026-03-13 23:02:46] 2026-03-13 22:02:15,977 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | **************************************
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | **************************************
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | 
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | architecture information:
[2026-03-13 23:02:46] 2026-03-13 22:02:15,978 | INFO     | executing command: cat /etc/os-release
[2026-03-13 23:02:46] 2026-03-13 22:02:15,988 | INFO     | cat /etc/os-release:
[2026-03-13 23:02:46] NAME="CentOS Linux"
[2026-03-13 23:02:46] VERSION="7 (Core)"
[2026-03-13 23:02:46] ID="centos"
[2026-03-13 23:02:46] ID_LIKE="rhel fedora"
[2026-03-13 23:02:46] VERSION_ID="7"
[2026-03-13 23:02:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 23:02:46] ANSI_COLOR="0;31"
[2026-03-13 23:02:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 23:02:46] HOME_URL="https://www.centos.org/"
[2026-03-13 23:02:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 23:02:46] 
[2026-03-13 23:02:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 23:02:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 23:02:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 23:02:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 23:02:46] 
[2026-03-13 23:02:46] 2026-03-13 22:02:15,988 | INFO     | **************************************
[2026-03-13 23:02:46] 2026-03-13 22:02:16,491 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | INFO     | sufficient remaining disk space (268820283392 B)
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | INFO     | update_server=False
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 23:02:46] 2026-03-13 22:02:16,504 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 23:02:46] 2026-03-13 22:02:16,652 | INFO     | all payload control threads have been joined
[2026-03-13 23:02:46] 2026-03-13 22:02:16,963 | INFO     | all job control threads have been joined
[2026-03-13 23:02:46] 2026-03-13 22:02:17,274 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 23:02:46] 2026-03-13 22:02:17,275 | INFO     | aborting loop
[2026-03-13 23:02:46] 2026-03-13 22:02:17,510 | INFO     | [job] retrieve thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:17,510 | INFO     | [job] queue monitor thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:17,594 | INFO     | all data control threads have been joined
[2026-03-13 23:02:46] 2026-03-13 22:02:17,644 | INFO     | [data] copytool_in thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:17,658 | INFO     | [payload] control thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:17,835 | INFO     | [payload] failed_post thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:17,969 | INFO     | [job] control thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,068 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,279 | INFO     | [job] job monitor thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,404 | INFO     | [payload] validate_post thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,507 | INFO     | [data] copytool_out thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,600 | INFO     | [data] control thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,886 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,912 | INFO     | [job] validate thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:18,919 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:19,317 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 23:02:46] 2026-03-13 22:02:23,322 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:27,015 | INFO     | job.realtimelogging is not enabled
[2026-03-13 23:02:46] 2026-03-13 22:02:28,021 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 23:02:46] 2026-03-13 22:02:36,271 | INFO     | [monitor] cgroup control has ended
[2026-03-13 23:02:46] 2026-03-13 22:02:37,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140264321419072)>', '<ExcThread(monitor, started 140263674595072)>']
[2026-03-13 23:02:46] 2026-03-13 22:02:42,486 | INFO     | all workflow threads have been joined
[2026-03-13 23:02:46] 2026-03-13 22:02:42,486 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 23:02:46] 2026-03-13 22:02:42,486 | INFO     | traces error code: 0
[2026-03-13 23:02:46] 2026-03-13 22:02:42,486 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | INFO     | PID=3720604 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 23:02:46] 2026-03-13 22:02:46,274 | INFO     | [monitor] control thread has ended
[2026-03-13 23:02:46] 2026-03-13 22:02:46,325 [wrapper] ==== pilot stdout END ====
[2026-03-13 23:02:46] 2026-03-13 22:02:46,327 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 23:02:46] 2026-03-13 22:02:46,330 [wrapper] pilotpid: 3720604
[2026-03-13 23:02:46] 2026-03-13 22:02:46,332 [wrapper] Pilot exit status: 0
[2026-03-13 23:02:46] 2026-03-13 22:02:46,340 [wrapper] pandaids: 7043761460
[2026-03-13 23:02:46] 2026-03-13 22:02:46,361 [wrapper] cleanup supervisor_pilot 3730502 3720605
[2026-03-13 23:02:46] 2026-03-13 22:02:46,363 [wrapper] Test setup, not cleaning
[2026-03-13 23:02:46] 2026-03-13 22:02:46,366 [wrapper] apfmon messages muted
[2026-03-13 23:02:46] 2026-03-13 22:02:46,368 [wrapper] ==== wrapper stdout END ====
[2026-03-13 23:02:46] 2026-03-13 22:02:46,371 [wrapper] ==== wrapper stderr END ====
[2026-03-13 23:02:46]  *** Error codes and diagnostics ***
[2026-03-13 23:02:46]     "exeErrorCode": 0,
[2026-03-13 23:02:46]     "exeErrorDiag": "",
[2026-03-13 23:02:46]     "pilotErrorCode": 0,
[2026-03-13 23:02:46]     "pilotErrorDiag": "",
[2026-03-13 23:02:46]  *** Listing of results directory ***
[2026-03-13 23:02:46] total 618444
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc    585013 Mar 13 05:05 pilot3.tar.gz
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc      5111 Mar 13 05:37 queuedata.json
[2026-03-13 23:02:46] -rwx------ 1 boinc boinc     36322 Mar 13 05:37 runpilot2-wrapper.sh
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc       100 Mar 13 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 23:02:46] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 21:44 run_atlas
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc       105 Mar 13 21:44 job.xml
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc 439631956 Mar 13 21:44 EVNT.46701403._001545.pool.root.1
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc    597531 Mar 13 21:44 input.tar.gz
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc     15845 Mar 13 21:44 start_atlas.sh
[2026-03-13 23:02:46] drwxrwx--x 2 boinc boinc      4096 Mar 13 21:44 shared
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc         0 Mar 13 21:44 boinc_setup_complete
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc      6445 Mar 13 21:44 init_data.xml
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc         0 Mar 13 21:44 boinc_lockfile
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc      2564 Mar 13 21:44 pandaJob.out
[2026-03-13 23:02:46] -rw------- 1 boinc boinc   1006721 Mar 13 21:44 agis_schedconf.cvmfs.json
[2026-03-13 23:02:46] -rw------- 1 boinc boinc   1511579 Mar 13 21:44 agis_ddmendpoints.agis.ALL.json
[2026-03-13 23:02:46] -rw------- 1 boinc boinc       413 Mar 13 21:44 workernode_map.json
[2026-03-13 23:02:46] drwx------ 5 boinc boinc      4096 Mar 13 21:44 pilot3
[2026-03-13 23:02:46] -rw------- 1 boinc boinc 187817860 Mar 13 23:01 HITS.48955010._027566.pool.root.1
[2026-03-13 23:02:46] -rw------- 1 boinc boinc        95 Mar 13 23:01 pilot_heartbeat.json
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc       530 Mar 13 23:02 boinc_task_state.xml
[2026-03-13 23:02:46] -rw------- 1 boinc boinc      1017 Mar 13 23:02 memory_monitor_summary.json
[2026-03-13 23:02:46] -rw------- 1 boinc boinc    272666 Mar 13 23:02 log.48955010._027566.job.log.tgz.1
[2026-03-13 23:02:46] -rw------- 1 boinc boinc      6296 Mar 13 23:02 heartbeat.json
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc        27 Mar 13 23:02 wrapper_checkpoint.txt
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc      8192 Mar 13 23:02 boinc_mmap_file
[2026-03-13 23:02:46] -rw------- 1 boinc boinc       747 Mar 13 23:02 pilotlog.txt
[2026-03-13 23:02:46] -rw------- 1 boinc boinc    686697 Mar 13 23:02 log.48955010._027566.job.log.1
[2026-03-13 23:02:46] -rw------- 1 boinc boinc       357 Mar 13 23:02 output.list
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc       620 Mar 13 23:02 runtime_log
[2026-03-13 23:02:46] -rw------- 1 boinc boinc    972800 Mar 13 23:02 result.tar.gz
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc      8896 Mar 13 23:02 runtime_log.err
[2026-03-13 23:02:46] -rw------- 1 boinc boinc       657 Mar 13 23:02 bEbMDmnS9K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmuBmLDmAVTkXn.diag
[2026-03-13 23:02:46] -rw-r--r-- 1 boinc boinc     12543 Mar 13 23:02 stderr.txt
[2026-03-13 23:02:46] HITS file was successfully produced:
[2026-03-13 23:02:46] -rw------- 1 boinc boinc 187817860 Mar 13 23:01 shared/HITS.pool.root.1
[2026-03-13 23:02:46]  *** Contents of shared directory: ***
[2026-03-13 23:02:46] total 614304
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc 439631956 Mar 13 21:44 ATLAS.root_0
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc    597531 Mar 13 21:44 input.tar.gz
[2026-03-13 23:02:46] -rw-r--r-- 2 boinc boinc     15845 Mar 13 21:44 start_atlas.sh
[2026-03-13 23:02:46] -rw------- 1 boinc boinc 187817860 Mar 13 23:01 HITS.pool.root.1
[2026-03-13 23:02:46] -rw------- 1 boinc boinc    972800 Mar 13 23:02 result.tar.gz
23:02:48 (3716559): run_atlas exited; CPU time 13334.254390
23:02:48 (3716559): called boinc_finish(0)

</stderr_txt>
]]>

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