Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:48:09 (7753): wrapper (7.7.26015): starting
18:48:09 (7753): wrapper: running run_atlas (--nthreads 8)
[2026-03-13 18:48:09] Arguments: --nthreads 8
[2026-03-13 18:48:09] Threads: 8
[2026-03-13 18:48:09] Checking for CVMFS
[2026-03-13 18:48:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 18:48:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 18:48:10] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 18:48:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 18:48:10] 2.11.2.0 23879 126454 129288 157249 2 118 25093977 25165824 687 130560 157 32670810 99.798 26976804 850 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-03-13 18:48:10] CVMFS is ok
[2026-03-13 18:48:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 18:48:10] Checking for apptainer binary...
[2026-03-13 18:48:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 18:48:10] Running /usr/bin/apptainer --version
[2026-03-13 18:48:10] apptainer version 1.3.2-1.el7
[2026-03-13 18:48:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 18:48:12] cg-vwn385.simple-grid.lan
[2026-03-13 18:48:12] apptainer works
[2026-03-13 18:48:12] Set ATHENA_PROC_NUMBER=8
[2026-03-13 18:48:12] Set ATHENA_CORE_NUMBER=8
[2026-03-13 18:48:12] Starting ATLAS job with PandaID=7052936279
[2026-03-13 18:48:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-13 23:25:17]  *** The last 200 lines of the pilot log: ***
[2026-03-13 23:25:17] 2026-03-13 22:24:16,919 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-7052936279/memory_monitor_summary.json (trf name=prmon)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,920 | INFO     | extracted standard info from prmon json
[2026-03-13 23:25:17] 2026-03-13 22:24:16,920 | INFO     | extracted standard memory fields from prmon json
[2026-03-13 23:25:17] 2026-03-13 22:24:16,920 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-03-13 23:25:17] 2026-03-13 22:24:16,921 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-03-13 23:25:17] 2026-03-13 22:24:16,921 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-03-13 23:25:17] 2026-03-13 22:24:16,927 | INFO     | fitting pss+swap vs Time
[2026-03-13 23:25:17] 2026-03-13 22:24:16,928 | INFO     | sum of square deviations: 6171352920.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,930 | INFO     | sum of deviations: -1117384396.999998
[2026-03-13 23:25:17] 2026-03-13 22:24:16,930 | INFO     | mean x: 1773432384.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,931 | INFO     | mean y: 2489050.5498154983
[2026-03-13 23:25:17] 2026-03-13 22:24:16,931 | INFO     | intersect: 323586498.8247569
[2026-03-13 23:25:17] 2026-03-13 22:24:16,931 | INFO     | chi2: 2.364259710202627
[2026-03-13 23:25:17] 2026-03-13 22:24:16,932 | INFO     | sum of square deviations: 5836025702.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,934 | INFO     | sum of deviations: 16773214469.000011
[2026-03-13 23:25:17] 2026-03-13 22:24:16,934 | INFO     | mean x: 1773432231.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,934 | INFO     | mean y: 2497065.360902256
[2026-03-13 23:25:17] 2026-03-13 22:24:16,935 | INFO     | intersect: -5094491995.609872
[2026-03-13 23:25:17] 2026-03-13 22:24:16,935 | INFO     | chi2: 1.5985854559202135
[2026-03-13 23:25:17] 2026-03-13 22:24:16,935 | INFO     | current chi2=1.5985854559202135 (change=32.385369973453216 %)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,936 | INFO     | sum of square deviations: 5513070810.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,938 | INFO     | sum of deviations: 16401463694.000006
[2026-03-13 23:25:17] 2026-03-13 22:24:16,938 | INFO     | mean x: 1773432079.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,939 | INFO     | mean y: 2496889.8007662836
[2026-03-13 23:25:17] 2026-03-13 22:24:16,939 | INFO     | intersect: -5273488647.104291
[2026-03-13 23:25:17] 2026-03-13 22:24:16,939 | INFO     | chi2: 1.599092223679594
[2026-03-13 23:25:17] 2026-03-13 22:24:16,939 | INFO     | current chi2=1.599092223679594 (change=-0.03170101151012249 %)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,939 | INFO     | right removable region: 260
[2026-03-13 23:25:17] 2026-03-13 22:24:16,940 | INFO     | sum of square deviations: 5836025702.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,942 | INFO     | sum of deviations: -41388877712.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,943 | INFO     | mean x: 1773432536.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,943 | INFO     | mean y: 2507202.962406015
[2026-03-13 23:25:17] 2026-03-13 22:24:16,943 | INFO     | intersect: 12579624941.192667
[2026-03-13 23:25:17] 2026-03-13 22:24:16,943 | INFO     | chi2: 0.9336865217456147
[2026-03-13 23:25:17] 2026-03-13 22:24:16,944 | INFO     | current chi2=0.9336865217456147 (change=60.50829281925234 %)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,944 | INFO     | sum of square deviations: 5513070810.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,950 | INFO     | sum of deviations: -38878101852.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,950 | INFO     | mean x: 1773432689.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,950 | INFO     | mean y: 2505991.3946360154
[2026-03-13 23:25:17] 2026-03-13 22:24:16,950 | INFO     | intersect: 12508729670.863075
[2026-03-13 23:25:17] 2026-03-13 22:24:16,951 | INFO     | chi2: 0.9200559273185978
[2026-03-13 23:25:17] 2026-03-13 22:24:16,951 | INFO     | current chi2=0.9200559273185978 (change=1.459868393680279 %)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,951 | INFO     | left removable region: 20
[2026-03-13 23:25:17] 2026-03-13 22:24:16,951 | INFO     | sum of square deviations: 4286517580.0
[2026-03-13 23:25:17] 2026-03-13 22:24:16,953 | INFO     | sum of deviations: -2429453923.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,954 | INFO     | mean x: 1773432658.5
[2026-03-13 23:25:17] 2026-03-13 22:24:16,954 | INFO     | mean y: 2504932.2875
[2026-03-13 23:25:17] 2026-03-13 22:24:16,954 | INFO     | intersect: 1007626887.3118536
[2026-03-13 23:25:17] 2026-03-13 22:24:16,954 | INFO     | chi2: 0.060013911379858544
[2026-03-13 23:25:17] 2026-03-13 22:24:16,954 | INFO     | current memory leak: -0.57 B/s (using 240 data points, chi2=0.06)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,955 | INFO     | could have reported an average CPU frequency of 1999 MHz (13 samples)
[2026-03-13 23:25:17] 2026-03-13 22:24:16,955 | INFO     | ..............................
[2026-03-13 23:25:17] 2026-03-13 22:24:16,955 | INFO     | . Timing measurements:
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . get job = 0 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . initial setup = 8 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . payload setup = 9 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . stage-in = 0 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . payload execution = 16503 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . stage-out = 3 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | . log creation = 1 s
[2026-03-13 23:25:17] 2026-03-13 22:24:16,956 | INFO     | ..............................
[2026-03-13 23:25:17] 2026-03-13 22:24:17,088 | INFO     | 
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | job summary report
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | --------------------------------------------------
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | PanDA job id: 7052936279
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | task id: 48967085
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | errors: (none)
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | pilot state: finished 
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | transexitcode: 0
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | exeerrorcode: 0
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | exeerrordiag: 
[2026-03-13 23:25:17] 2026-03-13 22:24:17,089 | INFO     | exitcode: 0
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | exitmsg: OK
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | cpuconsumptiontime: 72492 s
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | nevents: 400
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | neventsw: 0
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | pid: 16054
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | pgrp: 16054
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | corecount: 8
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | event service: False
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | sizes: {0: 2280035, 1: 2280241, 11: 2280269, 16517: 2312030, 16521: 2321030, 16524: 2321086, 16527: 2321408}
[2026-03-13 23:25:17] 2026-03-13 22:24:17,090 | INFO     | --------------------------------------------------
[2026-03-13 23:25:17] 2026-03-13 22:24:17,091 | INFO     | 
[2026-03-13 23:25:17] 2026-03-13 22:24:17,091 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-03-13 23:25:17] 2026-03-13 22:24:17,399 | INFO     | time since job start (16539s) is within the limit (345600.0s)
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue jobs had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue data_in had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue data_out had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,623 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,624 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | job 7052936279 has completed (purged errors)
[2026-03-13 23:25:17] 2026-03-13 22:24:17,625 | INFO     | overall cleanup function is called
[2026-03-13 23:25:17] 2026-03-13 22:24:18,500 | INFO     | PID=11627 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 23:25:17] 2026-03-13 22:24:18,500 | INFO     | .. there are 2 such processes running
[2026-03-13 23:25:17] 2026-03-13 22:24:18,634 | INFO     | --- collectZombieJob: --- 10, [16054]
[2026-03-13 23:25:17] 2026-03-13 22:24:18,635 | INFO     | zombie collector waiting for pid 16054
[2026-03-13 23:25:17] 2026-03-13 22:24:18,635 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-13 23:25:17] 2026-03-13 22:24:18,635 | INFO     | collected zombie processes
[2026-03-13 23:25:17] 2026-03-13 22:24:18,635 | INFO     | will attempt to kill all subprocesses of pid=16054
[2026-03-13 23:25:17] 2026-03-13 22:24:18,710 | INFO     | process IDs to be killed: [16054] (in reverse order)
[2026-03-13 23:25:17] 2026-03-13 22:24:19,494 | WARNING  | found no corresponding commands to process id(s)
[2026-03-13 23:25:17] 2026-03-13 22:24:19,494 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-13 23:25:17] 2026-03-13 22:24:19,496 | INFO     | did not find any defunct processes belonging to 16054
[2026-03-13 23:25:17] 2026-03-13 22:24:19,498 | INFO     | did not find any defunct processes belonging to 16054
[2026-03-13 23:25:17] 2026-03-13 22:24:19,498 | INFO     | ready for new job
[2026-03-13 23:25:17] 2026-03-13 22:24:19,498 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-13 23:25:17] 2026-03-13 22:24:19,501 | INFO     | **************************************
[2026-03-13 23:25:17] 2026-03-13 22:24:19,501 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-13 23:25:17] 2026-03-13 22:24:19,501 | INFO     | **************************************
[2026-03-13 23:25:17] 2026-03-13 22:24:19,501 | INFO     | 
[2026-03-13 23:25:17] 2026-03-13 22:24:19,502 | INFO     | pilot is running in a VM
[2026-03-13 23:25:17] 2026-03-13 22:24:19,502 | INFO     | architecture information:
[2026-03-13 23:25:17] 2026-03-13 22:24:19,515 | INFO     | executing command: cat /etc/os-release
[2026-03-13 23:25:17] 2026-03-13 22:24:19,714 | INFO     | cat /etc/os-release:
[2026-03-13 23:25:17] NAME="CentOS Linux"
[2026-03-13 23:25:17] VERSION="7 (Core)"
[2026-03-13 23:25:17] ID="centos"
[2026-03-13 23:25:17] ID_LIKE="rhel fedora"
[2026-03-13 23:25:17] VERSION_ID="7"
[2026-03-13 23:25:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-13 23:25:17] ANSI_COLOR="0;31"
[2026-03-13 23:25:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-13 23:25:17] HOME_URL="https://www.centos.org/"
[2026-03-13 23:25:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-13 23:25:17] 
[2026-03-13 23:25:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-13 23:25:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-13 23:25:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-13 23:25:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-13 23:25:17] 
[2026-03-13 23:25:17] 2026-03-13 22:24:19,714 | INFO     | **************************************
[2026-03-13 23:25:17] 2026-03-13 22:24:20,217 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-03-13 23:25:17] 2026-03-13 22:24:20,405 | INFO     | sufficient remaining disk space (495501443072 B)
[2026-03-13 23:25:17] 2026-03-13 22:24:20,405 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-13 23:25:17] 2026-03-13 22:24:20,405 | INFO     | current server update state: UPDATING_FINAL
[2026-03-13 23:25:17] 2026-03-13 22:24:20,406 | INFO     | update_server=False
[2026-03-13 23:25:17] 2026-03-13 22:24:20,406 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-13 23:25:17] 2026-03-13 22:24:20,408 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-13 23:25:17] 2026-03-13 22:24:20,409 | INFO     | aborting loop
[2026-03-13 23:25:17] 2026-03-13 22:24:20,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-13 23:25:17] 2026-03-13 22:24:20,696 | INFO     | all job control threads have been joined
[2026-03-13 23:25:17] 2026-03-13 22:24:20,945 | INFO     | all data control threads have been joined
[2026-03-13 23:25:17] 2026-03-13 22:24:21,411 | INFO     | [job] retrieve thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:21,414 | INFO     | [job] job monitor thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:21,463 | INFO     | [payload] execute_payloads thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:21,653 | INFO     | all payload control threads have been joined
[2026-03-13 23:25:17] 2026-03-13 22:24:21,702 | INFO     | [job] control thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:21,897 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-13 23:25:17] 2026-03-13 22:24:21,913 | INFO     | [payload] failed_post thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:21,951 | INFO     | [data] control thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,104 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-13 23:25:17] 2026-03-13 22:24:22,208 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,287 | INFO     | [data] copytool_in thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,399 | INFO     | [payload] validate_pre thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,482 | INFO     | [payload] validate_post thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,659 | INFO     | [payload] control thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,791 | INFO     | [job] create_data_payload thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:22,830 | INFO     | [job] validate thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:23,110 | INFO     | [job] queue monitor thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:23,904 | INFO     | [data] copytool_out thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:24,516 | INFO     | [data] queue_monitor thread has finished
[2026-03-13 23:25:17] 2026-03-13 22:24:50,641 | INFO     | PID=11627 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-03-13 23:25:17] 2026-03-13 22:24:50,642 | INFO     | .. there are 2 such processes running
[2026-03-13 23:25:17] 2026-03-13 22:24:50,642 | INFO     | found 0 job(s) in 20 queues
[2026-03-13 23:25:17] 2026-03-13 22:24:50,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-13 23:25:17] 2026-03-13 22:24:50,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-13 23:25:17] 2026-03-13 22:25:06,537 | INFO     | [monitor] cgroup control has ended
[2026-03-13 23:25:17] 2026-03-13 22:25:08,193 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139976007063360)>', '<ExcThread(monitor, started 139975551063808)>']
[2026-03-13 23:25:17] 2026-03-13 22:25:08,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-13 23:25:17] 2026-03-13 22:25:08,751 | INFO     | [monitor] control thread has ended
[2026-03-13 23:25:17] 2026-03-13 22:25:13,219 | INFO     | all workflow threads have been joined
[2026-03-13 23:25:17] 2026-03-13 22:25:13,220 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-13 23:25:17] 2026-03-13 22:25:13,220 | INFO     | traces error code: 0
[2026-03-13 23:25:17] 2026-03-13 22:25:13,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-13 23:25:17] 2026-03-13 22:25:13,391 [wrapper] ==== pilot stdout END ====
[2026-03-13 23:25:17] 2026-03-13 22:25:13,397 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-13 23:25:17] 2026-03-13 22:25:13,406 [wrapper] pilotpid: 11627
[2026-03-13 23:25:17] 2026-03-13 22:25:13,449 [wrapper] Pilot exit status: 0
[2026-03-13 23:25:17] 2026-03-13 22:25:13,560 [wrapper] pandaids: 7052936279
[2026-03-13 23:25:17] 2026-03-13 22:25:14,490 [wrapper] cleanup supervisor_pilot  9865 11628
[2026-03-13 23:25:17] 2026-03-13 22:25:14,641 [wrapper] Test setup, not cleaning
[2026-03-13 23:25:17] 2026-03-13 22:25:14,768 [wrapper] apfmon messages muted
[2026-03-13 23:25:17] 2026-03-13 22:25:14,870 [wrapper] ==== wrapper stdout END ====
[2026-03-13 23:25:17] 2026-03-13 22:25:14,901 [wrapper] ==== wrapper stderr END ====
[2026-03-13 23:25:17]  *** Error codes and diagnostics ***
[2026-03-13 23:25:17]     "exeErrorCode": 0,
[2026-03-13 23:25:17]     "exeErrorDiag": "",
[2026-03-13 23:25:17]     "pilotErrorCode": 0,
[2026-03-13 23:25:17]     "pilotErrorDiag": "",
[2026-03-13 23:25:17]  *** Listing of results directory ***
[2026-03-13 23:25:17] total 417888
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc    585013 Mar 13 05:05 pilot3.tar.gz
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc      5111 Mar 13 05:09 queuedata.json
[2026-03-13 23:25:17] -rwx------. 1 boinc boinc     36322 Mar 13 05:09 runpilot2-wrapper.sh
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc       100 Mar 13 18:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-13 23:25:17] -rwxr-xr-x. 1 boinc boinc      7986 Mar 13 18:48 run_atlas
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc       105 Mar 13 18:48 job.xml
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc      6392 Mar 13 18:48 init_data.xml
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc 213987889 Mar 13 18:48 EVNT.48967083._000679.pool.root.1
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc     15845 Mar 13 18:48 start_atlas.sh
[2026-03-13 23:25:17] drwxrwx--x. 2 boinc boinc        68 Mar 13 18:48 shared
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc    597519 Mar 13 18:48 input.tar.gz
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc         0 Mar 13 18:48 boinc_lockfile
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc      2562 Mar 13 18:48 pandaJob.out
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc   1006589 Mar 13 18:48 agis_schedconf.cvmfs.json
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc       415 Mar 13 18:48 workernode_map.json
[2026-03-13 23:25:17] drwx------. 5 boinc boinc      4096 Mar 13 18:48 pilot3
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc 204409046 Mar 13 23:22 HITS.48967085._018255.pool.root.1
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc       530 Mar 13 23:23 boinc_task_state.xml
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc        95 Mar 13 23:23 pilot_heartbeat.json
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc      1020 Mar 13 23:24 memory_monitor_summary.json
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc   1511579 Mar 13 23:24 agis_ddmendpoints.agis.ALL.json
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc    479088 Mar 13 23:24 log.48967085._018255.job.log.tgz.1
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc      6319 Mar 13 23:24 heartbeat.json
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc      8192 Mar 13 23:25 boinc_mmap_file
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc        28 Mar 13 23:25 wrapper_checkpoint.txt
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc      4881 Mar 13 23:25 pilotlog.txt
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc   2318945 Mar 13 23:25 log.48967085._018255.job.log.1
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc       357 Mar 13 23:25 output.list
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc       620 Mar 13 23:25 runtime_log
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc   2816000 Mar 13 23:25 result.tar.gz
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc      8832 Mar 13 23:25 runtime_log.err
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc       655 Mar 13 23:25 AUfKDmM18K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuaoLDmZWAgQm.diag
[2026-03-13 23:25:17] -rw-r--r--. 1 boinc boinc     20814 Mar 13 23:25 stderr.txt
[2026-03-13 23:25:17] HITS file was successfully produced:
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc 204409046 Mar 13 23:22 shared/HITS.pool.root.1
[2026-03-13 23:25:17]  *** Contents of shared directory: ***
[2026-03-13 23:25:17] total 411948
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc 213987889 Mar 13 18:48 ATLAS.root_0
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc     15845 Mar 13 18:48 start_atlas.sh
[2026-03-13 23:25:17] -rw-r--r--. 2 boinc boinc    597519 Mar 13 18:48 input.tar.gz
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc 204409046 Mar 13 23:22 HITS.pool.root.1
[2026-03-13 23:25:17] -rw-------. 1 boinc boinc   2816000 Mar 13 23:25 result.tar.gz
23:25:19 (7753): run_atlas exited; CPU time 72652.326003
23:25:19 (7753): called boinc_finish(0)

</stderr_txt>
]]>

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