Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:50:52 (2261): wrapper (7.7.26015): starting
15:50:52 (2261): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 15:50:52] Arguments: --nthreads 8
[2026-03-13 15:50:52] Threads: 8
[2026-03-13 15:50:52] Checking for CVMFS
[2026-03-13 15:50:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 15:50:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 15:50:55] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 15:50:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 15:50:56] 2.11.2.0 3780 126277 138956 157242 2 53 14230364 25165825 4934 130560 154 38750568 99.847 24983324 893 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 15:50:56] CVMFS is ok
[2026-03-13 15:50:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 15:50:56] Checking for apptainer binary...
[2026-03-13 15:50:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 15:50:56] Running /usr/bin/apptainer --version
[2026-03-13 15:50:56] apptainer version 1.3.2-1.el7
[2026-03-13 15:50:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 15:51:24] cg-vwn360.simple-grid.lan
[2026-03-13 15:51:24] apptainer works
[2026-03-13 15:51:24] Set ATHENA_PROC_NUMBER=8
[2026-03-13 15:51:24] Set ATHENA_CORE_NUMBER=8
[2026-03-13 15:51:24] Starting ATLAS job with PandaID=7043695211
[2026-03-13 15:51:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 19:52:13]  *** The last 200 lines of the pilot log: ***
[2026-03-13 19:52:13] 2026-03-13 18:51:04,669 | INFO     | total number of processed events: 400 (read)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,671 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7043695211/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,672 | INFO     | extracted standard info from prmon json
[2026-03-13 19:52:13] 2026-03-13 18:51:04,672 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 19:52:13] 2026-03-13 18:51:04,672 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 19:52:13] 2026-03-13 18:51:04,672 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 19:52:13] 2026-03-13 18:51:04,672 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 19:52:13] 2026-03-13 18:51:04,677 | INFO     | fitting pss+swap vs Time
[2026-03-13 19:52:13] 2026-03-13 18:51:04,678 | INFO     | sum of square deviations: 3627000098.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,680 | INFO     | sum of deviations: 66215420700.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,680 | INFO     | mean x: 1773420953.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,680 | INFO     | mean y: 2442579.3127753306
[2026-03-13 19:52:13] 2026-03-13 18:51:04,681 | INFO     | intersect: -32373573772.559387
[2026-03-13 19:52:13] 2026-03-13 18:51:04,681 | INFO     | chi2: 5.994841912917785
[2026-03-13 19:52:13] 2026-03-13 18:51:04,681 | INFO     | sum of square deviations: 3392567795.5
[2026-03-13 19:52:13] 2026-03-13 18:51:04,687 | INFO     | sum of deviations: 79434720970.50002
[2026-03-13 19:52:13] 2026-03-13 18:51:04,688 | INFO     | mean x: 1773420800.5
[2026-03-13 19:52:13] 2026-03-13 18:51:04,688 | INFO     | mean y: 2451004.6441441444
[2026-03-13 19:52:13] 2026-03-13 18:51:04,688 | INFO     | intersect: -41521018810.123856
[2026-03-13 19:52:13] 2026-03-13 18:51:04,688 | INFO     | chi2: 5.273613364154474
[2026-03-13 19:52:13] 2026-03-13 18:51:04,689 | INFO     | current chi2=5.273613364154474 (change=12.030818480954368 %)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,689 | INFO     | right removable region: 221
[2026-03-13 19:52:13] 2026-03-13 18:51:04,689 | INFO     | sum of square deviations: 3392567795.5
[2026-03-13 19:52:13] 2026-03-13 18:51:04,691 | INFO     | sum of deviations: -8414716217.499996
[2026-03-13 19:52:13] 2026-03-13 18:51:04,691 | INFO     | mean x: 1773421105.5
[2026-03-13 19:52:13] 2026-03-13 18:51:04,692 | INFO     | mean y: 2491072.9684684686
[2026-03-13 19:52:13] 2026-03-13 18:51:04,692 | INFO     | intersect: 4401175561.072642
[2026-03-13 19:52:13] 2026-03-13 18:51:04,692 | INFO     | chi2: 1.6988831102024438
[2026-03-13 19:52:13] 2026-03-13 18:51:04,692 | INFO     | current chi2=1.6988831102024438 (change=71.66091892195419 %)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,693 | INFO     | sum of square deviations: 3168461268.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,695 | INFO     | sum of deviations: -34215409350.000004
[2026-03-13 19:52:13] 2026-03-13 18:51:04,695 | INFO     | mean x: 1773421258.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,695 | INFO     | mean y: 2508478.3778801844
[2026-03-13 19:52:13] 2026-03-13 18:51:04,695 | INFO     | intersect: 19153234701.634956
[2026-03-13 19:52:13] 2026-03-13 18:51:04,695 | INFO     | chi2: 0.9607460135308946
[2026-03-13 19:52:13] 2026-03-13 18:51:04,696 | INFO     | current chi2=0.9607460135308946 (change=43.44837453729177 %)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,696 | INFO     | sum of square deviations: 2954447953.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,698 | INFO     | sum of deviations: -33452460786.499996
[2026-03-13 19:52:13] 2026-03-13 18:51:04,698 | INFO     | mean x: 1773421410.5
[2026-03-13 19:52:13] 2026-03-13 18:51:04,698 | INFO     | mean y: 2507897.995283019
[2026-03-13 19:52:13] 2026-03-13 18:51:04,698 | INFO     | intersect: 20082506305.972233
[2026-03-13 19:52:13] 2026-03-13 18:51:04,699 | INFO     | chi2: 0.9461203479859319
[2026-03-13 19:52:13] 2026-03-13 18:51:04,699 | INFO     | current chi2=0.9461203479859319 (change=1.522323833664534 %)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,699 | INFO     | left removable region: 30
[2026-03-13 19:52:13] 2026-03-13 18:51:04,699 | INFO     | sum of square deviations: 2160561440.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,701 | INFO     | sum of deviations: 2852029807.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,701 | INFO     | mean x: 1773421685.0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,701 | INFO     | mean y: 2500371.115183246
[2026-03-13 19:52:13] 2026-03-13 18:51:04,701 | INFO     | intersect: -2338489064.4827065
[2026-03-13 19:52:13] 2026-03-13 18:51:04,702 | INFO     | chi2: 0.04177524095881469
[2026-03-13 19:52:13] 2026-03-13 18:51:04,702 | INFO     | current memory leak: 1.32 B/s (using 191 data points, chi2=0.04)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | ..............................
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . Timing measurements:
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . get job = 0 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . initial setup = 97 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . payload setup = 138 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . stage-in = 0 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . payload execution = 13909 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,703 | INFO     | . stage-out = 3 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,704 | INFO     | . log creation = 1 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,704 | INFO     | ..............................
[2026-03-13 19:52:13] 2026-03-13 18:51:04,879 | INFO     | 
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | job summary report
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | --------------------------------------------------
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | PanDA job id: 7043695211
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | task id: 48955006
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | errors: (none)
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | pilot state: finished 
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | transexitcode: 0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,880 | INFO     | exeerrorcode: 0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | exeerrordiag: 
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | exitcode: 0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | exitmsg: OK
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | cpuconsumptiontime: 52872 s
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | nevents: 400
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | neventsw: 0
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | pid: 10953
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | pgrp: 10953
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | corecount: 8
[2026-03-13 19:52:13] 2026-03-13 18:51:04,881 | INFO     | event service: False
[2026-03-13 19:52:13] 2026-03-13 18:51:04,882 | INFO     | sizes: {0: 2279140, 1: 2280198, 2: 2280286, 14052: 2310683, 14056: 2319681, 14058: 2319737, 14061: 2320059}
[2026-03-13 19:52:13] 2026-03-13 18:51:04,882 | INFO     | --------------------------------------------------
[2026-03-13 19:52:13] 2026-03-13 18:51:04,882 | INFO     | 
[2026-03-13 19:52:13] 2026-03-13 18:51:04,882 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,266 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 19:52:13] 2026-03-13 18:51:05,268 | INFO     | job 7043695211 has completed (purged errors)
[2026-03-13 19:52:13] 2026-03-13 18:51:05,269 | INFO     | overall cleanup function is called
[2026-03-13 19:52:13] 2026-03-13 18:51:06,277 | INFO     | --- collectZombieJob: --- 10, [10953]
[2026-03-13 19:52:13] 2026-03-13 18:51:06,278 | INFO     | zombie collector waiting for pid 10953
[2026-03-13 19:52:13] 2026-03-13 18:51:06,278 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 19:52:13] 2026-03-13 18:51:06,278 | INFO     | collected zombie processes
[2026-03-13 19:52:13] 2026-03-13 18:51:06,278 | INFO     | will attempt to kill all subprocesses of pid=10953
[2026-03-13 19:52:13] 2026-03-13 18:51:06,385 | INFO     | process IDs to be killed: [10953] (in reverse order)
[2026-03-13 19:52:13] 2026-03-13 18:51:06,437 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 19:52:13] 2026-03-13 18:51:06,438 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 19:52:13] 2026-03-13 18:51:06,441 | INFO     | did not find any defunct processes belonging to 10953
[2026-03-13 19:52:13] 2026-03-13 18:51:06,445 | INFO     | did not find any defunct processes belonging to 10953
[2026-03-13 19:52:13] 2026-03-13 18:51:06,445 | INFO     | ready for new job
[2026-03-13 19:52:13] 2026-03-13 18:51:06,445 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 19:52:13] 2026-03-13 18:51:06,447 | INFO     | **************************************
[2026-03-13 19:52:13] 2026-03-13 18:51:06,448 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 19:52:13] 2026-03-13 18:51:06,448 | INFO     | **************************************
[2026-03-13 19:52:13] 2026-03-13 18:51:06,448 | INFO     | 
[2026-03-13 19:52:13] 2026-03-13 18:51:06,448 | INFO     | pilot is running in a VM
[2026-03-13 19:52:13] 2026-03-13 18:51:06,449 | INFO     | architecture information:
[2026-03-13 19:52:13] 2026-03-13 18:51:06,449 | INFO     | executing command: cat /etc/os-release
[2026-03-13 19:52:13] 2026-03-13 18:51:06,557 | INFO     | cat /etc/os-release:
[2026-03-13 19:52:13] NAME="CentOS Linux"
[2026-03-13 19:52:13] VERSION="7 (Core)"
[2026-03-13 19:52:13] ID="centos"
[2026-03-13 19:52:13] ID_LIKE="rhel fedora"
[2026-03-13 19:52:13] VERSION_ID="7"
[2026-03-13 19:52:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 19:52:13] ANSI_COLOR="0;31"
[2026-03-13 19:52:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 19:52:13] HOME_URL="https://www.centos.org/"
[2026-03-13 19:52:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 19:52:13] 
[2026-03-13 19:52:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 19:52:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 19:52:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 19:52:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 19:52:13] 
[2026-03-13 19:52:13] 2026-03-13 18:51:06,558 | INFO     | **************************************
[2026-03-13 19:52:13] 2026-03-13 18:51:07,062 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-03-13 19:52:13] 2026-03-13 18:51:07,124 | INFO     | sufficient remaining disk space (494943600640 B)
[2026-03-13 19:52:13] 2026-03-13 18:51:07,124 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 19:52:13] 2026-03-13 18:51:07,124 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 19:52:13] 2026-03-13 18:51:07,125 | INFO     | update_server=False
[2026-03-13 19:52:13] 2026-03-13 18:51:07,125 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 19:52:13] 2026-03-13 18:51:07,251 | INFO     | all data control threads have been joined
[2026-03-13 19:52:13] 2026-03-13 18:51:07,318 | INFO     | all payload control threads have been joined
[2026-03-13 19:52:13] 2026-03-13 18:51:07,515 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 19:52:13] 2026-03-13 18:51:07,516 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 19:52:13] 2026-03-13 18:51:07,516 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 19:52:13] 2026-03-13 18:51:07,516 | INFO     | will abort loop
[2026-03-13 19:52:13] 2026-03-13 18:51:07,755 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 19:52:13] 2026-03-13 18:51:08,063 | INFO     | all job control threads have been joined
[2026-03-13 19:52:13] 2026-03-13 18:51:08,107 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 19:52:13] 2026-03-13 18:51:08,131 | INFO     | [job] retrieve thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,257 | INFO     | [data] control thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,283 | INFO     | [payload] failed_post thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,324 | INFO     | [payload] control thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,344 | INFO     | [payload] validate_post thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,346 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:08,521 | INFO     | [job] job monitor thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,028 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,068 | INFO     | [job] control thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,128 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,370 | INFO     | [job] validate thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,461 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,493 | INFO     | [data] copytool_in thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,762 | INFO     | [data] copytool_out thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:09,893 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 19:52:13] 2026-03-13 18:51:10,899 | INFO     | [job] queue monitor thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:12,116 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 19:52:13] 2026-03-13 18:51:37,670 | INFO     | PID=6434 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-03-13 19:52:13] 2026-03-13 18:51:37,670 | INFO     | .. there are 9 such processes running
[2026-03-13 19:52:13] 2026-03-13 18:51:37,671 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 19:52:13] 2026-03-13 18:51:37,671 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 19:52:13] 2026-03-13 18:51:37,671 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 19:52:13] 2026-03-13 18:52:05,149 | INFO     | [monitor] cgroup control has ended
[2026-03-13 19:52:13] 2026-03-13 18:52:05,200 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139996371224384)>', '<ExcThread(monitor, started 139995750831872)>']
[2026-03-13 19:52:13] 2026-03-13 18:52:05,837 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 19:52:13] 2026-03-13 18:52:05,838 | INFO     | [monitor] control thread has ended
[2026-03-13 19:52:13] 2026-03-13 18:52:10,226 | INFO     | all workflow threads have been joined
[2026-03-13 19:52:13] 2026-03-13 18:52:10,227 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 19:52:13] 2026-03-13 18:52:10,227 | INFO     | traces error code: 0
[2026-03-13 19:52:13] 2026-03-13 18:52:10,227 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 19:52:13] 2026-03-13 18:52:10,577 [wrapper] ==== pilot stdout END ====
[2026-03-13 19:52:13] 2026-03-13 18:52:10,658 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 19:52:13] 2026-03-13 18:52:10,749 [wrapper] pilotpid: 6434
[2026-03-13 19:52:13] 2026-03-13 18:52:10,834 [wrapper] Pilot exit status: 0
[2026-03-13 19:52:13] 2026-03-13 18:52:11,235 [wrapper] pandaids: 7043695211
[2026-03-13 19:52:13] 2026-03-13 18:52:11,913 [wrapper] cleanup supervisor_pilot 18987 6435
[2026-03-13 19:52:13] 2026-03-13 18:52:11,935 [wrapper] Test setup, not cleaning
[2026-03-13 19:52:13] 2026-03-13 18:52:11,959 [wrapper] apfmon messages muted
[2026-03-13 19:52:13] 2026-03-13 18:52:11,982 [wrapper] ==== wrapper stdout END ====
[2026-03-13 19:52:13] 2026-03-13 18:52:12,047 [wrapper] ==== wrapper stderr END ====
[2026-03-13 19:52:13]  *** Error codes and diagnostics ***
[2026-03-13 19:52:13]     "exeErrorCode": 0,
[2026-03-13 19:52:13]     "exeErrorDiag": "",
[2026-03-13 19:52:13]     "pilotErrorCode": 0,
[2026-03-13 19:52:13]     "pilotErrorDiag": "",
[2026-03-13 19:52:13]  *** Listing of results directory ***
[2026-03-13 19:52:13] total 611892
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc      5111 Mar 13 01:52 queuedata.json
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc    585013 Mar 13 01:52 pilot3.tar.gz
[2026-03-13 19:52:13] -rwx------. 1 boinc boinc     36322 Mar 13 01:53 runpilot2-wrapper.sh
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc       100 Mar 13 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 19:52:13] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 15:50 run_atlas
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc       105 Mar 13 15:50 job.xml
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc      6390 Mar 13 15:50 init_data.xml
[2026-03-13 19:52:13] -rw-r--r--. 2 boinc boinc 438613735 Mar 13 15:50 EVNT.46701403._000988.pool.root.1
[2026-03-13 19:52:13] -rw-r--r--. 2 boinc boinc     15845 Mar 13 15:50 start_atlas.sh
[2026-03-13 19:52:13] drwxrwx--x. 2 boinc boinc        68 Mar 13 15:50 shared
[2026-03-13 19:52:13] -rw-r--r--. 2 boinc boinc    597529 Mar 13 15:50 input.tar.gz
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc         0 Mar 13 15:50 boinc_lockfile
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc      2564 Mar 13 15:51 pandaJob.out
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc       415 Mar 13 15:56 workernode_map.json
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc   1006539 Mar 13 15:56 agis_schedconf.cvmfs.json
[2026-03-13 19:52:13] drwx------. 5 boinc boinc      4096 Mar 13 15:56 pilot3
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc 179185799 Mar 13 19:49 HITS.48955006._049902.pool.root.1
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc       531 Mar 13 19:50 boinc_task_state.xml
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc      1012 Mar 13 19:50 memory_monitor_summary.json
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc   1511579 Mar 13 19:50 agis_ddmendpoints.agis.ALL.json
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc    466202 Mar 13 19:50 log.48955006._049902.job.log.tgz.1
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc      6322 Mar 13 19:51 heartbeat.json
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc        95 Mar 13 19:51 pilot_heartbeat.json
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc      5065 Mar 13 19:52 pilotlog.txt
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc      8192 Mar 13 19:52 boinc_mmap_file
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc        28 Mar 13 19:52 wrapper_checkpoint.txt
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc   1960856 Mar 13 19:52 log.48955006._049902.job.log.1
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc       357 Mar 13 19:52 output.list
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc       620 Mar 13 19:52 runtime_log
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc   2447360 Mar 13 19:52 result.tar.gz
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc      8816 Mar 13 19:52 runtime_log.err
[2026-03-13 19:52:13] -rw-------. 1 boinc boinc       656 Mar 13 19:52 QXCLDm7w5K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmEEoLDmszrN6m.diag
[2026-03-13 19:52:13] -rw-r--r--. 1 boinc boinc     20709 Mar 13 19:52 stderr.txt
[2026-03-13 19:52:13] HITS file was successfully produced:
[2026-03-13 19:52:14] -rw-------. 1 boinc boinc 179185799 Mar 13 19:49 shared/HITS.pool.root.1
[2026-03-13 19:52:14]  *** Contents of shared directory: ***
[2026-03-13 19:52:14] total 606316
[2026-03-13 19:52:14] -rw-r--r--. 2 boinc boinc 438613735 Mar 13 15:50 ATLAS.root_0
[2026-03-13 19:52:14] -rw-r--r--. 2 boinc boinc     15845 Mar 13 15:50 start_atlas.sh
[2026-03-13 19:52:14] -rw-r--r--. 2 boinc boinc    597529 Mar 13 15:50 input.tar.gz
[2026-03-13 19:52:14] -rw-------. 1 boinc boinc 179185799 Mar 13 19:49 HITS.pool.root.1
[2026-03-13 19:52:14] -rw-------. 1 boinc boinc   2447360 Mar 13 19:52 result.tar.gz
19:52:15 (2261): run_atlas exited; CPU time 53084.097410
19:52:15 (2261): called boinc_finish(0)

</stderr_txt>
]]>

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