Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:35:33 (3336794): wrapper (7.7.26015): starting
18:35:33 (3336794): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 18:35:33] Arguments: --nthreads 3
[2026-03-13 18:35:33] Threads: 3
[2026-03-13 18:35:33] Checking for CVMFS
[2026-03-13 18:35:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 18:35:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 18:35:33] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 18:35:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 18:35:33] 2.9.2.0 38142 23111 99364 157249 3 50 30485110 36864001 0 130560 0 9249639 99.982 881427 13143 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 18:35:33] CVMFS is ok
[2026-03-13 18:35:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 18:35:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 18:35:33] Further information can be found at the LHC@home message board.
[2026-03-13 18:35:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 18:35:33] Checking for apptainer binary...
[2026-03-13 18:35:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 18:35:33] Running /usr/bin/apptainer --version
[2026-03-13 18:35:33] apptainer version 1.4.1-1.1
[2026-03-13 18:35:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 18:35:33] thA312a
[2026-03-13 18:35:33] apptainer works
[2026-03-13 18:35:33] Set ATHENA_PROC_NUMBER=3
[2026-03-13 18:35:33] Set ATHENA_CORE_NUMBER=3
[2026-03-13 18:35:33] Starting ATLAS job with PandaID=7052782057
[2026-03-13 18:35:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 20:10:57]  *** The last 200 lines of the pilot log: ***
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,080 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 20:10:57] 2026-03-13 19:10:18,081 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,081 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 20:10:57] 2026-03-13 19:10:18,081 | INFO     | job 7052782057 has completed (purged errors)
[2026-03-13 20:10:57] 2026-03-13 19:10:18,081 | INFO     | overall cleanup function is called
[2026-03-13 20:10:57] 2026-03-13 19:10:19,087 | INFO     | --- collectZombieJob: --- 10, [3345273]
[2026-03-13 20:10:57] 2026-03-13 19:10:19,088 | INFO     | zombie collector waiting for pid 3345273
[2026-03-13 20:10:57] 2026-03-13 19:10:19,088 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 20:10:57] 2026-03-13 19:10:19,088 | INFO     | collected zombie processes
[2026-03-13 20:10:57] 2026-03-13 19:10:19,088 | INFO     | will attempt to kill all subprocesses of pid=3345273
[2026-03-13 20:10:57] 2026-03-13 19:10:19,128 | INFO     | process IDs to be killed: [3345273] (in reverse order)
[2026-03-13 20:10:57] 2026-03-13 19:10:19,153 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 20:10:57] 2026-03-13 19:10:19,153 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 20:10:57] 2026-03-13 19:10:19,155 | INFO     | did not find any defunct processes belonging to 3345273
[2026-03-13 20:10:57] 2026-03-13 19:10:19,156 | INFO     | did not find any defunct processes belonging to 3345273
[2026-03-13 20:10:57] 2026-03-13 19:10:19,156 | INFO     | ready for new job
[2026-03-13 20:10:57] 2026-03-13 19:10:19,156 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 20:10:57] 2026-03-13 19:10:19,156 | INFO     | **************************************
[2026-03-13 20:10:57] 2026-03-13 19:10:19,156 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 20:10:57] 2026-03-13 19:10:19,157 | INFO     | **************************************
[2026-03-13 20:10:57] 2026-03-13 19:10:19,157 | INFO     | 
[2026-03-13 20:10:57] 2026-03-13 19:10:19,157 | INFO     | architecture information:
[2026-03-13 20:10:57] 2026-03-13 19:10:19,157 | INFO     | executing command: cat /etc/os-release
[2026-03-13 20:10:57] 2026-03-13 19:10:19,166 | INFO     | cat /etc/os-release:
[2026-03-13 20:10:57] NAME="CentOS Linux"
[2026-03-13 20:10:57] VERSION="7 (Core)"
[2026-03-13 20:10:57] ID="centos"
[2026-03-13 20:10:57] ID_LIKE="rhel fedora"
[2026-03-13 20:10:57] VERSION_ID="7"
[2026-03-13 20:10:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 20:10:57] ANSI_COLOR="0;31"
[2026-03-13 20:10:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 20:10:57] HOME_URL="https://www.centos.org/"
[2026-03-13 20:10:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 20:10:57] 
[2026-03-13 20:10:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 20:10:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 20:10:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 20:10:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 20:10:57] 
[2026-03-13 20:10:57] 2026-03-13 19:10:19,166 | INFO     | **************************************
[2026-03-13 20:10:57] 2026-03-13 19:10:19,670 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-13 20:10:57] 2026-03-13 19:10:19,682 | INFO     | sufficient remaining disk space (272745103360 B)
[2026-03-13 20:10:57] 2026-03-13 19:10:19,682 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 20:10:57] 2026-03-13 19:10:19,682 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 20:10:57] 2026-03-13 19:10:19,682 | INFO     | update_server=False
[2026-03-13 20:10:57] 2026-03-13 19:10:19,682 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 20:10:57] 2026-03-13 19:10:19,683 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 20:10:57] 2026-03-13 19:10:19,683 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 20:10:57] 2026-03-13 19:10:19,683 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 20:10:57] 2026-03-13 19:10:19,683 | INFO     | aborting loop
[2026-03-13 20:10:57] 2026-03-13 19:10:19,804 | INFO     | job.realtimelogging is not enabled
[2026-03-13 20:10:57] 2026-03-13 19:10:20,609 | INFO     | all payload control threads have been joined
[2026-03-13 20:10:57] 2026-03-13 19:10:20,631 | INFO     | all data control threads have been joined
[2026-03-13 20:10:57] 2026-03-13 19:10:20,684 | INFO     | [job] job monitor thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,688 | INFO     | [job] retrieve thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,688 | INFO     | [job] queue monitor thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,710 | INFO     | [payload] validate_post thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,724 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,810 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,855 | INFO     | [data] copytool_in thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:20,950 | INFO     | all job control threads have been joined
[2026-03-13 20:10:57] 2026-03-13 19:10:21,343 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 20:10:57] 2026-03-13 19:10:21,344 | INFO     | [payload] failed_post thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:21,615 | INFO     | [payload] control thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:21,637 | INFO     | [data] control thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:21,689 | INFO     | [data] copytool_out thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:21,787 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:21,955 | INFO     | [job] control thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:22,091 | INFO     | [job] validate thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:22,116 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:25,350 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 20:10:57] 2026-03-13 19:10:49,375 | INFO     | PID=3340841 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-13 20:10:57] 2026-03-13 19:10:49,375 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 20:10:57] 2026-03-13 19:10:49,375 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 20:10:57] 2026-03-13 19:10:49,375 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 20:10:57] 2026-03-13 19:10:50,279 | INFO     | [monitor] cgroup control has ended
[2026-03-13 20:10:57] 2026-03-13 19:10:52,079 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140424650790720)>', '<ExcThread(monitor, started 140423880238848)>']
[2026-03-13 20:10:57] 2026-03-13 19:10:52,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 20:10:57] 2026-03-13 19:10:52,391 | INFO     | [monitor] control thread has ended
[2026-03-13 20:10:57] 2026-03-13 19:10:57,104 | INFO     | all workflow threads have been joined
[2026-03-13 20:10:57] 2026-03-13 19:10:57,105 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 20:10:57] 2026-03-13 19:10:57,105 | INFO     | traces error code: 0
[2026-03-13 20:10:57] 2026-03-13 19:10:57,105 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 20:10:57] 2026-03-13 19:10:57,156 [wrapper] ==== pilot stdout END ====
[2026-03-13 20:10:57] 2026-03-13 19:10:57,159 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 20:10:57] 2026-03-13 19:10:57,161 [wrapper] pilotpid: 3340841
[2026-03-13 20:10:57] 2026-03-13 19:10:57,164 [wrapper] Pilot exit status: 0
[2026-03-13 20:10:57] 2026-03-13 19:10:57,172 [wrapper] pandaids: 7052782057
[2026-03-13 20:10:57] 2026-03-13 19:10:57,189 [wrapper] cleanup supervisor_pilot 3350569 3340842
[2026-03-13 20:10:57] 2026-03-13 19:10:57,191 [wrapper] Test setup, not cleaning
[2026-03-13 20:10:57] 2026-03-13 19:10:57,194 [wrapper] apfmon messages muted
[2026-03-13 20:10:57] 2026-03-13 19:10:57,196 [wrapper] ==== wrapper stdout END ====
[2026-03-13 20:10:57] 2026-03-13 19:10:57,199 [wrapper] ==== wrapper stderr END ====
[2026-03-13 20:10:57]  *** Error codes and diagnostics ***
[2026-03-13 20:10:57]     "exeErrorCode": 0,
[2026-03-13 20:10:57]     "exeErrorDiag": "",
[2026-03-13 20:10:57]     "pilotErrorCode": 0,
[2026-03-13 20:10:57]     "pilotErrorDiag": "",
[2026-03-13 20:10:57]  *** Listing of results directory ***
[2026-03-13 20:10:57] total 408664
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc      5111 Mar 13 03:05 queuedata.json
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc    585013 Mar 13 03:05 pilot3.tar.gz
[2026-03-13 20:10:57] -rwx------ 1 boinc boinc     36322 Mar 13 03:05 runpilot2-wrapper.sh
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc       100 Mar 13 18:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 20:10:57] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 18:35 run_atlas
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc       105 Mar 13 18:35 job.xml
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc 211773395 Mar 13 18:35 EVNT.48967083._000690.pool.root.1
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc    597525 Mar 13 18:35 input.tar.gz
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc     15845 Mar 13 18:35 start_atlas.sh
[2026-03-13 20:10:57] drwxrwx--x 2 boinc boinc      4096 Mar 13 18:35 shared
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc         0 Mar 13 18:35 boinc_setup_complete
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc      6446 Mar 13 18:35 init_data.xml
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc         0 Mar 13 18:35 boinc_lockfile
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc      2571 Mar 13 18:35 pandaJob.out
[2026-03-13 20:10:57] -rw------- 1 boinc boinc   1006589 Mar 13 18:35 agis_schedconf.cvmfs.json
[2026-03-13 20:10:57] -rw------- 1 boinc boinc   1511579 Mar 13 18:35 agis_ddmendpoints.agis.ALL.json
[2026-03-13 20:10:57] -rw------- 1 boinc boinc       424 Mar 13 18:35 workernode_map.json
[2026-03-13 20:10:57] drwx------ 5 boinc boinc      4096 Mar 13 18:35 pilot3
[2026-03-13 20:10:57] -rw------- 1 boinc boinc 200593260 Mar 13 20:09 HITS.48967085._016372.pool.root.1
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc       529 Mar 13 20:10 boinc_task_state.xml
[2026-03-13 20:10:57] -rw------- 1 boinc boinc        95 Mar 13 20:10 pilot_heartbeat.json
[2026-03-13 20:10:57] -rw------- 1 boinc boinc      1028 Mar 13 20:10 memory_monitor_summary.json
[2026-03-13 20:10:57] -rw------- 1 boinc boinc    266296 Mar 13 20:10 log.48967085._016372.job.log.tgz.1
[2026-03-13 20:10:57] -rw------- 1 boinc boinc      6301 Mar 13 20:10 heartbeat.json
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc        27 Mar 13 20:10 wrapper_checkpoint.txt
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc      8192 Mar 13 20:10 boinc_mmap_file
[2026-03-13 20:10:57] -rw------- 1 boinc boinc      4820 Mar 13 20:10 pilotlog.txt
[2026-03-13 20:10:57] -rw------- 1 boinc boinc    826127 Mar 13 20:10 log.48967085._016372.job.log.1
[2026-03-13 20:10:57] -rw------- 1 boinc boinc       357 Mar 13 20:10 output.list
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc       620 Mar 13 20:10 runtime_log
[2026-03-13 20:10:57] -rw------- 1 boinc boinc   1105920 Mar 13 20:10 result.tar.gz
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc      8901 Mar 13 20:10 runtime_log.err
[2026-03-13 20:10:57] -rw------- 1 boinc boinc       658 Mar 13 20:10 Ko0MDmc56K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmujlLDmlxc4Fo.diag
[2026-03-13 20:10:57] -rw-r--r-- 1 boinc boinc     12232 Mar 13 20:10 stderr.txt
[2026-03-13 20:10:57] HITS file was successfully produced:
[2026-03-13 20:10:57] -rw------- 1 boinc boinc 200593260 Mar 13 20:09 shared/HITS.pool.root.1
[2026-03-13 20:10:57]  *** Contents of shared directory: ***
[2026-03-13 20:10:57] total 404392
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc 211773395 Mar 13 18:35 ATLAS.root_0
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc    597525 Mar 13 18:35 input.tar.gz
[2026-03-13 20:10:57] -rw-r--r-- 2 boinc boinc     15845 Mar 13 18:35 start_atlas.sh
[2026-03-13 20:10:57] -rw------- 1 boinc boinc 200593260 Mar 13 20:09 HITS.pool.root.1
[2026-03-13 20:10:57] -rw------- 1 boinc boinc   1105920 Mar 13 20:10 result.tar.gz
20:10:58 (3336794): run_atlas exited; CPU time 16298.753901
20:10:58 (3336794): called boinc_finish(0)

</stderr_txt>
]]>

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