Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:43:54 (3777062): wrapper (7.7.26015): starting
23:43:54 (3777062): wrapper: running run_atlas (--nthreads 3)
[2026-03-13 23:43:54] Arguments: --nthreads 3
[2026-03-13 23:43:54] Threads: 3
[2026-03-13 23:43:54] Checking for CVMFS
[2026-03-13 23:43:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-03-13 23:43:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-03-13 23:43:54] Running cvmfs_config stat atlas.cern.ch
[2026-03-13 23:43:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-03-13 23:43:55] 2.9.2.0 3667146 286 54484 157256 1 50 25008846 36864001 0 130560 0 115190 99.990 9370 24722 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-03-13 23:43:55] CVMFS is ok
[2026-03-13 23:43:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-03-13 23:43:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-03-13 23:43:55] Further information can be found at the LHC@home message board.
[2026-03-13 23:43:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-03-13 23:43:55] Checking for apptainer binary...
[2026-03-13 23:43:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-03-13 23:43:55] Running /usr/bin/apptainer --version
[2026-03-13 23:43:55] apptainer version 1.4.1-1.1
[2026-03-13 23:43:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-03-13 23:43:55] atlasA221b
[2026-03-13 23:43:55] apptainer works
[2026-03-13 23:43:55] Set ATHENA_PROC_NUMBER=3
[2026-03-13 23:43:55] Set ATHENA_CORE_NUMBER=3
[2026-03-13 23:43:55] Starting ATLAS job with PandaID=7052864322
[2026-03-13 23:43:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-03-14 01:38:31]  *** The last 200 lines of the pilot log: ***
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue completed_jobids has 1 job(s)
[2026-03-14 01:38:31] 2026-03-14 00:37:58,919 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,920 | INFO     | queue messages had 0 job(s) [purged]
[2026-03-14 01:38:31] 2026-03-14 00:37:58,920 | INFO     | job 7052864322 has completed (purged errors)
[2026-03-14 01:38:31] 2026-03-14 00:37:58,920 | INFO     | overall cleanup function is called
[2026-03-14 01:38:31] 2026-03-14 00:37:59,926 | INFO     | --- collectZombieJob: --- 10, [3785647]
[2026-03-14 01:38:31] 2026-03-14 00:37:59,926 | INFO     | zombie collector waiting for pid 3785647
[2026-03-14 01:38:31] 2026-03-14 00:37:59,927 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-03-14 01:38:31] 2026-03-14 00:37:59,927 | INFO     | collected zombie processes
[2026-03-14 01:38:31] 2026-03-14 00:37:59,927 | INFO     | will attempt to kill all subprocesses of pid=3785647
[2026-03-14 01:38:31] 2026-03-14 00:37:59,991 | INFO     | process IDs to be killed: [3785647] (in reverse order)
[2026-03-14 01:38:31] 2026-03-14 00:38:00,023 | WARNING  | found no corresponding commands to process id(s)
[2026-03-14 01:38:31] 2026-03-14 00:38:00,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-03-14 01:38:31] 2026-03-14 00:38:00,025 | INFO     | did not find any defunct processes belonging to 3785647
[2026-03-14 01:38:31] 2026-03-14 00:38:00,027 | INFO     | did not find any defunct processes belonging to 3785647
[2026-03-14 01:38:31] 2026-03-14 00:38:00,027 | INFO     | ready for new job
[2026-03-14 01:38:31] 2026-03-14 00:38:00,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | **************************************
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | ***  PanDA Pilot version 3.11.5.1  ***
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | **************************************
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | 
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | architecture information:
[2026-03-14 01:38:31] 2026-03-14 00:38:00,028 | INFO     | executing command: cat /etc/os-release
[2026-03-14 01:38:31] 2026-03-14 00:38:00,040 | INFO     | cat /etc/os-release:
[2026-03-14 01:38:31] NAME="CentOS Linux"
[2026-03-14 01:38:31] VERSION="7 (Core)"
[2026-03-14 01:38:31] ID="centos"
[2026-03-14 01:38:31] ID_LIKE="rhel fedora"
[2026-03-14 01:38:31] VERSION_ID="7"
[2026-03-14 01:38:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-03-14 01:38:31] ANSI_COLOR="0;31"
[2026-03-14 01:38:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-03-14 01:38:31] HOME_URL="https://www.centos.org/"
[2026-03-14 01:38:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-03-14 01:38:31] 
[2026-03-14 01:38:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-03-14 01:38:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-03-14 01:38:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-03-14 01:38:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-03-14 01:38:31] 
[2026-03-14 01:38:31] 2026-03-14 00:38:00,040 | INFO     | **************************************
[2026-03-14 01:38:31] 2026-03-14 00:38:00,542 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | INFO     | sufficient remaining disk space (334221017088 B)
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | INFO     | current server update state: UPDATING_FINAL
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | INFO     | update_server=False
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-03-14 01:38:31] 2026-03-14 00:38:00,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-03-14 01:38:31] 2026-03-14 00:38:00,810 | INFO     | all data control threads have been joined
[2026-03-14 01:38:31] 2026-03-14 00:38:00,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-03-14 01:38:31] 2026-03-14 00:38:00,871 | INFO     | aborting loop
[2026-03-14 01:38:31] 2026-03-14 00:38:01,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-03-14 01:38:31] 2026-03-14 00:38:01,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-03-14 01:38:31] 2026-03-14 00:38:01,554 | INFO     | [job] queue monitor thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:01,558 | INFO     | [job] retrieve thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:01,683 | INFO     | all payload control threads have been joined
[2026-03-14 01:38:31] 2026-03-14 00:38:01,713 | INFO     | all job control threads have been joined
[2026-03-14 01:38:31] 2026-03-14 00:38:01,815 | INFO     | [data] control thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:01,877 | INFO     | [job] job monitor thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,080 | INFO     | [payload] validate_post thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,413 | INFO     | [payload] validate_pre thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,418 | INFO     | [job] create_data_payload thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,439 | INFO     | [job] validate thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,601 | INFO     | [data] copytool_in thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,686 | INFO     | [payload] control thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,719 | INFO     | [job] control thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:02,926 | INFO     | [payload] failed_post thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:03,053 | INFO     | [payload] execute_payloads thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:03,437 | INFO     | [data] copytool_out thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:05,417 | INFO     | [data] queue_monitor thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:10,661 | INFO     | job.realtimelogging is not enabled
[2026-03-14 01:38:31] 2026-03-14 00:38:11,666 | INFO     | [payload] run_realtimelog thread has finished
[2026-03-14 01:38:31] 2026-03-14 00:38:17,618 | INFO     | [monitor] cgroup control has ended
[2026-03-14 01:38:31] 2026-03-14 00:38:18,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140257106327360)>', '<ExcThread(monitor, started 140256242296576)>']
[2026-03-14 01:38:31] 2026-03-14 00:38:23,102 | INFO     | all workflow threads have been joined
[2026-03-14 01:38:31] 2026-03-14 00:38:23,102 | INFO     | end of generic workflow (traces error code: 0)
[2026-03-14 01:38:31] 2026-03-14 00:38:23,102 | INFO     | traces error code: 0
[2026-03-14 01:38:31] 2026-03-14 00:38:23,102 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | INFO     | PID=3781140 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | INFO     | found 0 job(s) in 20 queues
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-03-14 01:38:31] 2026-03-14 00:38:31,279 | INFO     | [monitor] control thread has ended
[2026-03-14 01:38:31] 2026-03-14 00:38:31,331 [wrapper] ==== pilot stdout END ====
[2026-03-14 01:38:31] 2026-03-14 00:38:31,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-03-14 01:38:31] 2026-03-14 00:38:31,336 [wrapper] pilotpid: 3781140
[2026-03-14 01:38:31] 2026-03-14 00:38:31,339 [wrapper] Pilot exit status: 0
[2026-03-14 01:38:31] 2026-03-14 00:38:31,347 [wrapper] pandaids: 7052864322
[2026-03-14 01:38:31] 2026-03-14 00:38:31,367 [wrapper] cleanup supervisor_pilot 3816700 3781141
[2026-03-14 01:38:31] 2026-03-14 00:38:31,370 [wrapper] Test setup, not cleaning
[2026-03-14 01:38:31] 2026-03-14 00:38:31,373 [wrapper] apfmon messages muted
[2026-03-14 01:38:31] 2026-03-14 00:38:31,375 [wrapper] ==== wrapper stdout END ====
[2026-03-14 01:38:31] 2026-03-14 00:38:31,378 [wrapper] ==== wrapper stderr END ====
[2026-03-14 01:38:31]  *** Error codes and diagnostics ***
[2026-03-14 01:38:31]     "exeErrorCode": 0,
[2026-03-14 01:38:31]     "exeErrorDiag": "",
[2026-03-14 01:38:31]     "pilotErrorCode": 0,
[2026-03-14 01:38:31]     "pilotErrorDiag": "",
[2026-03-14 01:38:31]  *** Listing of results directory ***
[2026-03-14 01:38:31] total 413760
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc    585013 Mar 13 05:05 pilot3.tar.gz
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc      5111 Mar 13 05:09 queuedata.json
[2026-03-14 01:38:31] -rwx------ 1 boinc boinc     36322 Mar 13 05:09 runpilot2-wrapper.sh
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc       100 Mar 13 23:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-03-14 01:38:31] -rwxr-xr-x 1 boinc boinc      7986 Mar 13 23:43 run_atlas
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc       105 Mar 13 23:43 job.xml
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc 214755035 Mar 13 23:43 EVNT.48967083._000726.pool.root.1
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc    597531 Mar 13 23:43 input.tar.gz
[2026-03-14 01:38:31] drwxrwx--x 2 boinc boinc      4096 Mar 13 23:43 shared
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc     15845 Mar 13 23:43 start_atlas.sh
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc         0 Mar 13 23:43 boinc_setup_complete
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc      6199 Mar 13 23:43 init_data.xml
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc         0 Mar 13 23:43 boinc_lockfile
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc      2563 Mar 13 23:43 pandaJob.out
[2026-03-14 01:38:31] -rw------- 1 boinc boinc   1006717 Mar 13 23:44 agis_schedconf.cvmfs.json
[2026-03-14 01:38:31] -rw------- 1 boinc boinc   1511579 Mar 13 23:44 agis_ddmendpoints.agis.ALL.json
[2026-03-14 01:38:31] -rw------- 1 boinc boinc       431 Mar 13 23:44 workernode_map.json
[2026-03-14 01:38:31] drwx------ 5 boinc boinc      4096 Mar 13 23:44 pilot3
[2026-03-14 01:38:31] -rw------- 1 boinc boinc 202461585 Mar 14 01:37 HITS.48967085._017917.pool.root.1
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc       529 Mar 14 01:37 boinc_task_state.xml
[2026-03-14 01:38:31] -rw------- 1 boinc boinc        95 Mar 14 01:37 pilot_heartbeat.json
[2026-03-14 01:38:31] -rw------- 1 boinc boinc      1028 Mar 14 01:37 memory_monitor_summary.json
[2026-03-14 01:38:31] -rw------- 1 boinc boinc    292934 Mar 14 01:37 log.48967085._017917.job.log.tgz.1
[2026-03-14 01:38:31] -rw------- 1 boinc boinc      6334 Mar 14 01:37 heartbeat.json
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc        27 Mar 14 01:38 wrapper_checkpoint.txt
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc      8192 Mar 14 01:38 boinc_mmap_file
[2026-03-14 01:38:31] -rw------- 1 boinc boinc       747 Mar 14 01:38 pilotlog.txt
[2026-03-14 01:38:31] -rw------- 1 boinc boinc    981744 Mar 14 01:38 log.48967085._017917.job.log.1
[2026-03-14 01:38:31] -rw------- 1 boinc boinc       357 Mar 14 01:38 output.list
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc       620 Mar 14 01:38 runtime_log
[2026-03-14 01:38:31] -rw------- 1 boinc boinc   1290240 Mar 14 01:38 result.tar.gz
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc      8916 Mar 14 01:38 runtime_log.err
[2026-03-14 01:38:31] -rw------- 1 boinc boinc       661 Mar 14 01:38 TxbKDmA18K9nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmaYoLDmMFRDnn.diag
[2026-03-14 01:38:31] -rw-r--r-- 1 boinc boinc     12338 Mar 14 01:38 stderr.txt
[2026-03-14 01:38:31] HITS file was successfully produced:
[2026-03-14 01:38:31] -rw------- 1 boinc boinc 202461585 Mar 14 01:37 shared/HITS.pool.root.1
[2026-03-14 01:38:31]  *** Contents of shared directory: ***
[2026-03-14 01:38:31] total 409312
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc 214755035 Mar 13 23:43 ATLAS.root_0
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc    597531 Mar 13 23:43 input.tar.gz
[2026-03-14 01:38:31] -rw-r--r-- 2 boinc boinc     15845 Mar 13 23:43 start_atlas.sh
[2026-03-14 01:38:31] -rw------- 1 boinc boinc 202461585 Mar 14 01:37 HITS.pool.root.1
[2026-03-14 01:38:31] -rw------- 1 boinc boinc   1290240 Mar 14 01:38 result.tar.gz
01:38:32 (3777062): run_atlas exited; CPU time 19752.218041
01:38:32 (3777062): called boinc_finish(0)

</stderr_txt>
]]>

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