Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:29:37 (575935): wrapper (7.7.26015): starting
05:29:37 (575935): wrapper: running run_atlas (--nthreads 4)
[2026-03-15 05:29:37] Arguments: --nthreads 4
[2026-03-15 05:29:37] Threads: 4
[2026-03-15 05:29:37] Checking for CVMFS
[2026-03-15 05:29:37] No cvmfs_config command found, will try listing directly
[2026-03-15 05:29:37] CVMFS is ok
[2026-03-15 05:29:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-15 05:29:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-15 05:29:37] Further information can be found at the LHC@home message board.
[2026-03-15 05:29:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-15 05:29:37] Checking for apptainer binary...
[2026-03-15 05:29:37] which: no apptainer in ((null))
[2026-03-15 05:29:37] apptainer is not installed, using version from CVMFS
[2026-03-15 05:29:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-15 05:29:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot236/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut26.grid.cesnet.cz
[2026-03-15 05:29:37] apptainer works
[2026-03-15 05:29:37] Set ATHENA_PROC_NUMBER=4
[2026-03-15 05:29:37] Set ATHENA_CORE_NUMBER=4
[2026-03-15 05:29:37] Starting ATLAS job with PandaID=7053291654
[2026-03-15 05:29:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot236/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-15 07:08:04]  *** The last 200 lines of the pilot log: ***
[2026-03-15 07:08:04]  lfn=log.48967085._019536.job.log.tgz.1
[2026-03-15 07:08:04]  mtime=0
[2026-03-15 07:08:04]  protocol_id=None
[2026-03-15 07:08:04]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-15 07:08:04]  replicas=None
[2026-03-15 07:08:04]  scope=mc23_13p6TeV
[2026-03-15 07:08:04]  status=None
[2026-03-15 07:08:04]  status_code=0
[2026-03-15 07:08:04]  storage_token=
[2026-03-15 07:08:04]  surl=/var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7053291654/log.48967085._019536.job.log.tgz.1
[2026-03-15 07:08:04]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/60/log.48967085._019536.job.log.tgz.1
[2026-03-15 07:08:04]  workdir=None
[2026-03-15 07:08:04] ]
[2026-03-15 07:08:04] 2026-03-15 06:07:07,834 | INFO     | transferring file log.48967085._019536.job.log.tgz.1 from /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7053291654/log.48967085._019536.job.log.tgz.1 to /var/lib/
[2026-03-15 07:08:04] 2026-03-15 06:07:07,835 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7053291654/log.48967085._019536.job.log.tgz.1 /var/lib/boinc/var/slot236/slots/0/
[2026-03-15 07:08:04] 2026-03-15 06:07:07,850 | INFO     | adding to output.list: log.48967085._019536.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/f0/60/log.48967085._019536.job.log.tg
[2026-03-15 07:08:04] 2026-03-15 06:07:07,850 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-15 07:08:04] 2026-03-15 06:07:07,851 | INFO     | summary of transferred files:
[2026-03-15 07:08:04] 2026-03-15 06:07:07,851 | INFO     |  -- lfn=log.48967085._019536.job.log.tgz.1, status_code=0, status=transferred
[2026-03-15 07:08:04] 2026-03-15 06:07:07,851 | INFO     | stage-out finished correctly
[2026-03-15 07:08:04] 2026-03-15 06:07:08,712 | INFO     | PID=584632 has CPU usage=9.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 07:08:04] 2026-03-15 06:07:08,713 | INFO     | .. there are 43 such processes running
[2026-03-15 07:08:04] 2026-03-15 06:07:09,713 | INFO     | time since job start (5839s) is within the limit (345600.0s)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,622 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-15 07:08:04] 2026-03-15 06:07:10,672 | INFO     | job 7053291654 has state=finished
[2026-03-15 07:08:04] 2026-03-15 06:07:10,673 | INFO     | preparing for final server update for job 7053291654 in state='finished'
[2026-03-15 07:08:04] 2026-03-15 06:07:10,673 | INFO     | reading metadata from: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7053291654/jobReport.json
[2026-03-15 07:08:04] 2026-03-15 06:07:10,675 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot236/slots/0/workernode_map.json
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | INFO     | this job has now completed (state=finished)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | INFO     | log transfer has been attempted: DONE
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | INFO     | job 7053291654 has finished - writing final server update
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_230160/.job.ad'
[2026-03-15 07:08:04] 2026-03-15 06:07:10,676 | INFO     | total number of processed events: 400 (read)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,706 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/PanDA_Pilot-7053291654/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,707 | INFO     | extracted standard info from prmon json
[2026-03-15 07:08:04] 2026-03-15 06:07:10,707 | INFO     | extracted standard memory fields from prmon json
[2026-03-15 07:08:04] 2026-03-15 06:07:10,707 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-15 07:08:04] 2026-03-15 06:07:10,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-15 07:08:04] 2026-03-15 06:07:10,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | fitting pss+swap vs Time
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | sum of square deviations: 218571540.0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | sum of deviations: -92548406.99999996
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | mean x: 1773552001.0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | mean y: 2318016.5730337077
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | intersect: 753282265.7347147
[2026-03-15 07:08:04] 2026-03-15 06:07:10,709 | INFO     | chi2: 0.00018111841834919548
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | current memory leak: -0.42 B/s (using 89 data points, chi2=0.00)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | could have reported an average CPU frequency of 3599 MHz (7 samples)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | ..............................
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . Timing measurements:
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . get job = 0 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . initial setup = 5 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . payload setup = 5 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . stage-in = 0 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . payload execution = 5816 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . stage-out = 0 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | . log creation = 0 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,710 | INFO     | ..............................
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | 
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | job summary report
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | --------------------------------------------------
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | PanDA job id: 7053291654
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | task id: 48967085
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | errors: (none)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | pilot state: finished 
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | transexitcode: 0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | exeerrorcode: 0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | exeerrordiag: 
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | exitcode: 0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | exitmsg: OK
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | cpuconsumptiontime: 22168 s
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | nevents: 400
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | neventsw: 0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | pid: 596674
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | pgrp: 596674
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | corecount: 4
[2026-03-15 07:08:04] 2026-03-15 06:07:10,761 | INFO     | event service: False
[2026-03-15 07:08:04] 2026-03-15 06:07:10,762 | INFO     | sizes: {0: 2280252, 11: 2280252, 5825: 2306985, 5826: 2306984, 5827: 2316062, 5829: 2316440}
[2026-03-15 07:08:04] 2026-03-15 06:07:10,762 | INFO     | --------------------------------------------------
[2026-03-15 07:08:04] 2026-03-15 06:07:10,762 | INFO     | 
[2026-03-15 07:08:04] 2026-03-15 06:07:10,762 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot236/slots/0
[2026-03-15 07:08:04] 2026-03-15 06:07:10,778 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | job 7053291654 has completed (purged errors)
[2026-03-15 07:08:04] 2026-03-15 06:07:10,780 | INFO     | overall cleanup function is called
[2026-03-15 07:08:04] 2026-03-15 06:07:11,141 | WARNING  | process 596674 can no longer be monitored (due to stat problems) - aborting
[2026-03-15 07:08:04] 2026-03-15 06:07:11,467 | INFO     | using path: /var/lib/boinc/var/slot236/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-03-15 07:08:04] 2026-03-15 06:07:11,787 | INFO     | --- collectZombieJob: --- 10, [596674]
[2026-03-15 07:08:04] 2026-03-15 06:07:11,788 | INFO     | zombie collector waiting for pid 596674
[2026-03-15 07:08:04] 2026-03-15 06:07:11,788 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-15 07:08:04] 2026-03-15 06:07:11,788 | INFO     | collected zombie processes
[2026-03-15 07:08:04] 2026-03-15 06:07:11,788 | INFO     | will attempt to kill all subprocesses of pid=596674
[2026-03-15 07:08:04] 2026-03-15 06:07:12,265 | INFO     | number of running child processes to parent process 596674: 1
[2026-03-15 07:08:04] 2026-03-15 06:07:12,265 | INFO     | maximum number of monitored processes: 6
[2026-03-15 07:08:04] 2026-03-15 06:07:12,265 | INFO     | aborting job monitoring since job object (job id=7053291654) has expired
[2026-03-15 07:08:04] 2026-03-15 06:07:12,570 | INFO     | process IDs to be killed: [596674] (in reverse order)
[2026-03-15 07:08:04] 2026-03-15 06:07:12,791 | WARNING  | found no corresponding commands to process id(s)
[2026-03-15 07:08:04] 2026-03-15 06:07:12,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-15 07:08:04] 2026-03-15 06:07:12,822 | INFO     | did not find any defunct processes belonging to 596674
[2026-03-15 07:08:04] 2026-03-15 06:07:12,850 | INFO     | did not find any defunct processes belonging to 596674
[2026-03-15 07:08:04] 2026-03-15 06:07:12,851 | INFO     | ready for new job
[2026-03-15 07:08:04] 2026-03-15 06:07:12,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-15 07:08:04] 2026-03-15 06:07:12,852 | INFO     | **************************************
[2026-03-15 07:08:04] 2026-03-15 06:07:12,852 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-15 07:08:04] 2026-03-15 06:07:12,852 | INFO     | **************************************
[2026-03-15 07:08:04] 2026-03-15 06:07:12,852 | INFO     | 
[2026-03-15 07:08:04] 2026-03-15 06:07:12,859 | INFO     | architecture information:
[2026-03-15 07:08:04] 2026-03-15 06:07:12,859 | INFO     | executing command: cat /etc/os-release
[2026-03-15 07:08:04] 2026-03-15 06:07:12,872 | INFO     | cat /etc/os-release:
[2026-03-15 07:08:04] NAME="CentOS Linux"
[2026-03-15 07:08:04] VERSION="7 (Core)"
[2026-03-15 07:08:04] ID="centos"
[2026-03-15 07:08:04] ID_LIKE="rhel fedora"
[2026-03-15 07:08:04] VERSION_ID="7"
[2026-03-15 07:08:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-15 07:08:04] ANSI_COLOR="0;31"
[2026-03-15 07:08:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-15 07:08:04] HOME_URL="https://www.centos.org/"
[2026-03-15 07:08:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-15 07:08:04] 
[2026-03-15 07:08:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-15 07:08:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-15 07:08:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-15 07:08:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-15 07:08:04] 
[2026-03-15 07:08:04] 2026-03-15 06:07:12,872 | INFO     | **************************************
[2026-03-15 07:08:04] 2026-03-15 06:07:13,375 | INFO     | executing command: df -mP /var/lib/boinc/var/slot236/slots/0
[2026-03-15 07:08:04] 2026-03-15 06:07:13,391 | INFO     | sufficient remaining disk space (58422460416 B)
[2026-03-15 07:08:04] 2026-03-15 06:07:13,391 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-15 07:08:04] 2026-03-15 06:07:13,391 | INFO     | current server update state: UPDATING_FINAL
[2026-03-15 07:08:04] 2026-03-15 06:07:13,391 | INFO     | update_server=False
[2026-03-15 07:08:04] 2026-03-15 06:07:13,391 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-15 07:08:04] 2026-03-15 06:07:13,392 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-15 07:08:04] 2026-03-15 06:07:13,392 | INFO     | aborting loop
[2026-03-15 07:08:04] 2026-03-15 06:07:13,408 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-15 07:08:04] 2026-03-15 06:07:13,858 | INFO     | all data control threads have been joined
[2026-03-15 07:08:04] 2026-03-15 06:07:14,054 | INFO     | all job control threads have been joined
[2026-03-15 07:08:04] 2026-03-15 06:07:14,392 | INFO     | [job] retrieve thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:14,397 | INFO     | [job] job monitor thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:14,519 | INFO     | [payload] validate_post thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:14,638 | INFO     | all payload control threads have been joined
[2026-03-15 07:08:04] 2026-03-15 06:07:14,859 | INFO     | [data] control thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:14,947 | INFO     | [payload] execute_payloads thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,060 | INFO     | [job] control thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,085 | INFO     | [job] validate thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,362 | INFO     | [payload] failed_post thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,414 | INFO     | [data] copytool_out thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,639 | INFO     | [job] create_data_payload thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,639 | INFO     | [payload] validate_pre thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,643 | INFO     | [payload] control thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:15,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-15 07:08:04] 2026-03-15 06:07:15,856 | INFO     | [data] copytool_in thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:16,677 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-15 07:08:04] 2026-03-15 06:07:16,778 | INFO     | [job] queue monitor thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:20,682 | INFO     | [data] queue_monitor thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:23,936 | INFO     | job.realtimelogging is not enabled
[2026-03-15 07:08:04] 2026-03-15 06:07:24,941 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-15 07:08:04] 2026-03-15 06:07:43,387 | INFO     | PID=584632 has CPU usage=8.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-15 07:08:04] 2026-03-15 06:07:43,387 | INFO     | .. there are 43 such processes running
[2026-03-15 07:08:04] 2026-03-15 06:07:43,387 | INFO     | found 0 job(s) in 20 queues
[2026-03-15 07:08:04] 2026-03-15 06:07:43,387 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-15 07:08:04] 2026-03-15 06:07:43,387 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-15 07:08:04] 2026-03-15 06:07:59,301 | INFO     | [monitor] cgroup control has ended
[2026-03-15 07:08:04] 2026-03-15 06:07:59,385 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23233707226944)>', '<ExcThread(monitor, started 23233452816128)>']
[2026-03-15 07:08:04] 2026-03-15 06:07:59,471 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-15 07:08:04] 2026-03-15 06:07:59,471 | INFO     | [monitor] control thread has ended
[2026-03-15 07:08:04] 2026-03-15 06:08:04,410 | INFO     | all workflow threads have been joined
[2026-03-15 07:08:04] 2026-03-15 06:08:04,411 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-15 07:08:04] 2026-03-15 06:08:04,411 | INFO     | traces error code: 0
[2026-03-15 07:08:04] 2026-03-15 06:08:04,411 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-15 07:08:04] 2026-03-15 06:08:04,589 [wrapper] ==== pilot stdout END ====
[2026-03-15 07:08:04] 2026-03-15 06:08:04,591 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-15 07:08:04] 2026-03-15 06:08:04,593 [wrapper] pilotpid: 584632
[2026-03-15 07:08:04] 2026-03-15 06:08:04,595 [wrapper] Pilot exit status: 0
[2026-03-15 07:08:04] 2026-03-15 06:08:04,601 [wrapper] pandaids: 7053291654
[2026-03-15 07:08:04] 2026-03-15 06:08:04,733 [wrapper] cleanup supervisor_pilot 1508535 584633
[2026-03-15 07:08:04] 2026-03-15 06:08:04,735 [wrapper] Test setup, not cleaning
[2026-03-15 07:08:04] 2026-03-15 06:08:04,737 [wrapper] apfmon messages muted
[2026-03-15 07:08:04] 2026-03-15 06:08:04,739 [wrapper] ==== wrapper stdout END ====
[2026-03-15 07:08:04] 2026-03-15 06:08:04,741 [wrapper] ==== wrapper stderr END ====
[2026-03-15 07:08:04]  *** Error codes and diagnostics ***
[2026-03-15 07:08:04]     "exeErrorCode": 0,
[2026-03-15 07:08:04]     "exeErrorDiag": "",
[2026-03-15 07:08:04]     "pilotErrorCode": 0,
[2026-03-15 07:08:04]     "pilotErrorDiag": "",
[2026-03-15 07:08:04]  *** Listing of results directory ***
[2026-03-15 07:08:04] total 403960
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc    585013 Mar 13 11:33 pilot3.tar.gz
[2026-03-15 07:08:04] -rwx------. 1 boinc boinc     36322 Mar 13 11:33 runpilot2-wrapper.sh
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc      5111 Mar 13 11:34 queuedata.json
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc       100 Mar 15 05:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-15 07:08:04] -rwxr-xr-x. 1 boinc boinc      7986 Mar 15 05:29 run_atlas
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc       105 Mar 15 05:29 job.xml
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc 211880694 Mar 15 05:29 EVNT.48967083._000787.pool.root.1
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc      6708 Mar 15 05:29 init_data.xml
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc     15845 Mar 15 05:29 start_atlas.sh
[2026-03-15 07:08:04] drwxrwx--x. 2 boinc boinc      4096 Mar 15 05:29 shared
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc    597523 Mar 15 05:29 input.tar.gz
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc         0 Mar 15 05:29 boinc_lockfile
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc      2562 Mar 15 05:29 pandaJob.out
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc   1006481 Mar 15 05:29 agis_schedconf.cvmfs.json
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc   1511579 Mar 15 05:29 agis_ddmendpoints.agis.ALL.json
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc       445 Mar 15 05:29 workernode_map.json
[2026-03-15 07:08:04] drwx------. 5 boinc boinc      4096 Mar 15 05:29 pilot3
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc 195598597 Mar 15 07:06 HITS.48967085._019536.pool.root.1
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc       529 Mar 15 07:06 boinc_task_state.xml
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc        95 Mar 15 07:06 pilot_heartbeat.json
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc      1029 Mar 15 07:07 memory_monitor_summary.json
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc    271927 Mar 15 07:07 log.48967085._019536.job.log.tgz.1
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc      6351 Mar 15 07:07 heartbeat.json
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc      8192 Mar 15 07:07 boinc_mmap_file
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc        27 Mar 15 07:07 wrapper_checkpoint.txt
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc      4901 Mar 15 07:08 pilotlog.txt
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc    844631 Mar 15 07:08 log.48967085._019536.job.log.1
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc       357 Mar 15 07:08 output.list
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc       620 Mar 15 07:08 runtime_log
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc   1136640 Mar 15 07:08 result.tar.gz
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc      9221 Mar 15 07:08 runtime_log.err
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc       662 Mar 15 07:08 p7ILDmz0EL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmODpLDmpnpFxm.diag
[2026-03-15 07:08:04] -rw-r--r--. 1 boinc boinc     21593 Mar 15 07:08 stderr.txt
[2026-03-15 07:08:04] HITS file was successfully produced:
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc 195598597 Mar 15 07:06 shared/HITS.pool.root.1
[2026-03-15 07:08:04]  *** Contents of shared directory: ***
[2026-03-15 07:08:04] total 399652
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc 211880694 Mar 15 05:29 ATLAS.root_0
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc     15845 Mar 15 05:29 start_atlas.sh
[2026-03-15 07:08:04] -rw-r--r--. 2 boinc boinc    597523 Mar 15 05:29 input.tar.gz
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc 195598597 Mar 15 07:06 HITS.pool.root.1
[2026-03-15 07:08:04] -rw-------. 1 boinc boinc   1136640 Mar 15 07:08 result.tar.gz
07:08:05 (575935): run_atlas exited; CPU time 22448.642552
07:08:05 (575935): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN