Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:02:34 (24402): wrapper (7.7.26015): starting
16:02:34 (24402): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 16:02:34] Arguments: --nthreads 8
[2026-03-13 16:02:34] Threads: 8
[2026-03-13 16:02:34] Checking for CVMFS
[2026-03-13 16:02:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 16:02:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 16:02:34] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 16:02:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 16:02:34] 2.11.2.0 17755 25066 101568 157242 0 119 23226996 25165825 694 130560 150 8389092 99.852 3110187 150 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 16:02:34] CVMFS is ok
[2026-03-13 16:02:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 16:02:34] Checking for apptainer binary...
[2026-03-13 16:02:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 16:02:34] Running /usr/bin/apptainer --version
[2026-03-13 16:02:34] apptainer version 1.3.2-1.el7
[2026-03-13 16:02:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 16:02:36] cg-vwn419.simple-grid.lan
[2026-03-13 16:02:36] apptainer works
[2026-03-13 16:02:36] Set ATHENA_PROC_NUMBER=8
[2026-03-13 16:02:36] Set ATHENA_CORE_NUMBER=8
[2026-03-13 16:02:36] Starting ATLAS job with PandaID=7051843035
[2026-03-13 16:02:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 21:54:49]  *** The last 200 lines of the pilot log: ***
[2026-03-13 21:54:49] 2026-03-13 20:53:46,761 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-7051843035/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,762 | INFO     | extracted standard info from prmon json
[2026-03-13 21:54:49] 2026-03-13 20:53:46,762 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 21:54:49] 2026-03-13 20:53:46,762 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 21:54:49] 2026-03-13 20:53:46,763 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 21:54:49] 2026-03-13 20:53:46,763 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 21:54:49] 2026-03-13 20:53:46,770 | INFO     | fitting pss+swap vs Time
[2026-03-13 21:54:49] 2026-03-13 20:53:46,770 | INFO     | sum of square deviations: 12733038740.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,775 | INFO     | sum of deviations: -10082870620.999996
[2026-03-13 21:54:49] 2026-03-13 20:53:46,775 | INFO     | mean x: 1773424694.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,775 | INFO     | mean y: 2550578.4231884056
[2026-03-13 21:54:49] 2026-03-13 20:53:46,775 | INFO     | intersect: 1406866713.0718534
[2026-03-13 21:54:49] 2026-03-13 20:53:46,776 | INFO     | chi2: 2.4110326759759237
[2026-03-13 21:54:49] 2026-03-13 20:53:46,777 | INFO     | sum of square deviations: 12187409905.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,780 | INFO     | sum of deviations: 13090839638.499998
[2026-03-13 21:54:49] 2026-03-13 20:53:46,780 | INFO     | mean x: 1773424541.5
[2026-03-13 21:54:49] 2026-03-13 20:53:46,781 | INFO     | mean y: 2556979.1735294117
[2026-03-13 21:54:49] 2026-03-13 20:53:46,781 | INFO     | intersect: -1902328182.2119477
[2026-03-13 21:54:49] 2026-03-13 20:53:46,781 | INFO     | chi2: 1.6386340535716442
[2026-03-13 21:54:49] 2026-03-13 20:53:46,781 | INFO     | current chi2=1.6386340535716442 (change=32.036008059975075 %)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,782 | INFO     | sum of square deviations: 11657595320.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,786 | INFO     | sum of deviations: 12946570094.000006
[2026-03-13 21:54:49] 2026-03-13 20:53:46,786 | INFO     | mean x: 1773424389.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,786 | INFO     | mean y: 2556937.6447761194
[2026-03-13 21:54:49] 2026-03-13 20:53:46,786 | INFO     | intersect: -1966954143.1874268
[2026-03-13 21:54:49] 2026-03-13 20:53:46,787 | INFO     | chi2: 1.6388900438120029
[2026-03-13 21:54:49] 2026-03-13 20:53:46,787 | INFO     | current chi2=1.6388900438120029 (change=-0.015622172613876065 %)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,787 | INFO     | right removable region: 334
[2026-03-13 21:54:49] 2026-03-13 20:53:46,788 | INFO     | sum of square deviations: 12187409905.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,792 | INFO     | sum of deviations: -64390486353.500046
[2026-03-13 21:54:49] 2026-03-13 20:53:46,792 | INFO     | mean x: 1773424846.5
[2026-03-13 21:54:49] 2026-03-13 20:53:46,792 | INFO     | mean y: 2565657.5205882355
[2026-03-13 21:54:49] 2026-03-13 20:53:46,792 | INFO     | intersect: 9372209352.746426
[2026-03-13 21:54:49] 2026-03-13 20:53:46,793 | INFO     | chi2: 0.9622734548133084
[2026-03-13 21:54:49] 2026-03-13 20:53:46,793 | INFO     | current chi2=0.9622734548133084 (change=60.088742703422504 %)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,794 | INFO     | sum of square deviations: 11657595320.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,797 | INFO     | sum of deviations: -62392227888.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,798 | INFO     | mean x: 1773424999.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,798 | INFO     | mean y: 2565065.095522388
[2026-03-13 21:54:49] 2026-03-13 20:53:46,798 | INFO     | intersect: 9494053973.623201
[2026-03-13 21:54:49] 2026-03-13 20:53:46,798 | INFO     | chi2: 0.9451367257943337
[2026-03-13 21:54:49] 2026-03-13 20:53:46,799 | INFO     | current chi2=0.9451367257943337 (change=1.7808585421593477 %)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,799 | INFO     | left removable region: 20
[2026-03-13 21:54:49] 2026-03-13 20:53:46,799 | INFO     | sum of square deviations: 9599817202.5
[2026-03-13 21:54:49] 2026-03-13 20:53:46,803 | INFO     | sum of deviations: -17074401664.0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,803 | INFO     | mean x: 1773424968.5
[2026-03-13 21:54:49] 2026-03-13 20:53:46,803 | INFO     | mean y: 2565220.668789809
[2026-03-13 21:54:49] 2026-03-13 20:53:46,803 | INFO     | intersect: 3156809681.2039275
[2026-03-13 21:54:49] 2026-03-13 20:53:46,804 | INFO     | chi2: 0.10480915497505021
[2026-03-13 21:54:49] 2026-03-13 20:53:46,804 | INFO     | current memory leak: -1.78 B/s (using 314 data points, chi2=0.10)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | could have reported an average CPU frequency of 1999 MHz (15 samples)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | ..............................
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . Timing measurements:
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . get job = 0 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . initial setup = 8 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . payload setup = 9 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . stage-in = 0 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . payload execution = 21020 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,805 | INFO     | . stage-out = 4 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,806 | INFO     | . log creation = 1 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,806 | INFO     | ..............................
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | 
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | job summary report
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | --------------------------------------------------
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | PanDA job id: 7051843035
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | task id: 48997968
[2026-03-13 21:54:49] 2026-03-13 20:53:46,933 | INFO     | errors: (none)
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | pilot state: finished 
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | transexitcode: 0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | exeerrorcode: 0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | exeerrordiag: 
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | exitcode: 0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | exitmsg: OK
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | cpuconsumptiontime: 83614 s
[2026-03-13 21:54:49] 2026-03-13 20:53:46,934 | INFO     | nevents: 400
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | neventsw: 0
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | pid: 32731
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | pgrp: 32731
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | corecount: 8
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | event service: False
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | sizes: {0: 2280188, 1: 2280188, 21034: 2313833, 21039: 2322833, 21041: 2322889, 21042: 2323083}
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | --------------------------------------------------
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | 
[2026-03-13 21:54:49] 2026-03-13 20:53:46,935 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-03-13 21:54:49] 2026-03-13 20:53:47,453 | INFO     | time since job start (21045s) is within the limit (345600.0s)
[2026-03-13 21:54:49] 2026-03-13 20:53:47,562 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,562 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,562 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,563 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | job 7051843035 has completed (purged errors)
[2026-03-13 21:54:49] 2026-03-13 20:53:47,564 | INFO     | overall cleanup function is called
[2026-03-13 21:54:49] 2026-03-13 20:53:48,574 | INFO     | --- collectZombieJob: --- 10, [32731]
[2026-03-13 21:54:49] 2026-03-13 20:53:48,574 | INFO     | zombie collector waiting for pid 32731
[2026-03-13 21:54:49] 2026-03-13 20:53:48,574 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 21:54:49] 2026-03-13 20:53:48,574 | INFO     | collected zombie processes
[2026-03-13 21:54:49] 2026-03-13 20:53:48,574 | INFO     | will attempt to kill all subprocesses of pid=32731
[2026-03-13 21:54:49] 2026-03-13 20:53:48,649 | INFO     | process IDs to be killed: [32731] (in reverse order)
[2026-03-13 21:54:49] 2026-03-13 20:53:49,634 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 21:54:49] 2026-03-13 20:53:49,635 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 21:54:49] 2026-03-13 20:53:49,637 | INFO     | did not find any defunct processes belonging to 32731
[2026-03-13 21:54:49] 2026-03-13 20:53:49,638 | INFO     | did not find any defunct processes belonging to 32731
[2026-03-13 21:54:49] 2026-03-13 20:53:49,639 | INFO     | ready for new job
[2026-03-13 21:54:49] 2026-03-13 20:53:49,639 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 21:54:49] 2026-03-13 20:53:49,641 | INFO     | **************************************
[2026-03-13 21:54:49] 2026-03-13 20:53:49,642 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 21:54:49] 2026-03-13 20:53:49,642 | INFO     | **************************************
[2026-03-13 21:54:49] 2026-03-13 20:53:49,642 | INFO     | 
[2026-03-13 21:54:49] 2026-03-13 20:53:49,642 | INFO     | pilot is running in a VM
[2026-03-13 21:54:49] 2026-03-13 20:53:49,643 | INFO     | architecture information:
[2026-03-13 21:54:49] 2026-03-13 20:53:49,656 | INFO     | executing command: cat /etc/os-release
[2026-03-13 21:54:49] 2026-03-13 20:53:49,908 | INFO     | cat /etc/os-release:
[2026-03-13 21:54:49] NAME="CentOS Linux"
[2026-03-13 21:54:49] VERSION="7 (Core)"
[2026-03-13 21:54:49] ID="centos"
[2026-03-13 21:54:49] ID_LIKE="rhel fedora"
[2026-03-13 21:54:49] VERSION_ID="7"
[2026-03-13 21:54:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 21:54:49] ANSI_COLOR="0;31"
[2026-03-13 21:54:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 21:54:49] HOME_URL="https://www.centos.org/"
[2026-03-13 21:54:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 21:54:49] 
[2026-03-13 21:54:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 21:54:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 21:54:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 21:54:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 21:54:49] 
[2026-03-13 21:54:49] 2026-03-13 20:53:49,908 | INFO     | **************************************
[2026-03-13 21:54:49] 2026-03-13 20:53:50,412 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-03-13 21:54:49] 2026-03-13 20:53:50,505 | INFO     | sufficient remaining disk space (495479422976 B)
[2026-03-13 21:54:49] 2026-03-13 20:53:50,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 21:54:49] 2026-03-13 20:53:50,506 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 21:54:49] 2026-03-13 20:53:50,506 | INFO     | update_server=False
[2026-03-13 21:54:49] 2026-03-13 20:53:50,506 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 21:54:49] 2026-03-13 20:53:50,592 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 21:54:49] 2026-03-13 20:53:50,592 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 21:54:49] 2026-03-13 20:53:50,592 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 21:54:49] 2026-03-13 20:53:50,592 | INFO     | will abort loop
[2026-03-13 21:54:49] 2026-03-13 20:53:51,082 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 21:54:49] 2026-03-13 20:53:51,228 | INFO     | all job control threads have been joined
[2026-03-13 21:54:49] 2026-03-13 20:53:51,392 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 21:54:49] 2026-03-13 20:53:51,427 | INFO     | all payload control threads have been joined
[2026-03-13 21:54:49] 2026-03-13 20:53:51,475 | INFO     | all data control threads have been joined
[2026-03-13 21:54:49] 2026-03-13 20:53:51,512 | INFO     | [job] retrieve thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:51,598 | INFO     | [job] job monitor thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:51,788 | INFO     | [payload] failed_post thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:51,939 | INFO     | [job] validate thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:51,946 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:51,946 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 21:54:49] 2026-03-13 20:53:52,234 | INFO     | [job] control thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,334 | INFO     | [data] copytool_in thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,433 | INFO     | [payload] control thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,481 | INFO     | [data] control thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,648 | INFO     | [payload] validate_post thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,674 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,712 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,793 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:52,952 | INFO     | [job] queue monitor thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:53,399 | INFO     | [data] copytool_out thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:53:55,091 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 21:54:49] 2026-03-13 20:54:20,568 | INFO     | PID=28318 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 21:54:49] 2026-03-13 20:54:20,568 | INFO     | .. there are 2 such processes running
[2026-03-13 21:54:49] 2026-03-13 20:54:20,570 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 21:54:49] 2026-03-13 20:54:20,570 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 21:54:49] 2026-03-13 20:54:20,570 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 21:54:49] 2026-03-13 20:54:38,952 | INFO     | [monitor] cgroup control has ended
[2026-03-13 21:54:49] 2026-03-13 20:54:39,294 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139727939643200)>', '<ExcThread(monitor, started 139727189550848)>']
[2026-03-13 21:54:49] 2026-03-13 20:54:39,684 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 21:54:49] 2026-03-13 20:54:39,684 | INFO     | [monitor] control thread has ended
[2026-03-13 21:54:49] 2026-03-13 20:54:44,320 | INFO     | all workflow threads have been joined
[2026-03-13 21:54:49] 2026-03-13 20:54:44,320 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 21:54:49] 2026-03-13 20:54:44,320 | INFO     | traces error code: 0
[2026-03-13 21:54:49] 2026-03-13 20:54:44,320 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 21:54:49] 2026-03-13 20:54:44,704 [wrapper] ==== pilot stdout END ====
[2026-03-13 21:54:49] 2026-03-13 20:54:44,816 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 21:54:49] 2026-03-13 20:54:44,860 [wrapper] pilotpid: 28318
[2026-03-13 21:54:49] 2026-03-13 20:54:44,946 [wrapper] Pilot exit status: 0
[2026-03-13 21:54:49] 2026-03-13 20:54:45,405 [wrapper] pandaids: 7051843035
[2026-03-13 21:54:49] 2026-03-13 20:54:46,288 [wrapper] cleanup supervisor_pilot 22150 28319
[2026-03-13 21:54:49] 2026-03-13 20:54:46,408 [wrapper] Test setup, not cleaning
[2026-03-13 21:54:49] 2026-03-13 20:54:46,513 [wrapper] apfmon messages muted
[2026-03-13 21:54:49] 2026-03-13 20:54:46,570 [wrapper] ==== wrapper stdout END ====
[2026-03-13 21:54:49] 2026-03-13 20:54:46,668 [wrapper] ==== wrapper stderr END ====
[2026-03-13 21:54:49]  *** Error codes and diagnostics ***
[2026-03-13 21:54:49]     "exeErrorCode": 0,
[2026-03-13 21:54:49]     "exeErrorDiag": "",
[2026-03-13 21:54:49]     "pilotErrorCode": 0,
[2026-03-13 21:54:49]     "pilotErrorDiag": "",
[2026-03-13 21:54:49]  *** Listing of results directory ***
[2026-03-13 21:54:49] total 643492
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc    585013 Mar 12 15:32 pilot3.tar.gz
[2026-03-13 21:54:49] -rwx------. 1 boinc boinc     36322 Mar 12 15:33 runpilot2-wrapper.sh
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc      5111 Mar 12 15:33 queuedata.json
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc       100 Mar 13 16:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 21:54:49] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 16:02 run_atlas
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc       105 Mar 13 16:02 job.xml
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc      6391 Mar 13 16:02 init_data.xml
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc 356498694 Mar 13 16:02 EVNT.48997965._000100.pool.root.1
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc     15845 Mar 13 16:02 start_atlas.sh
[2026-03-13 21:54:49] drwxrwx--x. 2 boinc boinc        68 Mar 13 16:02 shared
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc    597535 Mar 13 16:02 input.tar.gz
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc         0 Mar 13 16:02 boinc_lockfile
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc      2565 Mar 13 16:02 pandaJob.out
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc   1006539 Mar 13 16:02 agis_schedconf.cvmfs.json
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc       415 Mar 13 16:03 workernode_map.json
[2026-03-13 21:54:49] drwx------. 5 boinc boinc      4096 Mar 13 16:03 pilot3
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc 291509631 Mar 13 21:51 HITS.48997968._003081.pool.root.1
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc       531 Mar 13 21:52 boinc_task_state.xml
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc      1035 Mar 13 21:53 memory_monitor_summary.json
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc   1511579 Mar 13 21:53 agis_ddmendpoints.agis.ALL.json
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc    570785 Mar 13 21:53 log.48997968._003081.job.log.tgz.1
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc      6317 Mar 13 21:53 heartbeat.json
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc        95 Mar 13 21:54 pilot_heartbeat.json
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc      8192 Mar 13 21:54 boinc_mmap_file
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc        28 Mar 13 21:54 wrapper_checkpoint.txt
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc      5067 Mar 13 21:54 pilotlog.txt
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc   2929843 Mar 13 21:54 log.48997968._003081.job.log.1
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc       357 Mar 13 21:54 output.list
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc       620 Mar 13 21:54 runtime_log
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc   3522560 Mar 13 21:54 result.tar.gz
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc      8832 Mar 13 21:54 runtime_log.err
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc       656 Mar 13 21:54 n6cNDm7GwK9n9Rq4apOajLDm4fhM0noT9bVooX4SDmlJkLDmc1MsXm.diag
[2026-03-13 21:54:49] -rw-r--r--. 1 boinc boinc     20734 Mar 13 21:54 stderr.txt
[2026-03-13 21:54:49] HITS file was successfully produced:
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc 291509631 Mar 13 21:51 shared/HITS.pool.root.1
[2026-03-13 21:54:49]  *** Contents of shared directory: ***
[2026-03-13 21:54:49] total 636864
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc 356498694 Mar 13 16:02 ATLAS.root_0
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc     15845 Mar 13 16:02 start_atlas.sh
[2026-03-13 21:54:49] -rw-r--r--. 2 boinc boinc    597535 Mar 13 16:02 input.tar.gz
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc 291509631 Mar 13 21:51 HITS.pool.root.1
[2026-03-13 21:54:49] -rw-------. 1 boinc boinc   3522560 Mar 13 21:54 result.tar.gz
21:54:50 (24402): run_atlas exited; CPU time 83823.069949
21:54:50 (24402): called boinc_finish(0)

</stderr_txt>
]]>

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