Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:35:22 (2765550): wrapper (7.7.26015): starting
15:35:22 (2765550): wrapper: running run_atlas (--nthreads 4)
[2026-03-14 15:35:22] Arguments: --nthreads 4
[2026-03-14 15:35:22] Threads: 4
[2026-03-14 15:35:22] Checking for CVMFS
[2026-03-14 15:35:22] No cvmfs_config command found, will try listing directly
[2026-03-14 15:35:22] CVMFS is ok
[2026-03-14 15:35:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-14 15:35:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-14 15:35:22] Further information can be found at the LHC@home message board.
[2026-03-14 15:35:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 15:35:22] Checking for apptainer binary...
[2026-03-14 15:35:22] which: no apptainer in ((null))
[2026-03-14 15:35:22] apptainer is not installed, using version from CVMFS
[2026-03-14 15:35:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 15:35:22] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot104/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut29.grid.cesnet.cz
[2026-03-14 15:35:22] apptainer works
[2026-03-14 15:35:22] Set ATHENA_PROC_NUMBER=4
[2026-03-14 15:35:22] Set ATHENA_CORE_NUMBER=4
[2026-03-14 15:35:22] Starting ATLAS job with PandaID=7043879354
[2026-03-14 15:35:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot104/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 16:54:49]  *** The last 200 lines of the pilot log: ***
[2026-03-14 16:54:49]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-03-14 16:54:49]  is_altstaged=None
[2026-03-14 16:54:49]  is_tar=False
[2026-03-14 16:54:49]  lfn=log.48955010._029049.job.log.tgz.1
[2026-03-14 16:54:49]  mtime=0
[2026-03-14 16:54:49]  protocol_id=None
[2026-03-14 16:54:49]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-03-14 16:54:49]  replicas=None
[2026-03-14 16:54:49]  scope=mc23_13p6TeV
[2026-03-14 16:54:49]  status=None
[2026-03-14 16:54:49]  status_code=0
[2026-03-14 16:54:49]  storage_token=
[2026-03-14 16:54:49]  surl=/var/lib/boinc/var/slot104/slots/1/PanDA_Pilot-7043879354/log.48955010._029049.job.log.tgz.1
[2026-03-14 16:54:49]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/80/log.48955010._029049.job.log.tgz.1
[2026-03-14 16:54:49]  workdir=None
[2026-03-14 16:54:49] ]
[2026-03-14 16:54:49] 2026-03-14 15:53:42,988 | INFO     | transferring file log.48955010._029049.job.log.tgz.1 from /var/lib/boinc/var/slot104/slots/1/PanDA_Pilot-7043879354/log.48955010._029049.job.log.tgz.1 to /var/lib/
[2026-03-14 16:54:49] 2026-03-14 15:53:42,989 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot104/slots/1/PanDA_Pilot-7043879354/log.48955010._029049.job.log.tgz.1 /var/lib/boinc/var/slot104/slots/1/
[2026-03-14 16:54:49] 2026-03-14 15:53:43,002 | INFO     | adding to output.list: log.48955010._029049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/80/log.48955010._029049.job.log.tg
[2026-03-14 16:54:49] 2026-03-14 15:53:43,002 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-03-14 16:54:49] 2026-03-14 15:53:43,002 | INFO     | summary of transferred files:
[2026-03-14 16:54:49] 2026-03-14 15:53:43,002 | INFO     |  -- lfn=log.48955010._029049.job.log.tgz.1, status_code=0, status=transferred
[2026-03-14 16:54:49] 2026-03-14 15:53:43,003 | INFO     | stage-out finished correctly
[2026-03-14 16:54:49] 2026-03-14 15:53:43,373 | INFO     | number of running child processes to parent process 2776296: 1
[2026-03-14 16:54:49] 2026-03-14 15:53:43,373 | INFO     | maximum number of monitored processes: 6
[2026-03-14 16:54:49] 2026-03-14 15:53:44,223 | INFO     | time since job start (4688s) is within the limit (345600.0s)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,876 | INFO     | monitor loop #337: job 0:7043879354 is in state 'finished'
[2026-03-14 16:54:49] 2026-03-14 15:53:45,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,879 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-03-14 16:54:49] 2026-03-14 15:53:45,930 | INFO     | job 7043879354 has state=finished
[2026-03-14 16:54:49] 2026-03-14 15:53:45,930 | INFO     | preparing for final server update for job 7043879354 in state='finished'
[2026-03-14 16:54:49] 2026-03-14 15:53:45,930 | INFO     | reading metadata from: /var/lib/boinc/var/slot104/slots/1/PanDA_Pilot-7043879354/jobReport.json
[2026-03-14 16:54:49] 2026-03-14 15:53:45,932 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot104/slots/1/workernode_map.json
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | INFO     | this job has now completed (state=finished)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | INFO     | log transfer has been attempted: DONE
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | INFO     | job 7043879354 has finished - writing final server update
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2592554/.job.ad'
[2026-03-14 16:54:49] 2026-03-14 15:53:45,933 | INFO     | total number of processed events: 400 (read)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,951 | INFO     | using path: /var/lib/boinc/var/slot104/slots/1/PanDA_Pilot-7043879354/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,951 | INFO     | extracted standard info from prmon json
[2026-03-14 16:54:49] 2026-03-14 15:53:45,951 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 16:54:49] 2026-03-14 15:53:45,951 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 16:54:49] 2026-03-14 15:53:45,952 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 16:54:49] 2026-03-14 15:53:45,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | fitting pss+swap vs Time
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | sum of square deviations: 106336877.5
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | sum of deviations: -382749776.5
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | mean x: 1773501366.5
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | mean y: 2320505.9285714286
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | intersect: 6385874994.354467
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | chi2: 0.00040849518653190297
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | current memory leak: -3.60 B/s (using 70 data points, chi2=0.00)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,953 | INFO     | could have reported an average CPU frequency of 3567 MHz (6 samples)
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | ..............................
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . Timing measurements:
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . get job = 0 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . initial setup = 5 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . payload setup = 5 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . stage-in = 0 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . payload execution = 4666 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . stage-out = 0 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | . log creation = 0 s
[2026-03-14 16:54:49] 2026-03-14 15:53:45,954 | INFO     | ..............................
[2026-03-14 16:54:49] 2026-03-14 15:53:46,002 | INFO     | 
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | job summary report
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | --------------------------------------------------
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | PanDA job id: 7043879354
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | task id: 48955010
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | errors: (none)
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | pilot state: finished 
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | transexitcode: 0
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | exeerrorcode: 0
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | exeerrordiag: 
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | exitcode: 0
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | exitmsg: OK
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | cpuconsumptiontime: 17823 s
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | nevents: 400
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | neventsw: 0
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | pid: 2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | pgrp: 2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | corecount: 4
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | event service: False
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | sizes: {0: 2280191, 11: 2280191, 4675: 2306449, 4676: 2315471, 4679: 2315721}
[2026-03-14 16:54:49] 2026-03-14 15:53:46,003 | INFO     | --------------------------------------------------
[2026-03-14 16:54:49] 2026-03-14 15:53:46,004 | INFO     | 
[2026-03-14 16:54:49] 2026-03-14 15:53:46,004 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot104/slots/1
[2026-03-14 16:54:49] 2026-03-14 15:53:46,028 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,028 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | job 7043879354 has completed (purged errors)
[2026-03-14 16:54:49] 2026-03-14 15:53:46,029 | INFO     | overall cleanup function is called
[2026-03-14 16:54:49] 2026-03-14 15:53:47,036 | INFO     | --- collectZombieJob: --- 10, [2776296]
[2026-03-14 16:54:49] 2026-03-14 15:53:47,036 | INFO     | zombie collector waiting for pid 2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:47,036 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 16:54:49] 2026-03-14 15:53:47,036 | INFO     | collected zombie processes
[2026-03-14 16:54:49] 2026-03-14 15:53:47,036 | INFO     | will attempt to kill all subprocesses of pid=2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:47,541 | INFO     | process IDs to be killed: [2776296] (in reverse order)
[2026-03-14 16:54:49] 2026-03-14 15:53:47,780 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 16:54:49] 2026-03-14 15:53:47,780 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 16:54:49] 2026-03-14 15:53:47,811 | INFO     | did not find any defunct processes belonging to 2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:47,842 | INFO     | did not find any defunct processes belonging to 2776296
[2026-03-14 16:54:49] 2026-03-14 15:53:47,842 | INFO     | ready for new job
[2026-03-14 16:54:49] 2026-03-14 15:53:47,843 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 16:54:49] 2026-03-14 15:53:47,844 | INFO     | **************************************
[2026-03-14 16:54:49] 2026-03-14 15:53:47,844 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 16:54:49] 2026-03-14 15:53:47,844 | INFO     | **************************************
[2026-03-14 16:54:49] 2026-03-14 15:53:47,844 | INFO     | 
[2026-03-14 16:54:49] 2026-03-14 15:53:47,850 | INFO     | architecture information:
[2026-03-14 16:54:49] 2026-03-14 15:53:47,850 | INFO     | executing command: cat /etc/os-release
[2026-03-14 16:54:49] 2026-03-14 15:53:47,869 | INFO     | cat /etc/os-release:
[2026-03-14 16:54:49] NAME="CentOS Linux"
[2026-03-14 16:54:49] VERSION="7 (Core)"
[2026-03-14 16:54:49] ID="centos"
[2026-03-14 16:54:49] ID_LIKE="rhel fedora"
[2026-03-14 16:54:49] VERSION_ID="7"
[2026-03-14 16:54:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 16:54:49] ANSI_COLOR="0;31"
[2026-03-14 16:54:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 16:54:49] HOME_URL="https://www.centos.org/"
[2026-03-14 16:54:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 16:54:49] 
[2026-03-14 16:54:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 16:54:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 16:54:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 16:54:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 16:54:49] 
[2026-03-14 16:54:49] 2026-03-14 15:53:47,870 | INFO     | **************************************
[2026-03-14 16:54:49] 2026-03-14 15:53:48,372 | INFO     | executing command: df -mP /var/lib/boinc/var/slot104/slots/1
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | INFO     | sufficient remaining disk space (20558381056 B)
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | INFO     | update_server=False
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 16:54:49] 2026-03-14 15:53:48,388 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 16:54:49] 2026-03-14 15:53:48,556 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 16:54:49] 2026-03-14 15:53:48,653 | INFO     | all payload control threads have been joined
[2026-03-14 16:54:49] 2026-03-14 15:53:49,007 | INFO     | all data control threads have been joined
[2026-03-14 16:54:49] 2026-03-14 15:53:49,384 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:54:49] 2026-03-14 15:53:49,384 | INFO     | aborting loop
[2026-03-14 16:54:49] 2026-03-14 15:53:49,393 | INFO     | [job] retrieve thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:49,546 | INFO     | [data] copytool_in thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:49,551 | INFO     | all job control threads have been joined
[2026-03-14 16:54:49] 2026-03-14 15:53:49,658 | INFO     | [payload] control thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:49,719 | INFO     | [payload] validate_post thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:49,816 | INFO     | [job] validate thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,012 | INFO     | [data] control thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,223 | INFO     | [payload] failed_post thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,386 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,389 | INFO     | [job] job monitor thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,556 | INFO     | [job] control thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,561 | INFO     | [data] copytool_out thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,773 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:50,866 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:51,015 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 16:54:49] 2026-03-14 15:53:52,020 | INFO     | [job] queue monitor thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:52,394 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:53:59,061 | INFO     | job.realtimelogging is not enabled
[2026-03-14 16:54:49] 2026-03-14 15:54:00,066 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 16:54:49] 2026-03-14 15:54:17,897 | INFO     | PID=2770430 has CPU usage=6.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 16:54:49] 2026-03-14 15:54:17,898 | INFO     | .. there are 48 such processes running
[2026-03-14 16:54:49] 2026-03-14 15:54:17,898 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 16:54:49] 2026-03-14 15:54:17,898 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 16:54:49] 2026-03-14 15:54:17,898 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 16:54:49] 2026-03-14 15:54:43,401 | INFO     | [monitor] cgroup control has ended
[2026-03-14 16:54:49] 2026-03-14 15:54:44,478 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22439061026624)>', '<ExcThread(monitor, started 22438823081728)>']
[2026-03-14 16:54:49] 2026-03-14 15:54:45,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 16:54:49] 2026-03-14 15:54:45,032 | INFO     | [monitor] control thread has ended
[2026-03-14 16:54:49] 2026-03-14 15:54:49,503 | INFO     | all workflow threads have been joined
[2026-03-14 16:54:49] 2026-03-14 15:54:49,503 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 16:54:49] 2026-03-14 15:54:49,503 | INFO     | traces error code: 0
[2026-03-14 16:54:49] 2026-03-14 15:54:49,503 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 16:54:49] 2026-03-14 15:54:49,625 [wrapper] ==== pilot stdout END ====
[2026-03-14 16:54:49] 2026-03-14 15:54:49,628 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 16:54:49] 2026-03-14 15:54:49,630 [wrapper] pilotpid: 2770430
[2026-03-14 16:54:49] 2026-03-14 15:54:49,633 [wrapper] Pilot exit status: 0
[2026-03-14 16:54:49] 2026-03-14 15:54:49,645 [wrapper] pandaids: 7043879354
[2026-03-14 16:54:49] 2026-03-14 15:54:49,789 [wrapper] cleanup supervisor_pilot 3482249 2770431
[2026-03-14 16:54:49] 2026-03-14 15:54:49,792 [wrapper] Test setup, not cleaning
[2026-03-14 16:54:49] 2026-03-14 15:54:49,795 [wrapper] apfmon messages muted
[2026-03-14 16:54:49] 2026-03-14 15:54:49,797 [wrapper] ==== wrapper stdout END ====
[2026-03-14 16:54:49] 2026-03-14 15:54:49,799 [wrapper] ==== wrapper stderr END ====
[2026-03-14 16:54:49]  *** Error codes and diagnostics ***
[2026-03-14 16:54:49]     "exeErrorCode": 0,
[2026-03-14 16:54:49]     "exeErrorDiag": "",
[2026-03-14 16:54:49]     "pilotErrorCode": 0,
[2026-03-14 16:54:49]     "pilotErrorDiag": "",
[2026-03-14 16:54:49]  *** Listing of results directory ***
[2026-03-14 16:54:49] total 618520
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc    585013 Mar 13 08:23 pilot3.tar.gz
[2026-03-14 16:54:49] -rwx------. 1 boinc boinc     36322 Mar 13 08:24 runpilot2-wrapper.sh
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc      5111 Mar 13 08:25 queuedata.json
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc       100 Mar 14 15:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 16:54:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 14 15:35 run_atlas
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc       105 Mar 14 15:35 job.xml
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc     15845 Mar 14 15:35 start_atlas.sh
[2026-03-14 16:54:49] drwxrwx--x. 2 boinc boinc      4096 Mar 14 15:35 shared
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc    597531 Mar 14 15:35 input.tar.gz
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc      6709 Mar 14 15:35 init_data.xml
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc 443587077 Mar 14 15:35 EVNT.46701403._001575.pool.root.1
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc         0 Mar 14 15:35 boinc_lockfile
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc      2563 Mar 14 15:35 pandaJob.out
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc   1004579 Mar 14 15:35 agis_schedconf.cvmfs.json
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc   1511579 Mar 14 15:35 agis_ddmendpoints.agis.ALL.json
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc       444 Mar 14 15:35 workernode_map.json
[2026-03-14 16:54:49] drwx------. 5 boinc boinc      4096 Mar 14 15:35 pilot3
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc 183948975 Mar 14 16:53 HITS.48955010._029049.pool.root.1
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc        95 Mar 14 16:53 pilot_heartbeat.json
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc      1044 Mar 14 16:53 memory_monitor_summary.json
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc       530 Mar 14 16:53 boinc_task_state.xml
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc    259498 Mar 14 16:53 log.48955010._029049.job.log.tgz.1
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc      6357 Mar 14 16:53 heartbeat.json
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc        27 Mar 14 16:54 wrapper_checkpoint.txt
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc      8192 Mar 14 16:54 boinc_mmap_file
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc      4902 Mar 14 16:54 pilotlog.txt
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc    686492 Mar 14 16:54 log.48955010._029049.job.log.1
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc       357 Mar 14 16:54 output.list
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc       620 Mar 14 16:54 runtime_log
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc    962560 Mar 14 16:54 result.tar.gz
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc       662 Mar 14 16:54 rzoNDmk3BL9n9Rq4apOajLDm4fhM0noT9bVooX4SDmkSmLDmR0chAo.diag
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc      9221 Mar 14 16:54 runtime_log.err
[2026-03-14 16:54:49] -rw-r--r--. 1 boinc boinc     21257 Mar 14 16:54 stderr.txt
[2026-03-14 16:54:49] HITS file was successfully produced:
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc 183948975 Mar 14 16:53 shared/HITS.pool.root.1
[2026-03-14 16:54:49]  *** Contents of shared directory: ***
[2026-03-14 16:54:49] total 614380
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc     15845 Mar 14 15:35 start_atlas.sh
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc    597531 Mar 14 15:35 input.tar.gz
[2026-03-14 16:54:49] -rw-r--r--. 2 boinc boinc 443587077 Mar 14 15:35 ATLAS.root_0
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc 183948975 Mar 14 16:53 HITS.pool.root.1
[2026-03-14 16:54:49] -rw-------. 1 boinc boinc    962560 Mar 14 16:54 result.tar.gz
16:54:51 (2765550): run_atlas exited; CPU time 18032.597371
16:54:51 (2765550): called boinc_finish(0)

</stderr_txt>
]]>

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