Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:08:38 (10153): wrapper (7.7.26015): starting
00:08:38 (10153): wrapper: running run_atlas (--nthreads 8)
[2026-03-14 00:08:38] Arguments: --nthreads 8
[2026-03-14 00:08:38] Threads: 8
[2026-03-14 00:08:38] Checking for CVMFS
[2026-03-14 00:08:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 00:08:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 00:08:41] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 00:08:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 00:08:42] 2.11.2.0 16377 126753 133864 157256 1 54 22384047 25165824 4784 130560 148 42008368 99.829 31245902 995 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-14 00:08:42] CVMFS is ok
[2026-03-14 00:08:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 00:08:42] Checking for apptainer binary...
[2026-03-14 00:08:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 00:08:42] Running /usr/bin/apptainer --version
[2026-03-14 00:08:42] apptainer version 1.3.2-1.el7
[2026-03-14 00:08:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 00:08:51] cg-vwn414.simple-grid.lan
[2026-03-14 00:08:51] apptainer works
[2026-03-14 00:08:51] Set ATHENA_PROC_NUMBER=8
[2026-03-14 00:08:51] Set ATHENA_CORE_NUMBER=8
[2026-03-14 00:08:52] Starting ATLAS job with PandaID=7053289813
[2026-03-14 00:08:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 05:16:29]  *** The last 200 lines of the pilot log: ***
[2026-03-14 05:16:29] 2026-03-14 04:15:20,417 | INFO     | total number of processed events: 400 (read)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,419 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7053289813/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,420 | INFO     | extracted standard info from prmon json
[2026-03-14 05:16:29] 2026-03-14 04:15:20,420 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 05:16:29] 2026-03-14 04:15:20,421 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 05:16:29] 2026-03-14 04:15:20,421 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 05:16:29] 2026-03-14 04:15:20,421 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 05:16:29] 2026-03-14 04:15:20,427 | INFO     | fitting pss+swap vs Time
[2026-03-14 05:16:29] 2026-03-14 04:15:20,428 | INFO     | sum of square deviations: 7799669962.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,431 | INFO     | sum of deviations: 59783130275.999985
[2026-03-14 05:16:29] 2026-03-14 04:15:20,431 | INFO     | mean x: 1773452788.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,431 | INFO     | mean y: 2463636.8839590442
[2026-03-14 05:16:29] 2026-03-14 04:15:20,432 | INFO     | intersect: -13590747304.076544
[2026-03-14 05:16:29] 2026-03-14 04:15:20,436 | INFO     | chi2: 7.321829178430881
[2026-03-14 05:16:29] 2026-03-14 04:15:20,437 | INFO     | sum of square deviations: 7407141672.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,440 | INFO     | sum of deviations: 78118962316.49998
[2026-03-14 05:16:29] 2026-03-14 04:15:20,440 | INFO     | mean x: 1773452635.5
[2026-03-14 05:16:29] 2026-03-14 04:15:20,440 | INFO     | mean y: 2470656.545138889
[2026-03-14 05:16:29] 2026-03-14 04:15:20,441 | INFO     | intersect: -18701138068.31875
[2026-03-14 05:16:29] 2026-03-14 04:15:20,441 | INFO     | chi2: 6.603689341922053
[2026-03-14 05:16:29] 2026-03-14 04:15:20,441 | INFO     | current chi2=6.603689341922053 (change=9.808202554415926 %)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,441 | INFO     | right removable region: 287
[2026-03-14 05:16:29] 2026-03-14 04:15:20,442 | INFO     | sum of square deviations: 7407141672.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,445 | INFO     | sum of deviations: -42214515731.5
[2026-03-14 05:16:29] 2026-03-14 04:15:20,445 | INFO     | mean x: 1773452940.5
[2026-03-14 05:16:29] 2026-03-14 04:15:20,445 | INFO     | mean y: 2503239.607638889
[2026-03-14 05:16:29] 2026-03-14 04:15:20,445 | INFO     | intersect: 10109702530.639668
[2026-03-14 05:16:29] 2026-03-14 04:15:20,446 | INFO     | chi2: 2.557932371587155
[2026-03-14 05:16:29] 2026-03-14 04:15:20,446 | INFO     | current chi2=2.557932371587155 (change=65.06429869843893 %)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,446 | INFO     | sum of square deviations: 7028008982.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,449 | INFO     | sum of deviations: -93414230935.00003
[2026-03-14 05:16:29] 2026-03-14 04:15:20,449 | INFO     | mean x: 1773453093.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,449 | INFO     | mean y: 2523728.7597173145
[2026-03-14 05:16:29] 2026-03-14 04:15:20,450 | INFO     | intersect: 23574741295.0992
[2026-03-14 05:16:29] 2026-03-14 04:15:20,450 | INFO     | chi2: 1.0655205074253316
[2026-03-14 05:16:29] 2026-03-14 04:15:20,450 | INFO     | current chi2=1.0655205074253316 (change=58.34446136024333 %)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,451 | INFO     | sum of square deviations: 6662039329.5
[2026-03-14 05:16:29] 2026-03-14 04:15:20,453 | INFO     | sum of deviations: -94682421240.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,453 | INFO     | mean x: 1773453245.5
[2026-03-14 05:16:29] 2026-03-14 04:15:20,454 | INFO     | mean y: 2524235.2661870504
[2026-03-14 05:16:29] 2026-03-14 04:15:20,454 | INFO     | intersect: 25207245933.070766
[2026-03-14 05:16:29] 2026-03-14 04:15:20,454 | INFO     | chi2: 1.0408856275281504
[2026-03-14 05:16:29] 2026-03-14 04:15:20,454 | INFO     | current chi2=1.0408856275281504 (change=2.312004295131551 %)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,455 | INFO     | left removable region: 30
[2026-03-14 05:16:29] 2026-03-14 04:15:20,460 | INFO     | sum of square deviations: 5263458688.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,463 | INFO     | sum of deviations: -49534286767.99999
[2026-03-14 05:16:29] 2026-03-14 04:15:20,463 | INFO     | mean x: 1773453520.0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,463 | INFO     | mean y: 2521168.7509727627
[2026-03-14 05:16:29] 2026-03-14 04:15:20,463 | INFO     | intersect: 16692450820.840418
[2026-03-14 05:16:29] 2026-03-14 04:15:20,464 | INFO     | chi2: 0.21857956538232967
[2026-03-14 05:16:29] 2026-03-14 04:15:20,464 | INFO     | current memory leak: -9.41 B/s (using 257 data points, chi2=0.22)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | ..............................
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . Timing measurements:
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . get job = 0 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . initial setup = 104 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . payload setup = 129 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . stage-in = 0 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . payload execution = 17946 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,465 | INFO     | . stage-out = 3 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,466 | INFO     | . log creation = 1 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,466 | INFO     | ..............................
[2026-03-14 05:16:29] 2026-03-14 04:15:20,603 | INFO     | 
[2026-03-14 05:16:29] 2026-03-14 04:15:20,603 | INFO     | job summary report
[2026-03-14 05:16:29] 2026-03-14 04:15:20,603 | INFO     | --------------------------------------------------
[2026-03-14 05:16:29] 2026-03-14 04:15:20,603 | INFO     | PanDA job id: 7053289813
[2026-03-14 05:16:29] 2026-03-14 04:15:20,604 | INFO     | task id: 48967085
[2026-03-14 05:16:29] 2026-03-14 04:15:20,604 | INFO     | errors: (none)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | pilot state: finished 
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | transexitcode: 0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | exeerrorcode: 0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | exeerrordiag: 
[2026-03-14 05:16:29] 2026-03-14 04:15:20,611 | INFO     | exitcode: 0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | exitmsg: OK
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | cpuconsumptiontime: 69606 s
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | nevents: 400
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | neventsw: 0
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | pid: 18712
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | pgrp: 18712
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | corecount: 8
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | event service: False
[2026-03-14 05:16:29] 2026-03-14 04:15:20,612 | INFO     | sizes: {0: 2279150, 1: 2280208, 2: 2280296, 18080: 2312540, 18085: 2321538, 18088: 2321594, 18091: 2321916}
[2026-03-14 05:16:29] 2026-03-14 04:15:20,613 | INFO     | --------------------------------------------------
[2026-03-14 05:16:29] 2026-03-14 04:15:20,613 | INFO     | 
[2026-03-14 05:16:29] 2026-03-14 04:15:20,613 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-03-14 05:16:29] 2026-03-14 04:15:20,811 | INFO     | time since job start (18093s) is within the limit (345600.0s)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,837 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 05:16:29] 2026-03-14 04:15:20,838 | INFO     | job 7053289813 has completed (purged errors)
[2026-03-14 05:16:29] 2026-03-14 04:15:20,838 | INFO     | overall cleanup function is called
[2026-03-14 05:16:29] 2026-03-14 04:15:21,845 | INFO     | --- collectZombieJob: --- 10, [18712]
[2026-03-14 05:16:29] 2026-03-14 04:15:21,845 | INFO     | zombie collector waiting for pid 18712
[2026-03-14 05:16:29] 2026-03-14 04:15:21,845 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 05:16:29] 2026-03-14 04:15:21,845 | INFO     | collected zombie processes
[2026-03-14 05:16:29] 2026-03-14 04:15:21,846 | INFO     | will attempt to kill all subprocesses of pid=18712
[2026-03-14 05:16:29] 2026-03-14 04:15:21,959 | INFO     | process IDs to be killed: [18712] (in reverse order)
[2026-03-14 05:16:29] 2026-03-14 04:15:22,145 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 05:16:29] 2026-03-14 04:15:22,145 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 05:16:29] 2026-03-14 04:15:22,148 | INFO     | did not find any defunct processes belonging to 18712
[2026-03-14 05:16:29] 2026-03-14 04:15:22,151 | INFO     | did not find any defunct processes belonging to 18712
[2026-03-14 05:16:29] 2026-03-14 04:15:22,152 | INFO     | ready for new job
[2026-03-14 05:16:29] 2026-03-14 04:15:22,152 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 05:16:29] 2026-03-14 04:15:22,154 | INFO     | **************************************
[2026-03-14 05:16:29] 2026-03-14 04:15:22,154 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 05:16:29] 2026-03-14 04:15:22,154 | INFO     | **************************************
[2026-03-14 05:16:29] 2026-03-14 04:15:22,155 | INFO     | 
[2026-03-14 05:16:29] 2026-03-14 04:15:22,155 | INFO     | pilot is running in a VM
[2026-03-14 05:16:29] 2026-03-14 04:15:22,155 | INFO     | architecture information:
[2026-03-14 05:16:29] 2026-03-14 04:15:22,156 | INFO     | executing command: cat /etc/os-release
[2026-03-14 05:16:29] 2026-03-14 04:15:22,439 | INFO     | cat /etc/os-release:
[2026-03-14 05:16:29] NAME="CentOS Linux"
[2026-03-14 05:16:29] VERSION="7 (Core)"
[2026-03-14 05:16:29] ID="centos"
[2026-03-14 05:16:29] ID_LIKE="rhel fedora"
[2026-03-14 05:16:29] VERSION_ID="7"
[2026-03-14 05:16:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 05:16:29] ANSI_COLOR="0;31"
[2026-03-14 05:16:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 05:16:29] HOME_URL="https://www.centos.org/"
[2026-03-14 05:16:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 05:16:29] 
[2026-03-14 05:16:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 05:16:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 05:16:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 05:16:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 05:16:29] 
[2026-03-14 05:16:29] 2026-03-14 04:15:22,440 | INFO     | **************************************
[2026-03-14 05:16:29] 2026-03-14 04:15:22,943 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-03-14 05:16:29] 2026-03-14 04:15:23,232 | INFO     | sufficient remaining disk space (496353935360 B)
[2026-03-14 05:16:29] 2026-03-14 04:15:23,232 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 05:16:29] 2026-03-14 04:15:23,232 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 05:16:29] 2026-03-14 04:15:23,232 | INFO     | update_server=False
[2026-03-14 05:16:29] 2026-03-14 04:15:23,232 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 05:16:29] 2026-03-14 04:15:23,237 | INFO     | all payload control threads have been joined
[2026-03-14 05:16:29] 2026-03-14 04:15:23,239 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 05:16:29] 2026-03-14 04:15:23,263 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 05:16:29] 2026-03-14 04:15:23,433 | INFO     | all data control threads have been joined
[2026-03-14 05:16:29] 2026-03-14 04:15:24,133 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 05:16:29] 2026-03-14 04:15:24,133 | INFO     | aborting loop
[2026-03-14 05:16:29] 2026-03-14 04:15:24,238 | INFO     | [job] retrieve thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,243 | INFO     | [payload] control thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,354 | INFO     | [job] validate thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,439 | INFO     | [data] control thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,802 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,830 | INFO     | [payload] validate_post thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:24,834 | INFO     | all job control threads have been joined
[2026-03-14 05:16:29] 2026-03-14 04:15:24,859 | INFO     | [data] copytool_in thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,139 | INFO     | [job] job monitor thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,246 | INFO     | [data] copytool_out thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,330 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,362 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,377 | INFO     | [payload] failed_post thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,611 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:25,620 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 05:16:29] 2026-03-14 04:15:25,839 | INFO     | [job] control thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:26,626 | INFO     | [job] queue monitor thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:27,272 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 05:16:29] 2026-03-14 04:15:52,828 | INFO     | 18201s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-03-14 05:16:29] 2026-03-14 04:15:53,973 | INFO     | PID=14214 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-14 05:16:29] 2026-03-14 04:15:53,973 | INFO     | .. there are 9 such processes running
[2026-03-14 05:16:29] 2026-03-14 04:15:53,973 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 05:16:29] 2026-03-14 04:15:53,973 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 05:16:29] 2026-03-14 04:15:53,973 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 05:16:29] 2026-03-14 04:16:17,297 | INFO     | [monitor] cgroup control has ended
[2026-03-14 05:16:29] 2026-03-14 04:16:19,242 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139647282669376)>', '<ExcThread(monitor, started 139646616983296)>']
[2026-03-14 05:16:29] 2026-03-14 04:16:20,130 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 05:16:29] 2026-03-14 04:16:20,130 | INFO     | [monitor] control thread has ended
[2026-03-14 05:16:29] 2026-03-14 04:16:24,268 | INFO     | all workflow threads have been joined
[2026-03-14 05:16:29] 2026-03-14 04:16:24,268 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 05:16:29] 2026-03-14 04:16:24,268 | INFO     | traces error code: 0
[2026-03-14 05:16:29] 2026-03-14 04:16:24,269 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 05:16:29] 2026-03-14 04:16:24,728 [wrapper] ==== pilot stdout END ====
[2026-03-14 05:16:29] 2026-03-14 04:16:24,843 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 05:16:29] 2026-03-14 04:16:24,939 [wrapper] pilotpid: 14214
[2026-03-14 05:16:29] 2026-03-14 04:16:25,035 [wrapper] Pilot exit status: 0
[2026-03-14 05:16:29] 2026-03-14 04:16:25,444 [wrapper] pandaids: 7053289813
[2026-03-14 05:16:29] 2026-03-14 04:16:26,424 [wrapper] cleanup supervisor_pilot 27759 14215
[2026-03-14 05:16:29] 2026-03-14 04:16:26,492 [wrapper] Test setup, not cleaning
[2026-03-14 05:16:29] 2026-03-14 04:16:26,569 [wrapper] apfmon messages muted
[2026-03-14 05:16:29] 2026-03-14 04:16:26,648 [wrapper] ==== wrapper stdout END ====
[2026-03-14 05:16:29] 2026-03-14 04:16:26,703 [wrapper] ==== wrapper stderr END ====
[2026-03-14 05:16:29]  *** Error codes and diagnostics ***
[2026-03-14 05:16:29]     "exeErrorCode": 0,
[2026-03-14 05:16:29]     "exeErrorDiag": "",
[2026-03-14 05:16:29]     "pilotErrorCode": 0,
[2026-03-14 05:16:29]     "pilotErrorDiag": "",
[2026-03-14 05:16:29]  *** Listing of results directory ***
[2026-03-14 05:16:29] total 415280
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc      5111 Mar 13 11:33 queuedata.json
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc    585013 Mar 13 11:33 pilot3.tar.gz
[2026-03-14 05:16:29] -rwx------. 1 boinc boinc     36322 Mar 13 11:33 runpilot2-wrapper.sh
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc       100 Mar 14 00:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 05:16:29] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 00:08 run_atlas
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc       105 Mar 14 00:08 job.xml
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc      6391 Mar 14 00:08 init_data.xml
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc 213750993 Mar 14 00:08 EVNT.48967083._000760.pool.root.1
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc     15845 Mar 14 00:08 start_atlas.sh
[2026-03-14 05:16:29] drwxrwx--x. 2 boinc boinc        68 Mar 14 00:08 shared
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc    597521 Mar 14 00:08 input.tar.gz
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc         0 Mar 14 00:08 boinc_lockfile
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc      2562 Mar 14 00:08 pandaJob.out
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc       415 Mar 14 00:13 workernode_map.json
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc   1006717 Mar 14 00:13 agis_schedconf.cvmfs.json
[2026-03-14 05:16:29] drwx------. 5 boinc boinc      4096 Mar 14 00:13 pilot3
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc 201545449 Mar 14 05:13 HITS.48967085._018961.pool.root.1
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc       530 Mar 14 05:14 boinc_task_state.xml
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc      1012 Mar 14 05:15 memory_monitor_summary.json
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc   1511579 Mar 14 05:15 agis_ddmendpoints.agis.ALL.json
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc    501356 Mar 14 05:15 log.48967085._018961.job.log.tgz.1
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc        95 Mar 14 05:15 pilot_heartbeat.json
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc      6318 Mar 14 05:15 heartbeat.json
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc      8192 Mar 14 05:16 boinc_mmap_file
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc        28 Mar 14 05:16 wrapper_checkpoint.txt
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc      4996 Mar 14 05:16 pilotlog.txt
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc   2513931 Mar 14 05:16 log.48967085._018961.job.log.1
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc       357 Mar 14 05:16 output.list
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc       620 Mar 14 05:16 runtime_log
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc   3031040 Mar 14 05:16 result.tar.gz
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc      8816 Mar 14 05:16 runtime_log.err
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc       656 Mar 14 05:16 2HsLDmg0EL9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmv9oLDmzRp2jm.diag
[2026-03-14 05:16:29] -rw-r--r--. 1 boinc boinc     20740 Mar 14 05:16 stderr.txt
[2026-03-14 05:16:29] HITS file was successfully produced:
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc 201545449 Mar 14 05:13 shared/HITS.pool.root.1
[2026-03-14 05:16:29]  *** Contents of shared directory: ***
[2026-03-14 05:16:29] total 409128
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc 213750993 Mar 14 00:08 ATLAS.root_0
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc     15845 Mar 14 00:08 start_atlas.sh
[2026-03-14 05:16:29] -rw-r--r--. 2 boinc boinc    597521 Mar 14 00:08 input.tar.gz
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc 201545449 Mar 14 05:13 HITS.pool.root.1
[2026-03-14 05:16:29] -rw-------. 1 boinc boinc   3031040 Mar 14 05:16 result.tar.gz
05:16:30 (10153): run_atlas exited; CPU time 69882.070346
05:16:30 (10153): called boinc_finish(0)

</stderr_txt>
]]>

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