Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:09:06 (21290): wrapper (7.7.26015): starting
13:09:06 (21290): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 13:09:06] Arguments: --nthreads 8
[2026-03-13 13:09:06] Threads: 8
[2026-03-13 13:09:06] Checking for CVMFS
[2026-03-13 13:09:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 13:09:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 13:09:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 13:09:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 13:09:11] 2.11.2.0 1091 126115 135504 157239 1 53 15965351 25165825 4834 130560 152 42028620 99.834 28705760 986 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 13:09:11] CVMFS is ok
[2026-03-13 13:09:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 13:09:11] Checking for apptainer binary...
[2026-03-13 13:09:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 13:09:11] Running /usr/bin/apptainer --version
[2026-03-13 13:09:11] apptainer version 1.3.2-1.el7
[2026-03-13 13:09:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 13:09:26] cg-vwn498.simple-grid.lan
[2026-03-13 13:09:26] apptainer works
[2026-03-13 13:09:26] Set ATHENA_PROC_NUMBER=8
[2026-03-13 13:09:26] Set ATHENA_CORE_NUMBER=8
[2026-03-13 13:09:26] Starting ATLAS job with PandaID=7043586445
[2026-03-13 13:09:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 16:47:03]  *** The last 200 lines of the pilot log: ***
[2026-03-13 16:47:03] 2026-03-13 15:46:05,806 | INFO     | total number of processed events: 400 (read)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,808 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7043586445/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,809 | INFO     | extracted standard info from prmon json
[2026-03-13 16:47:03] 2026-03-13 15:46:05,809 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 16:47:03] 2026-03-13 15:46:05,809 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 16:47:03] 2026-03-13 15:46:05,809 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 16:47:03] 2026-03-13 15:46:05,809 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 16:47:03] 2026-03-13 15:46:05,813 | INFO     | fitting pss+swap vs Time
[2026-03-13 16:47:03] 2026-03-13 15:46:05,814 | INFO     | sum of square deviations: 2632440055.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,815 | INFO     | sum of deviations: 13302476972.999998
[2026-03-13 16:47:03] 2026-03-13 15:46:05,815 | INFO     | mean x: 1773410540.5
[2026-03-13 16:47:03] 2026-03-13 15:46:05,815 | INFO     | mean y: 2484844.4215686275
[2026-03-13 16:47:03] 2026-03-13 15:46:05,816 | INFO     | intersect: -8959068841.81298
[2026-03-13 16:47:03] 2026-03-13 15:46:05,816 | INFO     | chi2: 5.289128974160039
[2026-03-13 16:47:03] 2026-03-13 15:46:05,816 | INFO     | sum of square deviations: 2443580700.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,818 | INFO     | sum of deviations: 26849780008.000004
[2026-03-13 16:47:03] 2026-03-13 15:46:05,818 | INFO     | mean x: 1773410388.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,818 | INFO     | mean y: 2495568.0904522613
[2026-03-13 16:47:03] 2026-03-13 15:46:05,818 | INFO     | intersect: -19483531139.233734
[2026-03-13 16:47:03] 2026-03-13 15:46:05,818 | INFO     | chi2: 4.5669737477891585
[2026-03-13 16:47:03] 2026-03-13 15:46:05,819 | INFO     | current chi2=4.5669737477891585 (change=13.653575662438161 %)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,819 | INFO     | right removable region: 198
[2026-03-13 16:47:03] 2026-03-13 15:46:05,819 | INFO     | sum of square deviations: 2443580700.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | sum of deviations: -51512824635.00001
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | mean x: 1773410693.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | mean y: 2537064.216080402
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | intersect: 37387590086.75094
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | chi2: 1.317178216211866
[2026-03-13 16:47:03] 2026-03-13 15:46:05,821 | INFO     | current chi2=1.317178216211866 (change=75.0965003378265 %)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,822 | INFO     | sum of square deviations: 2263977332.5
[2026-03-13 16:47:03] 2026-03-13 15:46:05,823 | INFO     | sum of deviations: -65006697221.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,823 | INFO     | mean x: 1773410845.5
[2026-03-13 16:47:03] 2026-03-13 15:46:05,823 | INFO     | mean y: 2548398.6907216497
[2026-03-13 16:47:03] 2026-03-13 15:46:05,823 | INFO     | intersect: 50923368243.893875
[2026-03-13 16:47:03] 2026-03-13 15:46:05,824 | INFO     | chi2: 0.9856647735389943
[2026-03-13 16:47:03] 2026-03-13 15:46:05,824 | INFO     | current chi2=0.9856647735389943 (change=25.168457737350575 %)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,824 | INFO     | sum of square deviations: 2093397390.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,825 | INFO     | sum of deviations: -61830348165.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | mean x: 1773410998.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | mean y: 2545523.306878307
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | intersect: 52381811863.16799
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | chi2: 0.9757924858040778
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | current chi2=0.9757924858040778 (change=1.0015867463204902 %)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,826 | INFO     | left removable region: 30
[2026-03-13 16:47:03] 2026-03-13 15:46:05,827 | INFO     | sum of square deviations: 1470248962.0
[2026-03-13 16:47:03] 2026-03-13 15:46:05,828 | INFO     | sum of deviations: -29925785314.500004
[2026-03-13 16:47:03] 2026-03-13 15:46:05,831 | INFO     | mean x: 1773411272.5
[2026-03-13 16:47:03] 2026-03-13 15:46:05,831 | INFO     | mean y: 2540658.529761905
[2026-03-13 16:47:03] 2026-03-13 15:46:05,831 | INFO     | intersect: 36098961323.88186
[2026-03-13 16:47:03] 2026-03-13 15:46:05,832 | INFO     | chi2: 0.16234043353622318
[2026-03-13 16:47:03] 2026-03-13 15:46:05,832 | INFO     | current memory leak: -20.35 B/s (using 168 data points, chi2=0.16)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,832 | INFO     | could have reported an average CPU frequency of 2249 MHz (11 samples)
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | ..............................
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . Timing measurements:
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . get job = 0 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . initial setup = 95 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . payload setup = 140 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . stage-in = 0 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . payload execution = 12531 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . stage-out = 3 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | . log creation = 1 s
[2026-03-13 16:47:03] 2026-03-13 15:46:05,833 | INFO     | ..............................
[2026-03-13 16:47:03] 2026-03-13 15:46:06,148 | INFO     | 
[2026-03-13 16:47:03] 2026-03-13 15:46:06,148 | INFO     | job summary report
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | --------------------------------------------------
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | PanDA job id: 7043586445
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | task id: 48955006
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | errors: (none)
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | pilot state: finished 
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | transexitcode: 0
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | exeerrorcode: 0
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | exeerrordiag: 
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | exitcode: 0
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | exitmsg: OK
[2026-03-13 16:47:03] 2026-03-13 15:46:06,149 | INFO     | cpuconsumptiontime: 48305 s
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | nevents: 400
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | neventsw: 0
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | pid: 29890
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | pgrp: 29890
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | corecount: 8
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | event service: False
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | sizes: {0: 2279142, 1: 2279827, 2: 2280288, 12: 2280288, 12676: 2310291, 12677: 2310290, 12680: 2319528, 12683: 2319666}
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | --------------------------------------------------
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | 
[2026-03-13 16:47:03] 2026-03-13 15:46:06,150 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-03-13 16:47:03] 2026-03-13 15:46:06,516 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,516 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,516 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,517 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 16:47:03] 2026-03-13 15:46:06,518 | INFO     | job 7043586445 has completed (purged errors)
[2026-03-13 16:47:03] 2026-03-13 15:46:06,519 | INFO     | overall cleanup function is called
[2026-03-13 16:47:03] 2026-03-13 15:46:07,527 | INFO     | --- collectZombieJob: --- 10, [29890]
[2026-03-13 16:47:03] 2026-03-13 15:46:07,527 | INFO     | zombie collector waiting for pid 29890
[2026-03-13 16:47:03] 2026-03-13 15:46:07,528 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 16:47:03] 2026-03-13 15:46:07,528 | INFO     | collected zombie processes
[2026-03-13 16:47:03] 2026-03-13 15:46:07,528 | INFO     | will attempt to kill all subprocesses of pid=29890
[2026-03-13 16:47:03] 2026-03-13 15:46:07,625 | INFO     | process IDs to be killed: [29890] (in reverse order)
[2026-03-13 16:47:03] 2026-03-13 15:46:08,400 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 16:47:03] 2026-03-13 15:46:08,400 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 16:47:03] 2026-03-13 15:46:08,403 | INFO     | did not find any defunct processes belonging to 29890
[2026-03-13 16:47:03] 2026-03-13 15:46:08,406 | INFO     | did not find any defunct processes belonging to 29890
[2026-03-13 16:47:03] 2026-03-13 15:46:08,406 | INFO     | ready for new job
[2026-03-13 16:47:03] 2026-03-13 15:46:08,406 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 16:47:03] 2026-03-13 15:46:08,408 | INFO     | **************************************
[2026-03-13 16:47:03] 2026-03-13 15:46:08,408 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 16:47:03] 2026-03-13 15:46:08,408 | INFO     | **************************************
[2026-03-13 16:47:03] 2026-03-13 15:46:08,408 | INFO     | 
[2026-03-13 16:47:03] 2026-03-13 15:46:08,409 | INFO     | pilot is running in a VM
[2026-03-13 16:47:03] 2026-03-13 15:46:08,409 | INFO     | architecture information:
[2026-03-13 16:47:03] 2026-03-13 15:46:08,417 | INFO     | executing command: cat /etc/os-release
[2026-03-13 16:47:03] 2026-03-13 15:46:08,571 | INFO     | cat /etc/os-release:
[2026-03-13 16:47:03] NAME="CentOS Linux"
[2026-03-13 16:47:03] VERSION="7 (Core)"
[2026-03-13 16:47:03] ID="centos"
[2026-03-13 16:47:03] ID_LIKE="rhel fedora"
[2026-03-13 16:47:03] VERSION_ID="7"
[2026-03-13 16:47:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 16:47:03] ANSI_COLOR="0;31"
[2026-03-13 16:47:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 16:47:03] HOME_URL="https://www.centos.org/"
[2026-03-13 16:47:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 16:47:03] 
[2026-03-13 16:47:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 16:47:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 16:47:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 16:47:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 16:47:03] 
[2026-03-13 16:47:03] 2026-03-13 15:46:08,571 | INFO     | **************************************
[2026-03-13 16:47:03] 2026-03-13 15:46:09,074 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-03-13 16:47:03] 2026-03-13 15:46:09,281 | INFO     | sufficient remaining disk space (496629710848 B)
[2026-03-13 16:47:03] 2026-03-13 15:46:09,281 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 16:47:03] 2026-03-13 15:46:09,281 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 16:47:03] 2026-03-13 15:46:09,281 | INFO     | update_server=False
[2026-03-13 16:47:03] 2026-03-13 15:46:09,282 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 16:47:03] 2026-03-13 15:46:09,282 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 16:47:03] 2026-03-13 15:46:09,373 | INFO     | all job control threads have been joined
[2026-03-13 16:47:03] 2026-03-13 15:46:09,393 | INFO     | all data control threads have been joined
[2026-03-13 16:47:03] 2026-03-13 15:46:09,556 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-03-13 16:47:03] 2026-03-13 15:46:09,556 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-03-13 16:47:03] 2026-03-13 15:46:09,557 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:47:03] 2026-03-13 15:46:09,557 | INFO     | will abort loop
[2026-03-13 16:47:03] 2026-03-13 15:46:09,559 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 16:47:03] 2026-03-13 15:46:09,810 | INFO     | all payload control threads have been joined
[2026-03-13 16:47:03] 2026-03-13 15:46:10,287 | INFO     | [job] retrieve thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,379 | INFO     | [job] control thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,399 | INFO     | [data] control thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,454 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,504 | INFO     | [payload] failed_post thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,516 | INFO     | [job] validate thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,562 | INFO     | [job] job monitor thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,601 | INFO     | [payload] validate_post thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,817 | INFO     | [payload] control thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:10,973 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 16:47:03] 2026-03-13 15:46:11,219 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:11,289 | INFO     | [data] copytool_out thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:11,409 | INFO     | [data] copytool_in thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:11,435 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:11,746 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:11,979 | INFO     | [job] queue monitor thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:13,570 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 16:47:03] 2026-03-13 15:46:38,203 | INFO     | PID=25365 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 16:47:03] 2026-03-13 15:46:38,204 | INFO     | .. there are 9 such processes running
[2026-03-13 16:47:03] 2026-03-13 15:46:38,205 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 16:47:03] 2026-03-13 15:46:38,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 16:47:03] 2026-03-13 15:46:38,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 16:47:03] 2026-03-13 15:46:52,550 | INFO     | [monitor] cgroup control has ended
[2026-03-13 16:47:03] 2026-03-13 15:46:54,189 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140344271185728)>', '<ExcThread(monitor, started 140343693539072)>']
[2026-03-13 16:47:03] 2026-03-13 15:46:54,300 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 16:47:03] 2026-03-13 15:46:54,300 | INFO     | [monitor] control thread has ended
[2026-03-13 16:47:03] 2026-03-13 15:46:59,215 | INFO     | all workflow threads have been joined
[2026-03-13 16:47:03] 2026-03-13 15:46:59,215 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 16:47:03] 2026-03-13 15:46:59,216 | INFO     | traces error code: 0
[2026-03-13 16:47:03] 2026-03-13 15:46:59,216 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 16:47:03] 2026-03-13 15:46:59,672 [wrapper] ==== pilot stdout END ====
[2026-03-13 16:47:03] 2026-03-13 15:46:59,763 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 16:47:03] 2026-03-13 15:46:59,854 [wrapper] pilotpid: 25365
[2026-03-13 16:47:03] 2026-03-13 15:46:59,945 [wrapper] Pilot exit status: 0
[2026-03-13 16:47:03] 2026-03-13 15:47:00,253 [wrapper] pandaids: 7043586445
[2026-03-13 16:47:03] 2026-03-13 15:47:00,288 [wrapper] cleanup supervisor_pilot  5260 25366
[2026-03-13 16:47:03] 2026-03-13 15:47:00,301 [wrapper] Test setup, not cleaning
[2026-03-13 16:47:03] 2026-03-13 15:47:00,419 [wrapper] apfmon messages muted
[2026-03-13 16:47:03] 2026-03-13 15:47:00,517 [wrapper] ==== wrapper stdout END ====
[2026-03-13 16:47:03] 2026-03-13 15:47:00,607 [wrapper] ==== wrapper stderr END ====
[2026-03-13 16:47:03]  *** Error codes and diagnostics ***
[2026-03-13 16:47:03]     "exeErrorCode": 0,
[2026-03-13 16:47:03]     "exeErrorDiag": "",
[2026-03-13 16:47:03]     "pilotErrorCode": 0,
[2026-03-13 16:47:03]     "pilotErrorDiag": "",
[2026-03-13 16:47:03]  *** Listing of results directory ***
[2026-03-13 16:47:03] total 615008
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc    585013 Mar 12 22:12 pilot3.tar.gz
[2026-03-13 16:47:03] -rwx------. 1 boinc boinc     36322 Mar 12 22:13 runpilot2-wrapper.sh
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc      5111 Mar 12 22:15 queuedata.json
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc       100 Mar 13 13:09 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 16:47:03] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 13:09 run_atlas
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc       105 Mar 13 13:09 job.xml
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc      6391 Mar 13 13:09 init_data.xml
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc 436168292 Mar 13 13:09 EVNT.46701403._000954.pool.root.1
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc     15845 Mar 13 13:09 start_atlas.sh
[2026-03-13 16:47:03] drwxrwx--x. 2 boinc boinc        68 Mar 13 13:09 shared
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc    597530 Mar 13 13:09 input.tar.gz
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc         0 Mar 13 13:09 boinc_lockfile
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc      2565 Mar 13 13:09 pandaJob.out
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc       415 Mar 13 13:14 workernode_map.json
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc   1006495 Mar 13 13:14 agis_schedconf.cvmfs.json
[2026-03-13 16:47:03] drwx------. 5 boinc boinc      4096 Mar 13 13:14 pilot3
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc 185206083 Mar 13 16:44 HITS.48955006._048195.pool.root.1
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc       531 Mar 13 16:45 boinc_task_state.xml
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc      1013 Mar 13 16:45 memory_monitor_summary.json
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc   1511578 Mar 13 16:46 agis_ddmendpoints.agis.ALL.json
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc    455674 Mar 13 16:46 log.48955006._048195.job.log.tgz.1
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc      6329 Mar 13 16:46 heartbeat.json
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc        95 Mar 13 16:46 pilot_heartbeat.json
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc      5066 Mar 13 16:46 pilotlog.txt
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc   1780711 Mar 13 16:47 log.48955006._048195.job.log.1
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc      8192 Mar 13 16:47 boinc_mmap_file
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc        28 Mar 13 16:47 wrapper_checkpoint.txt
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc       357 Mar 13 16:47 output.list
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc       620 Mar 13 16:47 runtime_log
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc   2252800 Mar 13 16:47 result.tar.gz
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc       655 Mar 13 16:47 zX4LDmnW2K9n9Rq4apOajLDm4fhM0noT9bVooX4SDmAMlLDm5W7YUo.diag
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc      8816 Mar 13 16:47 runtime_log.err
[2026-03-13 16:47:03] -rw-r--r--. 1 boinc boinc     20726 Mar 13 16:47 stderr.txt
[2026-03-13 16:47:03] HITS file was successfully produced:
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc 185206083 Mar 13 16:44 shared/HITS.pool.root.1
[2026-03-13 16:47:03]  *** Contents of shared directory: ***
[2026-03-13 16:47:03] total 609616
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc 436168292 Mar 13 13:09 ATLAS.root_0
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc     15845 Mar 13 13:09 start_atlas.sh
[2026-03-13 16:47:03] -rw-r--r--. 2 boinc boinc    597530 Mar 13 13:09 input.tar.gz
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc 185206083 Mar 13 16:44 HITS.pool.root.1
[2026-03-13 16:47:03] -rw-------. 1 boinc boinc   2252800 Mar 13 16:47 result.tar.gz
16:47:05 (21290): run_atlas exited; CPU time 48484.935194
16:47:05 (21290): called boinc_finish(0)

</stderr_txt>
]]>

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