Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:16:18 (98512): wrapper (7.7.26015): starting
07:16:18 (98512): wrapper: running run_atlas (--nthreads 2)
[2026-03-14 07:16:18] Arguments: --nthreads 2
[2026-03-14 07:16:18] Threads: 2
[2026-03-14 07:16:18] Checking for CVMFS
[2026-03-14 07:16:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-14 07:16:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-14 07:16:19] Running cvmfs_config stat atlas.cern.ch
[2026-03-14 07:16:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-14 07:16:20] 2.13.3.0 1801 2185 46588 157267 0 50 2974208 4096000 0 130560 0 300704 99.955 78343 71 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
[2026-03-14 07:16:20] CVMFS is ok
[2026-03-14 07:16:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-14 07:16:20] Checking for apptainer binary...
[2026-03-14 07:16:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-14 07:16:20] Running /usr/bin/apptainer --version
[2026-03-14 07:16:20] apptainer version 1.3.1
[2026-03-14 07:16:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-14 07:16:20] ahanllin04
[2026-03-14 07:16:20] apptainer works
[2026-03-14 07:16:20] Set ATHENA_PROC_NUMBER=2
[2026-03-14 07:16:20] Set ATHENA_CORE_NUMBER=2
[2026-03-14 07:16:20] Starting ATLAS job with PandaID=7043636190
[2026-03-14 07:16:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 11:11:15]  *** The last 200 lines of the pilot log: ***
[2026-03-14 11:11:15] 2026-03-14 10:10:36,441 | INFO     | job 7043636190 has state=finished
[2026-03-14 11:11:15] 2026-03-14 10:10:36,442 | INFO     | preparing for final server update for job 7043636190 in state='finished'
[2026-03-14 11:11:15] 2026-03-14 10:10:36,442 | INFO     | reading metadata from: /var/lib/boinc-client/slots/0/PanDA_Pilot-7043636190/jobReport.json
[2026-03-14 11:11:15] 2026-03-14 10:10:36,445 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/0/workernode_map.json
[2026-03-14 11:11:15] 2026-03-14 10:10:36,445 | INFO     | this job has now completed (state=finished)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,445 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,445 | INFO     | log transfer has been attempted: DONE
[2026-03-14 11:11:15] 2026-03-14 10:10:36,446 | INFO     | job 7043636190 has finished - writing final server update
[2026-03-14 11:11:15] 2026-03-14 10:10:36,446 | INFO     | total number of processed events: 400 (read)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,447 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-7043636190/memory_monitor_summary.json (trf name=prmon)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,448 | INFO     | extracted standard info from prmon json
[2026-03-14 11:11:15] 2026-03-14 10:10:36,448 | INFO     | extracted standard memory fields from prmon json
[2026-03-14 11:11:15] 2026-03-14 10:10:36,448 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-14 11:11:15] 2026-03-14 10:10:36,448 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-14 11:11:15] 2026-03-14 10:10:36,448 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-14 11:11:15] 2026-03-14 10:10:36,451 | INFO     | fitting pss+swap vs Time
[2026-03-14 11:11:15] 2026-03-14 10:10:36,452 | INFO     | sum of square deviations: 3772712597.5
[2026-03-14 11:11:15] 2026-03-14 10:10:36,453 | INFO     | sum of deviations: -76874645886.49998
[2026-03-14 11:11:15] 2026-03-14 10:10:36,453 | INFO     | mean x: 1773476013.5
[2026-03-14 11:11:15] 2026-03-14 10:10:36,453 | INFO     | mean y: 2331970.282608696
[2026-03-14 11:11:15] 2026-03-14 10:10:36,453 | INFO     | intersect: 36139550749.24744
[2026-03-14 11:11:15] 2026-03-14 10:10:36,453 | INFO     | chi2: 1.7526273079898436
[2026-03-14 11:11:15] 2026-03-14 10:10:36,454 | INFO     | sum of square deviations: 3531973200.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,454 | INFO     | sum of deviations: -74801171798.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,454 | INFO     | mean x: 1773475861.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,454 | INFO     | mean y: 2333283.96
[2026-03-14 11:11:15] 2026-03-14 10:10:36,455 | INFO     | intersect: 37561528964.79556
[2026-03-14 11:11:15] 2026-03-14 10:10:36,455 | INFO     | chi2: 1.7419380246502267
[2026-03-14 11:11:15] 2026-03-14 10:10:36,455 | INFO     | current chi2=1.7419380246502267 (change=0.6099005356636137 %)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,455 | INFO     | right removable region: 224
[2026-03-14 11:11:15] 2026-03-14 10:10:36,455 | INFO     | sum of square deviations: 3531973200.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | sum of deviations: -95721911016.00003
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | mean x: 1773476166.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | mean y: 2343663.4844444445
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | intersect: 48066277939.89654
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | chi2: 0.5344672725686618
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | current chi2=0.5344672725686618 (change=69.50479602068604 %)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,456 | INFO     | sum of square deviations: 3301699115.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,457 | INFO     | sum of deviations: -85067136054.00002
[2026-03-14 11:11:15] 2026-03-14 10:10:36,457 | INFO     | mean x: 1773476318.5
[2026-03-14 11:11:15] 2026-03-14 10:10:36,457 | INFO     | mean y: 2336605.036363636
[2026-03-14 11:11:15] 2026-03-14 10:10:36,457 | INFO     | intersect: 45695340727.97158
[2026-03-14 11:11:15] 2026-03-14 10:10:36,458 | INFO     | chi2: 0.5204491426759789
[2026-03-14 11:11:15] 2026-03-14 10:10:36,458 | INFO     | current chi2=0.5204491426759789 (change=2.622822876564821 %)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,458 | INFO     | left removable region: 20
[2026-03-14 11:11:15] 2026-03-14 10:10:36,458 | INFO     | sum of square deviations: 2632440055.0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | sum of deviations: -60679529515.49999
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | mean x: 1773476440.5
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | mean y: 2321998.3088235296
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | intersect: 40882157348.01202
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | chi2: 0.4559611923640982
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | current memory leak: -23.05 B/s (using 204 data points, chi2=0.46)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | could have reported an average CPU frequency of 2099 MHz (11 samples)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | ..............................
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | . Timing measurements:
[2026-03-14 11:11:15] 2026-03-14 10:10:36,459 | INFO     | . get job = 0 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . initial setup = 7 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . payload setup = 6 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . stage-in = 0 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . payload execution = 14006 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . stage-out = 1 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | . log creation = 0 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,460 | INFO     | ..............................
[2026-03-14 11:11:15] 2026-03-14 10:10:36,517 | INFO     | 
[2026-03-14 11:11:15] 2026-03-14 10:10:36,518 | INFO     | job summary report
[2026-03-14 11:11:15] 2026-03-14 10:10:36,518 | INFO     | --------------------------------------------------
[2026-03-14 11:11:15] 2026-03-14 10:10:36,518 | INFO     | PanDA job id: 7043636190
[2026-03-14 11:11:15] 2026-03-14 10:10:36,518 | INFO     | task id: 48955010
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | errors: (none)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | pilot state: finished 
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | transexitcode: 0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | exeerrorcode: 0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | exeerrordiag: 
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | exitcode: 0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | exitmsg: OK
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | cpuconsumptiontime: 27493 s
[2026-03-14 11:11:15] 2026-03-14 10:10:36,519 | INFO     | nevents: 400
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | neventsw: 0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | pid: 106897
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | pgrp: 106897
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | corecount: 2
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | event service: False
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | sizes: {0: 2279753, 1: 2280214, 11: 2280214, 14017: 2311005, 14019: 2320211}
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | --------------------------------------------------
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | 
[2026-03-14 11:11:15] 2026-03-14 10:10:36,520 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2026-03-14 11:11:15] 2026-03-14 10:10:36,543 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,544 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | job 7043636190 has completed (purged errors)
[2026-03-14 11:11:15] 2026-03-14 10:10:36,545 | INFO     | overall cleanup function is called
[2026-03-14 11:11:15] 2026-03-14 10:10:37,553 | INFO     | --- collectZombieJob: --- 10, [106897]
[2026-03-14 11:11:15] 2026-03-14 10:10:37,553 | INFO     | zombie collector waiting for pid 106897
[2026-03-14 11:11:15] 2026-03-14 10:10:37,553 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 11:11:15] 2026-03-14 10:10:37,554 | INFO     | collected zombie processes
[2026-03-14 11:11:15] 2026-03-14 10:10:37,554 | INFO     | will attempt to kill all subprocesses of pid=106897
[2026-03-14 11:11:15] 2026-03-14 10:10:37,582 | INFO     | process IDs to be killed: [106897] (in reverse order)
[2026-03-14 11:11:15] 2026-03-14 10:10:37,625 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 11:11:15] 2026-03-14 10:10:37,625 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 11:11:15] 2026-03-14 10:10:37,626 | INFO     | did not find any defunct processes belonging to 106897
[2026-03-14 11:11:15] 2026-03-14 10:10:37,627 | INFO     | did not find any defunct processes belonging to 106897
[2026-03-14 11:11:15] 2026-03-14 10:10:37,627 | INFO     | ready for new job
[2026-03-14 11:11:15] 2026-03-14 10:10:37,627 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | **************************************
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | **************************************
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | 
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | pilot is running in a VM
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | architecture information:
[2026-03-14 11:11:15] 2026-03-14 10:10:37,629 | INFO     | executing command: cat /etc/os-release
[2026-03-14 11:11:15] 2026-03-14 10:10:37,648 | INFO     | cat /etc/os-release:
[2026-03-14 11:11:15] NAME="CentOS Linux"
[2026-03-14 11:11:15] VERSION="7 (Core)"
[2026-03-14 11:11:15] ID="centos"
[2026-03-14 11:11:15] ID_LIKE="rhel fedora"
[2026-03-14 11:11:15] VERSION_ID="7"
[2026-03-14 11:11:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 11:11:15] ANSI_COLOR="0;31"
[2026-03-14 11:11:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 11:11:15] HOME_URL="https://www.centos.org/"
[2026-03-14 11:11:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 11:11:15] 
[2026-03-14 11:11:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 11:11:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 11:11:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 11:11:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 11:11:15] 
[2026-03-14 11:11:15] 2026-03-14 10:10:37,649 | INFO     | **************************************
[2026-03-14 11:11:15] 2026-03-14 10:10:38,151 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2026-03-14 11:11:15] 2026-03-14 10:10:38,173 | INFO     | sufficient remaining disk space (18948816896 B)
[2026-03-14 11:11:15] 2026-03-14 10:10:38,173 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 11:11:15] 2026-03-14 10:10:38,173 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 11:11:15] 2026-03-14 10:10:38,173 | INFO     | update_server=False
[2026-03-14 11:11:15] 2026-03-14 10:10:38,173 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 11:11:15] 2026-03-14 10:10:38,174 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:11:15] 2026-03-14 10:10:38,174 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 11:11:15] 2026-03-14 10:10:38,207 | INFO     | all payload control threads have been joined
[2026-03-14 11:11:15] 2026-03-14 10:10:38,213 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-14 11:11:15] 2026-03-14 10:10:38,214 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-14 11:11:15] 2026-03-14 10:10:38,214 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 11:11:15] 2026-03-14 10:10:38,214 | INFO     | will abort loop
[2026-03-14 11:11:15] 2026-03-14 10:10:38,348 | INFO     | all job control threads have been joined
[2026-03-14 11:11:15] 2026-03-14 10:10:39,175 | INFO     | [job] retrieve thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,176 | INFO     | [job] queue monitor thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,213 | INFO     | [payload] control thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,219 | INFO     | [job] job monitor thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,263 | INFO     | all data control threads have been joined
[2026-03-14 11:11:15] 2026-03-14 10:10:39,291 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,354 | INFO     | [job] control thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,367 | INFO     | [payload] failed_post thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,385 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 11:11:15] 2026-03-14 10:10:39,680 | INFO     | [job] validate thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,759 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:39,840 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:40,007 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:40,218 | INFO     | [payload] validate_post thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:40,269 | INFO     | [data] control thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:40,369 | INFO     | [data] copytool_in thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:41,391 | INFO     | [data] copytool_out thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:10:42,184 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 11:11:15] 2026-03-14 10:11:08,816 | INFO     | [monitor] cgroup control has ended
[2026-03-14 11:11:15] 2026-03-14 10:11:09,114 | INFO     | PID=102534 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-03-14 11:11:15] 2026-03-14 10:11:09,114 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 11:11:15] 2026-03-14 10:11:09,114 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 11:11:15] 2026-03-14 10:11:09,114 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 11:11:15] 2026-03-14 10:11:09,823 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139203290519360)>', '<ExcThread(monitor, started 139202440197888)>']
[2026-03-14 11:11:15] 2026-03-14 10:11:10,120 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 11:11:15] 2026-03-14 10:11:10,120 | INFO     | [monitor] control thread has ended
[2026-03-14 11:11:15] 2026-03-14 10:11:14,847 | INFO     | all workflow threads have been joined
[2026-03-14 11:11:15] 2026-03-14 10:11:14,848 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 11:11:15] 2026-03-14 10:11:14,848 | INFO     | traces error code: 0
[2026-03-14 11:11:15] 2026-03-14 10:11:14,850 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 11:11:15] 2026-03-14 10:11:14,981 [wrapper] ==== pilot stdout END ====
[2026-03-14 11:11:15] 2026-03-14 10:11:14,985 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 11:11:15] 2026-03-14 10:11:14,988 [wrapper] pilotpid: 102534
[2026-03-14 11:11:15] 2026-03-14 10:11:14,992 [wrapper] Pilot exit status: 0
[2026-03-14 11:11:15] 2026-03-14 10:11:15,012 [wrapper] pandaids: 7043636190
[2026-03-14 11:11:15] 2026-03-14 10:11:15,042 [wrapper] cleanup supervisor_pilot  111920 102535
[2026-03-14 11:11:15] 2026-03-14 10:11:15,046 [wrapper] Test setup, not cleaning
[2026-03-14 11:11:15] 2026-03-14 10:11:15,051 [wrapper] apfmon messages muted
[2026-03-14 11:11:15] 2026-03-14 10:11:15,056 [wrapper] ==== wrapper stdout END ====
[2026-03-14 11:11:15] 2026-03-14 10:11:15,061 [wrapper] ==== wrapper stderr END ====
[2026-03-14 11:11:15]  *** Error codes and diagnostics ***
[2026-03-14 11:11:15]     "exeErrorCode": 0,
[2026-03-14 11:11:15]     "exeErrorDiag": "",
[2026-03-14 11:11:15]     "pilotErrorCode": 0,
[2026-03-14 11:11:15]     "pilotErrorDiag": "",
[2026-03-14 11:11:15]  *** Listing of results directory ***
[2026-03-14 11:11:15] total 625584
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc    585013 Mar 13 00:01 pilot3.tar.gz
[2026-03-14 11:11:15] -rwx------ 1 boinc boinc     36322 Mar 13 00:02 runpilot2-wrapper.sh
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc      5111 Mar 13 00:03 queuedata.json
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc       100 Mar 14 07:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 11:11:15] -rwxr-xr-x 1 boinc boinc      7986 Mar 14 07:16 run_atlas
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc       105 Mar 14 07:16 job.xml
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc 445915935 Mar 14 07:16 EVNT.46701403._001519.pool.root.1
[2026-03-14 11:11:15] drwxrwx--x 2 boinc boinc      4096 Mar 14 07:16 shared
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc    597532 Mar 14 07:16 input.tar.gz
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc     15845 Mar 14 07:16 start_atlas.sh
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc      6482 Mar 14 07:16 init_data.xml
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc         0 Mar 14 07:16 boinc_setup_complete
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc         0 Mar 14 07:16 boinc_lockfile
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc      2563 Mar 14 07:16 pandaJob.out
[2026-03-14 11:11:15] -rw------- 1 boinc boinc        51 Mar 14 07:16 setup.sh.local
[2026-03-14 11:11:15] -rw------- 1 boinc boinc   1004571 Mar 14 07:16 agis_schedconf.cvmfs.json
[2026-03-14 11:11:15] -rw------- 1 boinc boinc       422 Mar 14 07:16 workernode_map.json
[2026-03-14 11:11:15] drwx------ 5 boinc boinc      4096 Mar 14 07:16 pilot3
[2026-03-14 11:11:15] -rw------- 1 boinc boinc 186062535 Mar 14 11:10 HITS.48955010._026238.pool.root.1
[2026-03-14 11:11:15] -rw------- 1 boinc boinc        95 Mar 14 11:10 pilot_heartbeat.json
[2026-03-14 11:11:15] -rw------- 1 boinc boinc      1035 Mar 14 11:10 memory_monitor_summary.json
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc       531 Mar 14 11:10 boinc_task_state.xml
[2026-03-14 11:11:15] -rw------- 1 boinc boinc   1511579 Mar 14 11:10 agis_ddmendpoints.agis.ALL.json
[2026-03-14 11:11:15] -rw------- 1 boinc boinc    357270 Mar 14 11:10 log.48955010._026238.job.log.tgz.1
[2026-03-14 11:11:15] -rw------- 1 boinc boinc      6367 Mar 14 11:10 heartbeat.json
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc      8192 Mar 14 11:11 boinc_mmap_file
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc        28 Mar 14 11:11 wrapper_checkpoint.txt
[2026-03-14 11:11:15] -rw------- 1 boinc boinc      4998 Mar 14 11:11 pilotlog.txt
[2026-03-14 11:11:15] -rw------- 1 boinc boinc   1980073 Mar 14 11:11 log.48955010._026238.job.log.1
[2026-03-14 11:11:15] -rw------- 1 boinc boinc       357 Mar 14 11:11 output.list
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc       620 Mar 14 11:11 runtime_log
[2026-03-14 11:11:15] -rw------- 1 boinc boinc   2355200 Mar 14 11:11 result.tar.gz
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc      9419 Mar 14 11:11 runtime_log.err
[2026-03-14 11:11:15] -rw------- 1 boinc boinc       659 Mar 14 11:11 EtHODm6D4K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmS6nLDmEVGQgm.diag
[2026-03-14 11:11:15] -rw-r--r-- 1 boinc boinc     20896 Mar 14 11:11 stderr.txt
[2026-03-14 11:11:15] HITS file was successfully produced:
[2026-03-14 11:11:15] -rw------- 1 boinc boinc 186062535 Mar 14 11:10 shared/HITS.pool.root.1
[2026-03-14 11:11:15]  *** Contents of shared directory: ***
[2026-03-14 11:11:15] total 620080
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc 445915935 Mar 14 07:16 ATLAS.root_0
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc    597532 Mar 14 07:16 input.tar.gz
[2026-03-14 11:11:15] -rw-r--r-- 2 boinc boinc     15845 Mar 14 07:16 start_atlas.sh
[2026-03-14 11:11:15] -rw------- 1 boinc boinc 186062535 Mar 14 11:10 HITS.pool.root.1
[2026-03-14 11:11:15] -rw------- 1 boinc boinc   2355200 Mar 14 11:11 result.tar.gz
11:11:16 (98512): run_atlas exited; CPU time 27516.741367
11:11:16 (98512): called boinc_finish(0)

</stderr_txt>
]]>

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